Wall clock time and date at job start Tue Mar 31 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 110.88629 * 2 1 4 4 C 1.34778 * 119.99786 * 59.30199 * 3 2 1 5 5 O 1.21283 * 120.00322 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99907 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47145 * 179.97438 * 6 4 3 8 8 C 1.34517 * 125.79044 * 90.00103 * 7 6 4 9 9 C 1.41388 * 106.83576 * 180.02562 * 8 7 6 10 10 C 1.34511 * 106.84442 * 359.97438 * 9 8 7 11 11 O 1.34295 * 108.42007 * 0.27361 * 10 9 8 12 12 C 1.55154 * 111.00593 * 236.11964 * 2 1 3 13 13 C 1.54428 * 102.89836 * 206.40769 * 12 2 1 14 14 N 1.47029 * 107.27630 * 22.18500 * 13 12 2 15 15 C 1.36945 * 125.64355 * 181.02834 * 14 13 12 16 16 H 1.07994 * 119.99394 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99888 * 0.03886 * 15 14 13 18 18 N 1.31620 * 120.00385 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46884 * 90.00273 * 19 17 15 21 21 H 1.48505 * 109.47252 * 209.99880 * 19 17 15 22 22 H 1.48501 * 109.47276 * 330.00531 * 19 17 15 23 23 C 1.47418 * 108.70573 * 1.06320 * 14 13 12 24 24 H 1.08997 * 109.47560 * 60.70010 * 1 2 3 25 25 H 1.09003 * 109.47166 * 180.70690 * 1 2 3 26 26 H 1.09004 * 109.47031 * 300.69763 * 1 2 3 27 27 H 0.96997 * 119.99934 * 239.29531 * 3 2 1 28 28 H 1.08997 * 109.47343 * 59.99082 * 6 4 3 29 29 H 1.09007 * 109.47002 * 299.99423 * 6 4 3 30 30 H 1.07992 * 126.58259 * 0.02562 * 8 7 6 31 31 H 1.08002 * 126.57184 * 179.97438 * 9 8 7 32 32 H 1.08002 * 125.78644 * 179.97438 * 10 9 8 33 33 H 1.08999 * 110.71794 * 324.74957 * 12 2 1 34 34 H 1.09001 * 110.72116 * 88.01824 * 12 2 1 35 35 H 1.08993 * 109.87560 * 262.77122 * 13 12 2 36 36 H 1.08994 * 109.88163 * 141.60636 * 13 12 2 37 37 H 0.97000 * 120.00057 * 180.02562 * 18 17 15 38 38 H 1.09003 * 110.36417 * 217.03156 * 23 14 13 39 39 H 1.09000 * 110.36747 * 94.71364 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2107 1.0037 5 8 1.0182 1.8355 1.9066 6 6 2.2726 3.6189 1.0034 7 6 1.7736 4.3470 2.2248 8 6 2.3897 4.3930 3.4197 9 6 1.5776 5.1791 4.2692 10 6 0.5142 5.5669 3.5425 11 8 0.6354 5.0553 2.3067 12 6 2.0861 -0.8074 -1.2025 13 6 3.4684 -1.2732 -0.6952 14 7 3.4275 -1.2420 0.7742 15 6 4.4643 -1.5650 1.6084 16 1 4.3331 -1.5100 2.6790 17 6 5.6839 -1.9626 1.0780 18 7 5.8439 -2.0288 -0.2267 19 14 7.0984 -2.4025 2.2160 20 1 7.0456 -3.8521 2.5337 21 1 8.3871 -2.0888 1.5480 22 1 6.9870 -1.6163 3.4709 23 6 2.0853 -0.8062 1.2006 24 1 -0.3634 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0127 26 1 -0.3633 0.5246 0.8837 27 1 2.6259 1.6689 -0.7223 28 1 1.9319 4.1375 0.1072 29 1 3.3622 3.5924 1.0157 30 1 3.3251 3.9202 3.6802 31 1 1.7737 5.4217 5.3032 32 1 -0.3013 6.1811 3.8947 33 1 1.4471 -1.6630 -1.4211 34 1 2.1915 -0.1693 -2.0799 35 1 4.2432 -0.5985 -1.0589 36 1 3.6666 -2.2884 -1.0390 37 1 6.6961 -2.3070 -0.5974 38 1 2.1554 -0.1715 2.0840 39 1 1.4523 -1.6703 1.4027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671677593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:59 Heat of formation + Delta-G solvation = -14.961971 kcal Electronic energy + Delta-G solvation = -22106.184525 eV Core-core repulsion = 18822.491473 eV Total energy + Delta-G solvation = -3283.693052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.45847 -41.15822 -38.87447 -35.65609 -34.16624 -33.73904 -32.90820 -31.51429 -30.31837 -27.96945 -27.51066 -25.41235 -22.85597 -22.64057 -22.02287 -21.12162 -20.44508 -19.03629 -18.28654 -18.02725 -17.06532 -16.67500 -16.62148 -16.32307 -15.71382 -15.56384 -14.92961 -14.71172 -14.31514 -13.88627 -13.83283 -13.73586 -13.53203 -13.52447 -13.35912 -13.04541 -12.86402 -12.75978 -12.60423 -12.09518 -12.03768 -11.97184 -11.69179 -11.54521 -10.83325 -10.71429 -10.65801 -9.96481 -9.36196 -8.86217 -7.85832 -5.19473 0.78338 1.44044 1.45108 1.53911 1.67755 1.72082 2.06277 2.44282 2.48207 3.32416 3.57119 3.67781 3.71978 4.00742 4.06006 4.15062 4.18589 4.21058 4.39247 4.49573 4.65534 4.70216 4.83008 4.87111 4.93697 4.94964 5.03103 5.03283 5.09940 5.23355 5.36930 5.42814 5.62051 5.66184 5.71720 5.79612 6.20343 6.21922 6.67523 7.12149 7.35472 7.77588 8.41934 9.23844 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.005222 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.988673 B = 5360.579655 C = 6434.379906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.168 3.832 3 N -0.697 5.697 4 C 0.513 3.487 5 O -0.571 6.571 6 C -0.056 4.056 7 C -0.007 4.007 8 C -0.221 4.221 9 C -0.229 4.229 10 C -0.040 4.040 11 O -0.187 6.187 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.066 0.934 17 C -0.056 4.056 18 N -0.944 5.944 19 Si 0.972 3.028 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.129 3.871 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.412 0.588 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.241 0.759 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.022 0.978 36 H 0.007 0.993 37 H 0.248 0.752 38 H 0.027 0.973 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 14.615 -1.040 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.081 3.919 3 N -0.348 5.348 4 C 0.300 3.700 5 O -0.451 6.451 6 C -0.095 4.095 7 C -0.058 4.058 8 C -0.240 4.240 9 C -0.248 4.248 10 C -0.106 4.106 11 O -0.084 6.084 12 C -0.166 4.166 13 C 0.060 3.940 14 N -0.346 5.346 15 C -0.372 4.372 16 H 0.084 0.916 17 C -0.249 4.249 18 N -0.593 5.593 19 Si 0.801 3.199 20 H -0.214 1.214 21 H -0.214 1.214 22 H -0.202 1.202 23 C 0.003 3.997 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.248 0.752 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.183 0.817 32 H 0.257 0.743 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.494 14.306 -0.664 17.754 hybrid contribution 1.531 -0.610 0.755 1.812 sum -8.963 13.696 0.091 16.369 Atomic orbital electron populations 1.21919 0.92217 1.02908 1.02866 1.21309 0.93930 0.81169 0.95533 1.45725 1.51685 1.11460 1.25960 1.20812 0.80192 0.87764 0.81255 1.90666 1.39051 1.78424 1.36918 1.20178 1.03399 0.89967 0.95948 1.21803 0.86786 0.99203 0.97979 1.21834 1.03553 1.04907 0.93689 1.22123 0.96776 1.03651 1.02253 1.24758 1.02139 1.02255 0.81493 1.83960 1.37470 1.53312 1.33660 1.23118 0.96756 0.99988 0.96731 1.20978 0.93003 0.97452 0.82571 1.44686 1.08401 1.78866 1.02693 1.19298 0.90682 1.37974 0.89231 0.91577 1.25480 0.99816 1.02181 0.97464 1.70137 1.24311 1.54450 1.10403 0.85178 0.78897 0.77840 0.77997 1.21405 1.21423 1.20162 1.21968 0.86334 0.94942 0.96462 0.90371 0.91003 0.92630 0.75183 0.83962 0.84339 0.83944 0.81669 0.74322 0.89302 0.88090 0.96015 0.97491 0.94269 0.95475 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.57 71.98 0.62 -3.45 16 2 C 0.17 5.68 0.82 5.00 0.00 5.68 16 3 N -0.70 -20.93 5.18 -416.64 -2.16 -23.08 16 4 C 0.51 16.25 7.20 87.66 0.63 16.89 16 5 O -0.57 -22.89 12.84 -3.04 -0.04 -22.92 16 6 C -0.06 -1.30 6.23 29.10 0.18 -1.12 16 7 C -0.01 -0.21 5.81 24.83 0.14 -0.06 16 8 C -0.22 -6.28 10.81 22.19 0.24 -6.04 16 9 C -0.23 -5.46 10.91 22.19 0.24 -5.22 16 10 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 11 O -0.19 -5.05 10.65 -2.47 -0.03 -5.08 16 12 C -0.13 -4.20 5.99 31.82 0.19 -4.01 16 13 C 0.18 8.68 5.37 86.76 0.47 9.15 16 14 N -0.62 -32.33 3.39 -691.78 -2.35 -34.68 16 15 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 17 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 18 N -0.94 -55.60 10.31 21.65 0.22 -55.38 16 19 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 C 0.13 5.79 6.13 86.86 0.53 6.32 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 26 H 0.05 1.85 6.23 -2.39 -0.01 1.84 16 27 H 0.41 10.16 8.50 -92.71 -0.79 9.37 16 28 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.14 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 34 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 35 H 0.02 1.11 7.38 -2.39 -0.02 1.09 16 36 H 0.01 0.37 7.51 -2.39 -0.02 0.35 16 37 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.03 1.34 6.59 -2.39 -0.02 1.32 16 39 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 Total: -1.00 -75.76 322.15 3.33 -72.43 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.27 Total: 18.15 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.39 Total: 2.19 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.28 Total: -113.14 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.07 Total: -28.00 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.76 3.33 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671677593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.468 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds