Wall clock time and date at job start Tue Mar 31 2020 00:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.45722 * 2 1 4 4 C 1.36932 * 120.00164 * 59.99535 * 3 2 1 5 5 H 1.08003 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.38811 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.31617 * 120.00342 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99701 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47412 * 270.00313 * 8 6 4 10 10 H 1.48501 * 109.47522 * 30.00596 * 8 6 4 11 11 H 1.48500 * 109.47182 * 150.00302 * 8 6 4 12 12 C 1.53039 * 109.45930 * 119.96799 * 2 1 3 13 13 C 1.53171 * 109.32854 * 181.39060 * 12 2 1 14 14 N 1.46926 * 108.76517 * 305.35667 * 13 12 2 15 15 C 1.34772 * 120.63086 * 233.58623 * 14 13 12 16 16 O 1.21613 * 120.00515 * 173.72221 * 15 14 13 17 17 C 1.47382 * 120.00115 * 353.72085 * 15 14 13 18 18 C 1.47019 * 127.19024 * 333.14518 * 17 15 14 19 19 C 1.34177 * 105.95628 * 179.97438 * 18 17 15 20 20 O 1.34217 * 109.12236 * 359.97438 * 19 18 17 21 21 C 1.33655 * 110.90720 * 359.76683 * 20 19 18 22 22 C 1.46924 * 118.73982 * 53.60862 * 14 13 12 23 23 C 1.53041 * 109.46499 * 240.02338 * 2 1 3 24 24 H 1.08997 * 109.47142 * 60.00428 * 1 2 3 25 25 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47560 * 300.00217 * 1 2 3 27 27 H 0.96997 * 119.99634 * 240.00087 * 3 2 1 28 28 H 0.97002 * 119.99520 * 0.02562 * 7 6 4 29 29 H 1.09005 * 109.49920 * 301.32187 * 12 2 1 30 30 H 1.08998 * 109.50027 * 61.42267 * 12 2 1 31 31 H 1.08997 * 109.59040 * 185.57001 * 13 12 2 32 32 H 1.09003 * 109.70730 * 65.20923 * 13 12 2 33 33 H 1.08005 * 127.02238 * 359.97438 * 18 17 15 34 34 H 1.08003 * 125.44183 * 180.02562 * 19 18 17 35 35 H 1.07999 * 125.79924 * 180.25832 * 21 20 19 36 36 H 1.09002 * 109.58827 * 186.60527 * 22 14 13 37 37 H 1.09001 * 109.70206 * 66.24760 * 22 14 13 38 38 H 1.08993 * 109.49671 * 298.58017 * 23 2 1 39 39 H 1.09000 * 109.49392 * 58.64375 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6870 2.2245 1.0269 5 1 1.0664 1.8711 1.8371 6 6 2.1498 3.5332 1.0271 7 7 2.9065 3.9639 0.0400 8 14 1.6976 4.6836 2.4277 9 1 0.4351 5.3926 2.0980 10 1 1.5128 3.8975 3.6740 11 1 2.7853 5.6752 2.6247 12 6 2.0398 -0.7208 1.2501 13 6 3.5711 -0.6887 1.2647 14 7 4.0677 -1.2491 0.0005 15 6 4.9618 -2.2576 0.0007 16 8 5.2790 -2.7893 -1.0460 17 6 5.5551 -2.7162 1.2695 18 6 5.7489 -1.9287 2.4958 19 6 6.3199 -2.7595 3.3813 20 8 6.4870 -3.9628 2.8107 21 6 6.0333 -3.9618 1.5536 22 6 3.5715 -0.6889 -1.2638 23 6 2.0400 -0.7210 -1.2499 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.5756 1.6988 -0.7275 28 1 3.1404 3.3668 -0.6878 29 1 1.6574 -0.2206 2.1399 30 1 1.6976 -1.7556 1.2384 31 1 3.9412 -1.2846 2.0989 32 1 3.9163 0.3400 1.3689 33 1 5.4854 -0.8930 2.6520 34 1 6.5997 -2.5014 4.3920 35 1 6.0455 -4.8034 0.8768 36 1 3.9418 -1.2850 -2.0979 37 1 3.9146 0.3403 -1.3695 38 1 1.6978 -1.7557 -1.2381 39 1 1.6571 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673938607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:08 Heat of formation + Delta-G solvation = 3.113728 kcal Electronic energy + Delta-G solvation = -22515.024576 eV Core-core repulsion = 19232.115345 eV Total energy + Delta-G solvation = -3282.909231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60947 -39.84097 -37.78035 -34.68419 -33.21776 -32.40859 -30.66139 -29.85410 -28.75517 -27.77128 -24.38574 -23.53520 -23.15383 -21.86486 -21.43122 -19.71612 -18.70092 -17.45941 -16.97184 -16.50213 -16.09922 -15.69821 -15.19523 -14.66167 -14.42601 -14.14760 -13.65061 -13.60068 -13.22072 -13.15550 -13.04731 -12.55335 -12.36012 -11.94214 -11.60968 -11.39031 -11.26517 -10.82835 -10.78095 -10.55756 -10.28999 -10.02461 -9.92261 -9.89019 -9.49029 -9.11005 -8.96608 -8.85903 -8.24382 -7.04677 -6.10640 -3.11114 1.41779 2.01277 2.85458 3.22956 3.42043 3.48541 3.52560 3.66423 4.51410 4.63718 4.72953 4.96442 5.19355 5.26593 5.31200 5.40820 5.50749 5.56694 5.61873 5.70390 5.75350 5.89622 5.98295 6.01125 6.11078 6.17596 6.20645 6.32996 6.38200 6.44699 6.51714 6.69027 6.77346 6.89899 6.96084 7.02021 7.71547 7.80297 8.37239 8.73831 9.20551 10.07276 10.23395 11.37180 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.005610 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.542172 B = 4989.673853 C = 5729.184549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 N -0.728 5.728 4 C -0.322 4.322 5 H 0.065 0.935 6 C -0.045 4.045 7 N -0.945 5.945 8 Si 1.078 2.922 9 H -0.297 1.297 10 H -0.296 1.296 11 H -0.289 1.289 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.590 5.590 15 C 0.585 3.415 16 O -0.558 6.558 17 C -0.231 4.231 18 C -0.189 4.189 19 C -0.041 4.041 20 O -0.179 6.179 21 C 0.036 3.964 22 C 0.117 3.883 23 C -0.130 4.130 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.366 0.634 28 H 0.255 0.745 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.208 0.792 35 H 0.214 0.786 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -13.961 5.034 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.371 5.371 4 C -0.453 4.453 5 H 0.083 0.917 6 C -0.243 4.243 7 N -0.591 5.591 8 Si 0.910 3.090 9 H -0.225 1.225 10 H -0.223 1.223 11 H -0.216 1.216 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.321 5.321 15 C 0.374 3.626 16 O -0.439 6.439 17 C -0.236 4.236 18 C -0.208 4.208 19 C -0.107 4.107 20 O -0.074 6.074 21 C -0.034 4.034 22 C -0.005 4.005 23 C -0.169 4.169 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.200 0.800 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.183 0.817 34 H 0.224 0.776 35 H 0.230 0.770 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.350 -12.948 5.419 14.430 hybrid contribution -0.331 -1.062 -0.763 1.349 sum 3.019 -14.010 4.656 15.069 Atomic orbital electron populations 1.22193 0.97501 0.98979 1.02104 1.19477 0.92154 0.85712 0.91586 1.42514 1.61189 1.06667 1.26771 1.19937 1.29468 0.94411 1.01454 0.91724 1.25644 0.99120 0.95955 1.03533 1.70854 1.38966 1.37998 1.11260 0.83251 0.75861 0.75696 0.74238 1.22487 1.22257 1.21559 1.22274 0.94763 0.99019 1.01224 1.22201 0.95159 1.00000 0.84573 1.47886 1.41707 1.34107 1.08390 1.17301 0.78794 0.79395 0.87125 1.90746 1.63101 1.57158 1.32880 1.21495 1.10204 0.95574 0.96281 1.23200 1.03929 1.01711 0.91989 1.23949 1.04446 0.82459 0.99856 1.83802 1.64591 1.34279 1.24751 1.24285 0.96495 0.98831 0.83761 1.21553 0.94192 0.99034 0.85719 1.22102 0.94889 1.00582 0.99312 0.93279 0.94560 0.92477 0.79962 0.93407 0.90634 0.93390 0.89579 0.89617 0.81692 0.77571 0.76957 0.89711 0.90936 0.91758 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.44 37.16 0.31 -2.34 16 2 C 0.20 3.74 0.74 -131.77 -0.10 3.64 16 3 N -0.73 -16.44 4.14 -47.19 -0.20 -16.64 16 4 C -0.32 -8.21 8.68 -15.06 -0.13 -8.34 16 5 H 0.06 1.64 6.70 -52.48 -0.35 1.29 16 6 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 7 N -0.95 -28.00 13.70 55.49 0.76 -27.24 16 8 Si 1.08 24.96 29.92 -169.99 -5.09 19.87 16 9 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.30 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C -0.13 -2.27 4.70 -26.62 -0.13 -2.40 16 13 C 0.10 1.70 5.03 -3.72 -0.02 1.69 16 14 N -0.59 -10.05 2.97 -174.07 -0.52 -10.57 16 15 C 0.58 10.08 7.65 -12.54 -0.10 9.99 16 16 O -0.56 -10.94 16.44 5.27 0.09 -10.85 16 17 C -0.23 -3.31 5.73 -103.28 -0.59 -3.90 16 18 C -0.19 -2.33 8.67 -37.46 -0.32 -2.66 16 19 C -0.04 -0.41 12.03 29.30 0.35 -0.06 16 20 O -0.18 -1.97 10.52 7.64 0.08 -1.89 16 21 C 0.04 0.43 12.00 30.07 0.36 0.79 16 22 C 0.12 2.02 6.17 -3.71 -0.02 1.99 16 23 C -0.13 -2.15 4.96 -26.61 -0.13 -2.28 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.09 7.27 -51.93 -0.38 0.71 16 27 H 0.37 8.78 5.30 -40.82 -0.22 8.56 16 28 H 0.25 7.45 6.77 -40.82 -0.28 7.17 16 29 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.25 4.01 -51.93 -0.21 1.04 16 32 H 0.09 1.67 7.74 -51.93 -0.40 1.27 16 33 H 0.17 2.00 6.51 -52.48 -0.34 1.66 16 34 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.21 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 37 H 0.07 1.34 6.94 -51.93 -0.36 0.98 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -31.52 311.68 -5.82 -37.33 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.03 Total: 10.48 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.61 Total: -5.20 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.05 Total: -54.44 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.17 Total: -12.74 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.09 Total: 19.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.52 -5.82 -37.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673938607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.445 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds