Wall clock time and date at job start Tue Mar 31 2020 00:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.34514 * 125.78941 * 89.99871 * 7 6 4 9 9 C 1.41383 * 106.83636 * 180.02562 * 8 7 6 10 10 C 1.34509 * 106.84398 * 359.97438 * 9 8 7 11 11 O 1.34305 * 108.42234 * 359.74212 * 10 9 8 12 12 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 13 13 C 1.54914 * 101.58023 * 153.86287 * 12 2 1 14 14 N 1.47420 * 104.83159 * 322.99181 * 13 12 2 15 15 C 1.36945 * 125.64792 * 204.08975 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47020 * 108.70626 * 24.35323 * 14 13 12 24 24 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 25 25 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 26 26 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 27 27 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 28 28 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 29 29 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 30 30 H 1.07991 * 126.57892 * 359.96542 * 8 7 6 31 31 H 1.08006 * 126.57648 * 179.97438 * 9 8 7 32 32 H 1.08001 * 125.78933 * 179.97438 * 10 9 8 33 33 H 1.09002 * 111.00697 * 35.79181 * 12 2 1 34 34 H 1.08994 * 111.00548 * 271.93648 * 12 2 1 35 35 H 1.08999 * 110.37083 * 204.15142 * 13 12 2 36 36 H 1.08998 * 110.45606 * 81.87777 * 13 12 2 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.88406 * 118.12749 * 23 14 13 39 39 H 1.09001 * 109.88743 * 239.29401 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 0.5353 5.0952 -2.1860 9 6 0.4054 5.6205 -3.4922 10 6 1.4741 5.1970 -4.1906 11 8 2.2430 4.4520 -3.3797 12 6 2.0789 -0.7954 1.2138 13 6 3.4633 -1.2498 0.6875 14 7 3.2445 -1.5508 -0.7390 15 6 4.0043 -2.3970 -1.5018 16 1 3.7611 -2.5508 -2.5427 17 6 5.0869 -3.0571 -0.9371 18 7 5.3829 -2.8701 0.3317 19 14 6.1229 -4.2120 -1.9774 20 1 7.2104 -4.7866 -1.1454 21 1 5.2682 -5.3076 -2.5012 22 1 6.7141 -3.4595 -3.1129 23 6 2.0793 -0.7870 -1.2087 24 1 -0.3633 0.4628 0.9175 25 1 -0.3633 0.5633 -0.8595 26 1 -0.3633 -1.0259 -0.0580 27 1 2.6524 1.6598 0.7026 28 1 1.9226 4.1396 -0.0589 29 1 3.3140 3.6108 -1.0350 30 1 -0.1498 5.2385 -1.3636 31 1 -0.3979 6.2424 -3.8589 32 1 1.6809 5.4214 -5.2266 33 1 1.4451 -1.6535 1.4375 34 1 2.1850 -0.1518 2.0870 35 1 3.7960 -2.1427 1.2169 36 1 4.1946 -0.4492 0.7985 37 1 6.1393 -3.3317 0.7264 38 1 2.3814 -0.0970 -1.9965 39 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671677592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:57 Heat of formation + Delta-G solvation = 10.458912 kcal Electronic energy + Delta-G solvation = -21940.068638 eV Core-core repulsion = 18657.477918 eV Total energy + Delta-G solvation = -3282.590720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.52764 -39.85409 -37.33726 -33.98720 -33.16457 -32.41324 -31.50038 -29.90532 -28.66736 -27.00313 -25.65723 -23.65290 -21.74034 -21.50437 -20.39054 -20.05244 -19.01453 -17.50724 -17.10507 -16.71551 -15.63833 -15.55363 -15.17233 -14.71157 -14.42967 -13.75725 -13.62144 -13.17188 -12.95457 -12.80740 -12.68740 -12.67322 -12.24889 -12.05750 -11.73361 -11.61118 -11.54726 -10.93135 -10.83060 -10.40794 -10.32429 -10.10625 -9.95077 -9.88268 -9.64905 -9.30104 -8.65999 -8.60631 -8.43012 -6.80148 -5.63990 -3.04346 1.73242 2.61445 2.86012 2.97857 3.42634 3.46386 3.48017 3.56849 4.51229 4.55098 4.93551 4.97052 5.02879 5.23032 5.23541 5.27566 5.41052 5.51345 5.58555 5.75009 5.79478 5.90448 6.04738 6.10936 6.18220 6.23662 6.37648 6.46831 6.50993 6.53312 6.72154 6.83855 7.14740 7.16157 7.45415 7.64439 7.79780 7.86810 8.36547 8.51443 9.24613 9.85249 10.50029 11.40309 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.004424 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.671738 B = 6328.029970 C = 7051.965768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 N -0.707 5.707 4 C 0.515 3.485 5 O -0.527 6.527 6 C -0.065 4.065 7 C 0.015 3.985 8 C -0.201 4.201 9 C -0.215 4.215 10 C -0.040 4.040 11 O -0.171 6.171 12 C -0.146 4.146 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.218 4.218 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.137 3.863 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.398 0.602 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.200 0.800 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.010 0.990 37 H 0.252 0.748 38 H 0.030 0.970 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 15.634 0.670 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.358 5.358 4 C 0.300 3.700 5 O -0.403 6.403 6 C -0.105 4.105 7 C -0.036 4.036 8 C -0.221 4.221 9 C -0.234 4.234 10 C -0.108 4.108 11 O -0.066 6.066 12 C -0.185 4.185 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.347 4.347 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.212 1.212 22 H -0.213 1.213 23 C 0.010 3.990 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.233 0.767 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.217 0.783 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.355 15.064 -0.026 17.226 hybrid contribution 0.703 -0.239 -0.281 0.794 sum -7.652 14.824 -0.307 16.686 Atomic orbital electron populations 1.22064 0.94169 1.02451 1.02341 1.21354 0.93054 0.80285 0.97884 1.45945 1.49519 1.12158 1.28210 1.20196 0.81441 0.86468 0.81919 1.90692 1.35619 1.77981 1.36045 1.20144 1.03237 0.92908 0.94213 1.21519 0.95186 1.01507 0.85388 1.21466 0.98416 1.03371 0.98807 1.21761 1.00934 1.06220 0.94534 1.23969 0.92628 0.97631 0.96587 1.84019 1.45797 1.56860 1.19938 1.23352 1.01235 0.98843 0.95072 1.21939 0.89367 1.00661 0.85298 1.44502 1.30991 1.50126 1.07389 1.19057 1.06126 1.16547 0.92961 0.90628 1.24748 0.98744 1.00739 0.96462 1.69765 1.30217 1.46555 1.10911 0.86148 0.79741 0.80635 0.78983 1.21575 1.21158 1.21282 1.21607 0.90329 0.93115 0.93903 0.93219 0.90530 0.91834 0.76742 0.86151 0.87054 0.83739 0.83654 0.78293 0.90544 0.91855 0.87443 0.97171 0.93769 0.95204 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.44 37.16 0.31 -2.11 16 2 C 0.16 2.85 0.81 -129.98 -0.11 2.75 16 3 N -0.71 -10.79 5.14 -45.91 -0.24 -11.02 16 4 C 0.51 8.06 7.03 -10.98 -0.08 7.98 16 5 O -0.53 -10.29 13.01 5.56 0.07 -10.22 16 6 C -0.07 -0.76 6.23 -29.03 -0.18 -0.94 16 7 C 0.01 0.20 5.81 -35.62 -0.21 0.00 16 8 C -0.20 -2.52 10.81 -39.70 -0.43 -2.95 16 9 C -0.22 -2.48 10.91 -39.70 -0.43 -2.91 16 10 C -0.04 -0.47 12.09 29.41 0.36 -0.12 16 11 O -0.17 -2.51 10.65 5.70 0.06 -2.45 16 12 C -0.15 -2.62 6.07 -24.58 -0.15 -2.77 16 13 C 0.15 3.58 5.87 -2.53 -0.01 3.57 16 14 N -0.60 -15.76 3.39 -170.07 -0.58 -16.34 16 15 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 18 N -0.93 -26.81 10.09 55.49 0.56 -26.25 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.14 3.11 6.19 -3.06 -0.02 3.09 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 26 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.40 5.02 8.49 -40.82 -0.35 4.68 16 28 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 39 H 0.03 0.68 7.77 -51.93 -0.40 0.28 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -34.23 321.25 -6.98 -41.21 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.48 Total: 4.11 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.20 Total: -1.25 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.25 Total: -53.61 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.13 Total: -12.67 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.23 -6.98 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671677592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.669 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds