Wall clock time and date at job start Tue Mar 31 2020 00:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.34514 * 125.78941 * 89.99871 * 7 6 4 9 9 C 1.41383 * 106.83636 * 180.02562 * 8 7 6 10 10 C 1.34509 * 106.84398 * 359.97438 * 9 8 7 11 11 O 1.34305 * 108.42234 * 359.74212 * 10 9 8 12 12 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 13 13 C 1.54914 * 101.58023 * 153.86287 * 12 2 1 14 14 N 1.47420 * 104.83159 * 322.99181 * 13 12 2 15 15 C 1.36945 * 125.64792 * 204.08975 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47020 * 108.70626 * 24.35323 * 14 13 12 24 24 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 25 25 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 26 26 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 27 27 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 28 28 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 29 29 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 30 30 H 1.07991 * 126.57892 * 359.96542 * 8 7 6 31 31 H 1.08006 * 126.57648 * 179.97438 * 9 8 7 32 32 H 1.08001 * 125.78933 * 179.97438 * 10 9 8 33 33 H 1.09002 * 111.00697 * 35.79181 * 12 2 1 34 34 H 1.08994 * 111.00548 * 271.93648 * 12 2 1 35 35 H 1.08999 * 110.37083 * 204.15142 * 13 12 2 36 36 H 1.08998 * 110.45606 * 81.87777 * 13 12 2 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.88406 * 118.12749 * 23 14 13 39 39 H 1.09001 * 109.88743 * 239.29401 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 0.5353 5.0952 -2.1860 9 6 0.4054 5.6205 -3.4922 10 6 1.4741 5.1970 -4.1906 11 8 2.2430 4.4520 -3.3797 12 6 2.0789 -0.7954 1.2138 13 6 3.4633 -1.2498 0.6875 14 7 3.2445 -1.5508 -0.7390 15 6 4.0043 -2.3970 -1.5018 16 1 3.7611 -2.5508 -2.5427 17 6 5.0869 -3.0571 -0.9371 18 7 5.3829 -2.8701 0.3317 19 14 6.1229 -4.2120 -1.9774 20 1 7.2104 -4.7866 -1.1454 21 1 5.2682 -5.3076 -2.5012 22 1 6.7141 -3.4595 -3.1129 23 6 2.0793 -0.7870 -1.2087 24 1 -0.3633 0.4628 0.9175 25 1 -0.3633 0.5633 -0.8595 26 1 -0.3633 -1.0259 -0.0580 27 1 2.6524 1.6598 0.7026 28 1 1.9226 4.1396 -0.0589 29 1 3.3140 3.6108 -1.0350 30 1 -0.1498 5.2385 -1.3636 31 1 -0.3979 6.2424 -3.8589 32 1 1.6809 5.4214 -5.2266 33 1 1.4451 -1.6535 1.4375 34 1 2.1850 -0.1518 2.0870 35 1 3.7960 -2.1427 1.2169 36 1 4.1946 -0.4492 0.7985 37 1 6.1393 -3.3317 0.7264 38 1 2.3814 -0.0970 -1.9965 39 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671677592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:55 Heat of formation + Delta-G solvation = -13.062689 kcal Electronic energy + Delta-G solvation = -21941.088612 eV Core-core repulsion = 18657.477918 eV Total energy + Delta-G solvation = -3283.610693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.45991 -41.21536 -38.90992 -35.72041 -34.17959 -33.73935 -32.91385 -31.48848 -30.34549 -27.96207 -27.55146 -25.40515 -22.77874 -22.63647 -22.15942 -21.13620 -20.45116 -19.04819 -18.32918 -18.06992 -17.11339 -16.71926 -16.64469 -16.32818 -15.61229 -15.58194 -14.97635 -14.57161 -14.38338 -14.04657 -13.85869 -13.69648 -13.52942 -13.48962 -13.29468 -13.15894 -12.82879 -12.76366 -12.60569 -12.09824 -12.03895 -11.97138 -11.68889 -11.54249 -10.81510 -10.75544 -10.65660 -10.00802 -9.35748 -8.89612 -7.79687 -5.23336 0.78794 1.44486 1.47211 1.53868 1.66601 1.72306 2.08151 2.42803 2.48222 3.29385 3.59135 3.67704 3.71330 4.00480 4.03381 4.16309 4.18042 4.20658 4.40095 4.48579 4.63681 4.68158 4.82202 4.87242 4.91162 4.95223 5.01717 5.04135 5.10907 5.24279 5.35529 5.41415 5.62103 5.66376 5.70553 5.80857 6.24600 6.30913 6.65269 7.10583 7.33131 7.76377 8.39652 9.21240 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.004424 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.671738 B = 6328.029970 C = 7051.965768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.171 3.829 3 N -0.701 5.701 4 C 0.511 3.489 5 O -0.570 6.570 6 C -0.056 4.056 7 C -0.016 4.016 8 C -0.206 4.206 9 C -0.225 4.225 10 C -0.050 4.050 11 O -0.201 6.201 12 C -0.126 4.126 13 C 0.154 3.846 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.067 0.933 17 C -0.057 4.057 18 N -0.942 5.942 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.278 1.278 22 H -0.283 1.283 23 C 0.137 3.863 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.414 0.586 28 H 0.164 0.836 29 H 0.122 0.878 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.076 0.924 36 H -0.004 1.004 37 H 0.249 0.751 38 H 0.002 0.998 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 16.930 1.611 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.084 3.916 3 N -0.353 5.353 4 C 0.298 3.702 5 O -0.449 6.449 6 C -0.095 4.095 7 C -0.066 4.066 8 C -0.225 4.225 9 C -0.244 4.244 10 C -0.117 4.117 11 O -0.098 6.098 12 C -0.165 4.165 13 C 0.029 3.971 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.085 0.915 17 C -0.250 4.250 18 N -0.591 5.591 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.204 1.204 22 H -0.210 1.210 23 C 0.010 3.990 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.251 0.749 28 H 0.182 0.818 29 H 0.140 0.860 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.247 0.753 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.014 0.986 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.034 16.388 0.943 18.737 hybrid contribution 0.907 -0.623 -0.648 1.277 sum -8.127 15.765 0.295 17.739 Atomic orbital electron populations 1.21973 0.92239 1.02622 1.03206 1.21129 0.94259 0.81061 0.95103 1.45847 1.49676 1.10983 1.28826 1.20918 0.80537 0.87856 0.80873 1.90675 1.37651 1.79059 1.37561 1.20227 1.03569 0.90190 0.95493 1.21967 0.96185 1.02768 0.85705 1.21852 0.98135 1.02692 0.99804 1.22171 1.01557 1.06402 0.94293 1.24735 0.92434 0.96819 0.97732 1.83999 1.47074 1.57846 1.20848 1.23199 0.97352 0.99698 0.96213 1.21782 0.92440 0.98851 0.84003 1.44785 1.31520 1.50134 1.08513 1.19326 1.07266 1.17777 0.93238 0.91512 1.25521 0.99694 1.02100 0.97725 1.69999 1.30242 1.46951 1.11944 0.85178 0.78093 0.78694 0.77500 1.21162 1.20449 1.20960 1.21685 0.89087 0.92611 0.95609 0.90071 0.92137 0.91775 0.74942 0.81850 0.86008 0.81936 0.81198 0.75259 0.90057 0.87648 0.90643 0.98570 0.94087 0.97971 0.96487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.44 71.98 0.61 -3.66 16 2 C 0.17 5.89 0.81 4.80 0.00 5.90 16 3 N -0.70 -20.16 5.14 -417.55 -2.15 -22.30 16 4 C 0.51 15.44 7.03 87.66 0.62 16.05 16 5 O -0.57 -22.34 13.01 -3.03 -0.04 -22.38 16 6 C -0.06 -1.19 6.23 29.10 0.18 -1.01 16 7 C -0.02 -0.43 5.81 24.83 0.14 -0.28 16 8 C -0.21 -4.81 10.81 22.19 0.24 -4.57 16 9 C -0.23 -4.83 10.91 22.19 0.24 -4.58 16 10 C -0.05 -1.13 12.09 66.97 0.81 -0.32 16 11 O -0.20 -5.87 10.65 -2.53 -0.03 -5.90 16 12 C -0.13 -4.26 6.07 31.99 0.19 -4.07 16 13 C 0.15 7.27 5.87 86.86 0.51 7.78 16 14 N -0.62 -33.31 3.39 -691.97 -2.35 -35.66 16 15 C -0.25 -14.54 10.27 84.03 0.86 -13.67 16 16 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 17 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 18 N -0.94 -55.37 10.09 21.65 0.22 -55.15 16 19 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 C 0.14 6.33 6.19 86.73 0.54 6.87 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 2.05 5.97 -2.39 -0.01 2.04 16 26 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 27 H 0.41 9.31 8.49 -92.71 -0.79 8.53 16 28 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.16 3.02 8.06 -2.92 -0.02 3.00 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.23 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.08 2.71 8.05 -2.39 -0.02 2.69 16 34 H 0.11 2.71 8.07 -2.39 -0.02 2.69 16 35 H 0.08 4.08 5.87 -2.39 -0.01 4.07 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.00 0.12 6.90 -2.39 -0.02 0.10 16 39 H 0.02 0.82 7.77 -2.39 -0.02 0.80 16 Total: -1.00 -77.13 321.25 3.37 -73.76 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.27 Total: 17.50 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.41 Total: 1.61 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.28 Total: -113.12 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.07 Total: -28.28 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.13 3.37 -73.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671677592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.692 kcal (2) G-P(sol) polarization free energy of solvation -77.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds