Wall clock time and date at job start Tue Mar 31 2020 00:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 110.88629 * 2 1 4 4 C 1.34778 * 119.99786 * 59.30199 * 3 2 1 5 5 O 1.21283 * 120.00322 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99907 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47145 * 179.97438 * 6 4 3 8 8 C 1.34517 * 125.79044 * 90.00103 * 7 6 4 9 9 C 1.41388 * 106.83576 * 180.02562 * 8 7 6 10 10 C 1.34511 * 106.84442 * 359.97438 * 9 8 7 11 11 O 1.34295 * 108.42007 * 0.27361 * 10 9 8 12 12 C 1.55154 * 111.00593 * 236.11964 * 2 1 3 13 13 C 1.54428 * 102.89836 * 206.40769 * 12 2 1 14 14 N 1.47029 * 107.27630 * 22.18500 * 13 12 2 15 15 C 1.36945 * 125.64355 * 181.02834 * 14 13 12 16 16 H 1.07994 * 119.99394 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99888 * 0.03886 * 15 14 13 18 18 N 1.31620 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46884 * 90.00273 * 19 17 15 21 21 H 1.48505 * 109.47252 * 209.99880 * 19 17 15 22 22 H 1.48501 * 109.47276 * 330.00531 * 19 17 15 23 23 C 1.47418 * 108.70573 * 1.06320 * 14 13 12 24 24 H 1.08997 * 109.47560 * 60.70010 * 1 2 3 25 25 H 1.09003 * 109.47166 * 180.70690 * 1 2 3 26 26 H 1.09004 * 109.47031 * 300.69763 * 1 2 3 27 27 H 0.96997 * 119.99934 * 239.29531 * 3 2 1 28 28 H 1.08997 * 109.47343 * 59.99082 * 6 4 3 29 29 H 1.09007 * 109.47002 * 299.99423 * 6 4 3 30 30 H 1.07992 * 126.58259 * 0.02562 * 8 7 6 31 31 H 1.08002 * 126.57184 * 179.97438 * 9 8 7 32 32 H 1.08002 * 125.78644 * 179.97438 * 10 9 8 33 33 H 1.08999 * 110.71794 * 324.74957 * 12 2 1 34 34 H 1.09001 * 110.72116 * 88.01824 * 12 2 1 35 35 H 1.08993 * 109.87560 * 262.77122 * 13 12 2 36 36 H 1.08994 * 109.88163 * 141.60636 * 13 12 2 37 37 H 0.97000 * 120.00057 * 180.02562 * 18 17 15 38 38 H 1.09003 * 110.36417 * 217.03156 * 23 14 13 39 39 H 1.09000 * 110.36747 * 94.71364 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2107 1.0037 5 8 1.0182 1.8355 1.9066 6 6 2.2726 3.6189 1.0034 7 6 1.7736 4.3470 2.2248 8 6 2.3897 4.3930 3.4197 9 6 1.5776 5.1791 4.2692 10 6 0.5142 5.5669 3.5425 11 8 0.6354 5.0553 2.3067 12 6 2.0861 -0.8074 -1.2025 13 6 3.4684 -1.2732 -0.6952 14 7 3.4275 -1.2420 0.7742 15 6 4.4643 -1.5650 1.6084 16 1 4.3331 -1.5100 2.6790 17 6 5.6839 -1.9626 1.0780 18 7 5.8439 -2.0288 -0.2267 19 14 7.0984 -2.4025 2.2160 20 1 7.0456 -3.8521 2.5337 21 1 8.3871 -2.0888 1.5480 22 1 6.9870 -1.6163 3.4709 23 6 2.0853 -0.8062 1.2006 24 1 -0.3634 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0127 26 1 -0.3633 0.5246 0.8837 27 1 2.6259 1.6689 -0.7223 28 1 1.9319 4.1375 0.1072 29 1 3.3622 3.5924 1.0157 30 1 3.3251 3.9202 3.6802 31 1 1.7737 5.4217 5.3032 32 1 -0.3013 6.1811 3.8947 33 1 1.4471 -1.6630 -1.4211 34 1 2.1915 -0.1693 -2.0799 35 1 4.2432 -0.5985 -1.0589 36 1 3.6666 -2.2884 -1.0390 37 1 6.6961 -2.3070 -0.5974 38 1 2.1554 -0.1715 2.0840 39 1 1.4523 -1.6703 1.4027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671677593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:00 Heat of formation + Delta-G solvation = 8.070028 kcal Electronic energy + Delta-G solvation = -22105.185783 eV Core-core repulsion = 18822.491473 eV Total energy + Delta-G solvation = -3282.694310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.47074 -39.76799 -37.29703 -33.91424 -33.08923 -32.36296 -31.47985 -29.91926 -28.66322 -26.94641 -25.64292 -23.66316 -21.68277 -21.49955 -20.33312 -19.93434 -19.01411 -17.47486 -17.06246 -16.61919 -15.56068 -15.52781 -15.10714 -14.66884 -14.41006 -13.75076 -13.58795 -13.24427 -12.99271 -12.74394 -12.65640 -12.58575 -12.05871 -11.90449 -11.83932 -11.63841 -11.56868 -10.88242 -10.87327 -10.37597 -10.34912 -10.07378 -9.98499 -9.81182 -9.64913 -9.30671 -8.64288 -8.51462 -8.36719 -6.78904 -5.70009 -3.01785 1.78273 2.69286 2.92504 3.04616 3.40935 3.46507 3.48066 3.63094 4.51836 4.62777 4.97434 5.03340 5.10914 5.20829 5.28331 5.40339 5.43781 5.49332 5.63425 5.74304 5.87731 6.02424 6.02887 6.13636 6.17076 6.18570 6.37653 6.41408 6.55685 6.58344 6.70343 6.83664 7.15199 7.20719 7.55686 7.57440 7.80972 7.91146 8.27219 8.59280 9.24787 9.84791 10.50983 11.42034 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.005222 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.988673 B = 5360.579655 C = 6434.379906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 N -0.701 5.701 4 C 0.517 3.483 5 O -0.530 6.530 6 C -0.064 4.064 7 C 0.012 3.988 8 C -0.197 4.197 9 C -0.211 4.211 10 C -0.046 4.046 11 O -0.174 6.174 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.925 5.925 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.132 3.868 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.399 0.601 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.200 0.800 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.251 0.749 38 H 0.052 0.948 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 13.259 -0.354 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 N -0.351 5.351 4 C 0.302 3.698 5 O -0.407 6.407 6 C -0.103 4.103 7 C -0.038 4.038 8 C -0.216 4.216 9 C -0.231 4.231 10 C -0.114 4.114 11 O -0.070 6.070 12 C -0.185 4.185 13 C 0.053 3.947 14 N -0.330 5.330 15 C -0.350 4.350 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.005 3.995 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.233 0.767 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.216 0.784 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.613 12.932 0.040 16.114 hybrid contribution 1.274 -0.181 0.457 1.365 sum -8.340 12.751 0.497 15.245 Atomic orbital electron populations 1.22006 0.94385 1.02130 1.02394 1.21475 0.92552 0.80750 0.98143 1.45754 1.51618 1.12292 1.25463 1.20154 0.81026 0.86464 0.82137 1.90683 1.37155 1.77377 1.35483 1.20137 1.02743 0.92518 0.94942 1.21518 0.86449 0.98511 0.97323 1.21572 1.03093 1.04171 0.92760 1.21788 0.96587 1.03492 1.01186 1.23911 1.01628 1.03217 0.82595 1.83963 1.37533 1.53090 1.32456 1.23247 1.00493 0.98902 0.95890 1.21170 0.89957 0.99897 0.83695 1.44448 1.07780 1.78920 1.01802 1.19064 0.89334 1.37562 0.88993 0.90632 1.24750 0.97716 1.02047 0.95994 1.69947 1.24118 1.54076 1.09169 0.86143 0.81960 0.78258 0.79582 1.21651 1.21729 1.20776 1.21875 0.87542 0.94873 0.95178 0.93199 0.91932 0.90782 0.76720 0.87458 0.85841 0.83499 0.83654 0.78358 0.90919 0.91730 0.93622 0.93883 0.93887 0.92928 0.95793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.57 37.16 0.32 -2.03 16 2 C 0.16 2.78 0.82 -129.67 -0.11 2.67 16 3 N -0.70 -11.08 5.18 -45.62 -0.24 -11.32 16 4 C 0.52 8.43 7.20 -10.98 -0.08 8.36 16 5 O -0.53 -10.59 12.84 5.56 0.07 -10.52 16 6 C -0.06 -0.79 6.23 -29.03 -0.18 -0.97 16 7 C 0.01 0.18 5.81 -35.63 -0.21 -0.03 16 8 C -0.20 -2.81 10.81 -39.70 -0.43 -3.24 16 9 C -0.21 -2.63 10.91 -39.70 -0.43 -3.07 16 10 C -0.05 -0.54 12.09 29.41 0.36 -0.18 16 11 O -0.17 -2.48 10.65 5.71 0.06 -2.42 16 12 C -0.15 -2.57 5.99 -24.84 -0.15 -2.72 16 13 C 0.18 4.15 5.37 -3.00 -0.02 4.13 16 14 N -0.60 -15.41 3.39 -170.01 -0.58 -15.98 16 15 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.78 10.31 55.49 0.57 -26.21 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.13 2.92 6.13 -2.53 -0.02 2.91 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 26 H 0.07 1.28 6.23 -51.93 -0.32 0.96 16 27 H 0.40 5.38 8.50 -40.82 -0.35 5.04 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.12 1.33 8.14 -51.92 -0.42 0.91 16 30 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 36 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.05 1.26 6.59 -51.93 -0.34 0.92 16 39 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -33.83 322.15 -7.01 -40.84 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.54 Total: 4.42 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.19 Total: -0.93 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.24 Total: -53.51 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.13 Total: -12.93 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.83 -7.01 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671677593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.909 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds