Wall clock time and date at job start Tue Mar 31 2020 00:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.45722 * 2 1 4 4 C 1.36932 * 120.00164 * 59.99535 * 3 2 1 5 5 H 1.08003 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.38811 * 119.99853 * 179.97438 * 4 3 2 7 7 N 1.31617 * 120.00342 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99701 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47412 * 270.00313 * 8 6 4 10 10 H 1.48501 * 109.47522 * 30.00596 * 8 6 4 11 11 H 1.48500 * 109.47182 * 150.00302 * 8 6 4 12 12 C 1.53039 * 109.45930 * 119.96799 * 2 1 3 13 13 C 1.53171 * 109.32854 * 181.39060 * 12 2 1 14 14 N 1.46926 * 108.76517 * 305.35667 * 13 12 2 15 15 C 1.34772 * 120.63086 * 233.58623 * 14 13 12 16 16 O 1.21613 * 120.00515 * 173.72221 * 15 14 13 17 17 C 1.47382 * 120.00115 * 353.72085 * 15 14 13 18 18 C 1.47019 * 127.19024 * 333.14518 * 17 15 14 19 19 C 1.34177 * 105.95628 * 179.97438 * 18 17 15 20 20 O 1.34217 * 109.12236 * 359.97438 * 19 18 17 21 21 C 1.33655 * 110.90720 * 359.76683 * 20 19 18 22 22 C 1.46924 * 118.73982 * 53.60862 * 14 13 12 23 23 C 1.53041 * 109.46499 * 240.02338 * 2 1 3 24 24 H 1.08997 * 109.47142 * 60.00428 * 1 2 3 25 25 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47560 * 300.00217 * 1 2 3 27 27 H 0.96997 * 119.99634 * 240.00087 * 3 2 1 28 28 H 0.97002 * 119.99520 * 0.02562 * 7 6 4 29 29 H 1.09005 * 109.49920 * 301.32187 * 12 2 1 30 30 H 1.08998 * 109.50027 * 61.42267 * 12 2 1 31 31 H 1.08997 * 109.59040 * 185.57001 * 13 12 2 32 32 H 1.09003 * 109.70730 * 65.20923 * 13 12 2 33 33 H 1.08005 * 127.02238 * 359.97438 * 18 17 15 34 34 H 1.08003 * 125.44183 * 180.02562 * 19 18 17 35 35 H 1.07999 * 125.79924 * 180.25832 * 21 20 19 36 36 H 1.09002 * 109.58827 * 186.60527 * 22 14 13 37 37 H 1.09001 * 109.70206 * 66.24760 * 22 14 13 38 38 H 1.08993 * 109.49671 * 298.58017 * 23 2 1 39 39 H 1.09000 * 109.49392 * 58.64375 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6870 2.2245 1.0269 5 1 1.0664 1.8711 1.8371 6 6 2.1498 3.5332 1.0271 7 7 2.9065 3.9639 0.0400 8 14 1.6976 4.6836 2.4277 9 1 0.4351 5.3926 2.0980 10 1 1.5128 3.8975 3.6740 11 1 2.7853 5.6752 2.6247 12 6 2.0398 -0.7208 1.2501 13 6 3.5711 -0.6887 1.2647 14 7 4.0677 -1.2491 0.0005 15 6 4.9618 -2.2576 0.0007 16 8 5.2790 -2.7893 -1.0460 17 6 5.5551 -2.7162 1.2695 18 6 5.7489 -1.9287 2.4958 19 6 6.3199 -2.7595 3.3813 20 8 6.4870 -3.9628 2.8107 21 6 6.0333 -3.9618 1.5536 22 6 3.5715 -0.6889 -1.2638 23 6 2.0400 -0.7210 -1.2499 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.5756 1.6988 -0.7275 28 1 3.1404 3.3668 -0.6878 29 1 1.6574 -0.2206 2.1399 30 1 1.6976 -1.7556 1.2384 31 1 3.9412 -1.2846 2.0989 32 1 3.9163 0.3400 1.3689 33 1 5.4854 -0.8930 2.6520 34 1 6.5997 -2.5014 4.3920 35 1 6.0455 -4.8034 0.8768 36 1 3.9418 -1.2850 -2.0979 37 1 3.9146 0.3403 -1.3695 38 1 1.6978 -1.7557 -1.2381 39 1 1.6571 -0.2213 -2.1397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673938607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:08 Heat of formation + Delta-G solvation = -17.059341 kcal Electronic energy + Delta-G solvation = -22515.899346 eV Core-core repulsion = 19232.115345 eV Total energy + Delta-G solvation = -3283.784001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.52305 -41.21906 -39.25689 -36.26340 -34.62352 -33.86061 -32.00519 -30.81755 -30.52940 -29.20437 -25.93407 -25.20271 -24.52294 -23.12522 -22.43999 -20.92951 -20.07188 -19.02821 -18.53593 -17.70236 -17.05818 -16.90160 -16.82843 -16.09118 -15.83743 -15.42891 -15.36447 -15.05833 -14.54455 -14.46480 -14.24309 -14.03673 -13.46336 -13.31342 -13.11901 -12.81958 -12.71084 -12.62311 -12.26719 -12.18864 -11.86938 -11.75203 -11.48595 -11.17861 -10.96218 -10.89440 -10.60325 -9.83592 -9.61344 -8.98617 -8.24812 -5.18475 0.40619 1.09645 1.61382 1.70609 1.83805 1.87101 2.06528 2.20422 2.76993 3.48019 3.51646 3.66860 3.75427 3.90380 3.93331 4.02656 4.08088 4.21115 4.33700 4.49618 4.55743 4.64381 4.68649 4.73440 4.78497 4.91852 4.95957 4.99393 5.03719 5.07541 5.23171 5.26974 5.31670 5.48740 5.59081 5.76166 6.00938 6.38414 6.61198 7.03664 7.20582 8.11640 8.25049 9.26814 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.005610 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.542172 B = 4989.673853 C = 5729.184549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.192 3.808 3 N -0.735 5.735 4 C -0.297 4.297 5 H 0.069 0.931 6 C -0.108 4.108 7 N -0.985 5.985 8 Si 1.121 2.879 9 H -0.293 1.293 10 H -0.270 1.270 11 H -0.301 1.301 12 C -0.127 4.127 13 C 0.113 3.887 14 N -0.592 5.592 15 C 0.582 3.418 16 O -0.588 6.588 17 C -0.268 4.268 18 C -0.216 4.216 19 C -0.016 4.016 20 O -0.174 6.174 21 C 0.054 3.946 22 C 0.119 3.881 23 C -0.120 4.120 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.356 0.644 28 H 0.242 0.758 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.161 0.839 34 H 0.250 0.750 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -16.126 6.981 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.102 3.898 3 N -0.377 5.377 4 C -0.429 4.429 5 H 0.087 0.913 6 C -0.299 4.299 7 N -0.634 5.634 8 Si 0.948 3.052 9 H -0.221 1.221 10 H -0.195 1.195 11 H -0.229 1.229 12 C -0.167 4.167 13 C -0.009 4.009 14 N -0.323 5.323 15 C 0.373 3.627 16 O -0.472 6.472 17 C -0.272 4.272 18 C -0.235 4.235 19 C -0.081 4.081 20 O -0.069 6.069 21 C -0.016 4.016 22 C -0.004 4.004 23 C -0.158 4.158 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.189 0.811 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.266 0.734 35 H 0.252 0.748 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.003 -15.168 7.393 17.139 hybrid contribution -0.206 -0.517 -1.362 1.472 sum 2.797 -15.685 6.031 17.035 Atomic orbital electron populations 1.22108 0.96470 1.00658 1.00881 1.19796 0.92788 0.83887 0.93330 1.42681 1.61068 1.08197 1.25796 1.20184 1.27012 0.94322 1.01389 0.91292 1.26826 0.99796 0.98234 1.05063 1.70963 1.41879 1.38198 1.12394 0.82680 0.75146 0.74268 0.73114 1.22102 1.19539 1.22853 1.22200 0.94849 0.99876 0.99750 1.22086 0.94904 0.98550 0.85374 1.47920 1.41921 1.34209 1.08210 1.17739 0.78169 0.78837 0.87934 1.90716 1.63981 1.58193 1.34277 1.21435 1.12565 0.97333 0.95901 1.23203 1.06190 1.02003 0.92081 1.24669 1.01647 0.81124 1.00656 1.83861 1.64019 1.34700 1.24323 1.24678 0.94380 0.98495 0.84057 1.21451 0.94841 0.97822 0.86255 1.22019 0.94069 1.01310 0.98447 0.94194 0.91430 0.93967 0.81104 0.94780 0.91545 0.91129 0.87056 0.93046 0.82187 0.73432 0.74773 0.89621 0.93140 0.89856 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.44 71.98 0.61 -4.21 16 2 C 0.19 6.92 0.74 3.63 0.00 6.92 16 3 N -0.74 -33.64 4.14 -303.21 -1.25 -34.90 16 4 C -0.30 -15.22 8.68 84.03 0.73 -14.50 16 5 H 0.07 3.44 6.70 -2.91 -0.02 3.42 16 6 C -0.11 -6.00 5.50 84.86 0.47 -5.54 16 7 N -0.98 -60.17 13.70 21.65 0.30 -59.87 16 8 Si 1.12 50.59 29.92 68.60 2.05 52.64 16 9 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 C -0.13 -4.15 4.70 30.66 0.14 -4.01 16 13 C 0.11 3.70 5.03 86.36 0.43 4.13 16 14 N -0.59 -20.10 2.97 -822.88 -2.45 -22.55 16 15 C 0.58 19.82 7.65 86.65 0.66 20.48 16 16 O -0.59 -22.98 16.44 -4.07 -0.07 -23.05 16 17 C -0.27 -7.28 5.73 -18.99 -0.11 -7.39 16 18 C -0.22 -4.91 8.67 23.65 0.20 -4.71 16 19 C -0.02 -0.25 12.03 66.89 0.80 0.55 16 20 O -0.17 -3.23 10.52 4.42 0.05 -3.18 16 21 C 0.05 1.14 12.00 67.39 0.81 1.95 16 22 C 0.12 4.14 6.17 86.36 0.53 4.68 16 23 C -0.12 -3.85 4.96 30.67 0.15 -3.70 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.04 1.54 7.27 -2.39 -0.02 1.52 16 27 H 0.36 17.73 5.30 -92.71 -0.49 17.24 16 28 H 0.24 14.79 6.77 -92.71 -0.63 14.17 16 29 H 0.07 2.30 7.31 -2.38 -0.02 2.29 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.11 3.11 4.01 -2.39 -0.01 3.10 16 32 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 33 H 0.16 3.75 6.51 -2.91 -0.02 3.73 16 34 H 0.25 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.24 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.09 2.96 7.00 -2.39 -0.02 2.94 16 37 H 0.05 1.97 6.94 -2.39 -0.02 1.95 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.19 311.68 4.79 -64.39 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.72 Total: 31.85 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.44 Total: -5.35 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.40 Total: -117.32 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.02 Total: -26.23 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -69.19 4.79 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673938607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.333 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds