Wall clock time and date at job start Tue Mar 31 2020 00:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34174 * 125.43791 * 2 1 4 4 C 1.47029 * 105.95124 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.18947 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00327 * 353.68722 * 5 4 3 7 7 N 1.34776 * 119.99866 * 173.41128 * 5 4 3 8 8 C 1.47425 * 125.65102 * 355.01793 * 7 5 4 9 9 C 1.54908 * 104.83721 * 204.09564 * 8 7 5 10 10 C 1.55163 * 101.57915 * 322.99143 * 9 8 7 11 11 C 1.47020 * 125.65037 * 174.71140 * 7 5 4 12 12 H 1.09003 * 109.88449 * 59.56014 * 11 7 5 13 13 C 1.53002 * 109.88237 * 298.39452 * 11 7 5 14 14 N 1.46506 * 109.47079 * 175.09475 * 13 11 7 15 15 C 1.36933 * 120.00167 * 174.88101 * 14 13 11 16 16 H 1.08001 * 119.99529 * 4.97274 * 15 14 13 17 17 C 1.38807 * 120.00342 * 184.96817 * 15 14 13 18 18 N 1.31619 * 119.99960 * 184.48884 * 17 15 14 19 19 Si 1.86801 * 119.99940 * 4.49306 * 17 15 14 20 20 H 1.48504 * 109.46986 * 93.74274 * 19 17 15 21 21 H 1.48499 * 109.47224 * 213.74186 * 19 17 15 22 22 H 1.48493 * 109.46946 * 333.74381 * 19 17 15 23 23 C 1.36410 * 105.61600 * 0.22704 * 4 3 2 24 24 O 1.33654 * 108.39992 * 359.63017 * 23 4 3 25 25 H 1.09002 * 109.46812 * 89.99986 * 1 2 3 26 26 H 1.09001 * 109.47174 * 210.00185 * 1 2 3 27 27 H 1.09003 * 109.47055 * 330.00827 * 1 2 3 28 28 H 1.07994 * 127.02565 * 359.97438 * 3 2 1 29 29 H 1.09003 * 110.36519 * 322.93439 * 8 7 5 30 30 H 1.08998 * 110.36666 * 85.25248 * 8 7 5 31 31 H 1.08996 * 111.00586 * 81.05890 * 9 8 7 32 32 H 1.08995 * 111.00339 * 204.91561 * 9 8 7 33 33 H 1.08996 * 110.72156 * 153.86615 * 10 9 8 34 34 H 1.09004 * 110.71292 * 276.96321 * 10 9 8 35 35 H 1.08992 * 109.46851 * 295.09732 * 13 11 7 36 36 H 1.09001 * 109.47101 * 55.10329 * 13 11 7 37 37 H 0.96999 * 120.00215 * 354.89082 * 14 13 11 38 38 H 0.97002 * 120.00054 * 180.02562 * 18 17 15 39 39 H 1.07999 * 125.80442 * 179.77602 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9024 1.4123 0.0003 6 8 4.8355 2.6211 -0.1163 7 7 6.1025 0.8138 0.1349 8 6 6.3230 -0.6208 0.3932 9 6 7.7189 -0.6938 1.0608 10 6 8.4907 0.4100 0.2903 11 6 7.4087 1.4822 0.0423 12 1 7.4810 2.2615 0.8010 13 6 7.5844 2.0902 -1.3507 14 7 8.8346 2.8526 -1.3966 15 6 9.2582 3.4026 -2.5769 16 1 8.6326 3.3437 -3.4553 17 6 10.4915 4.0360 -2.6444 18 7 10.8606 4.6413 -3.7533 19 14 11.6274 4.0291 -1.1614 20 1 12.5742 2.8899 -1.2684 21 1 12.3890 5.3030 -1.1153 22 1 10.8221 3.8886 0.0782 23 6 3.5789 -0.7583 -0.0043 24 8 2.2852 -1.0936 0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 1.9596 2.1229 -0.0004 29 1 5.5590 -1.0066 1.0682 30 1 6.3204 -1.1795 -0.5428 31 1 7.6567 -0.4578 2.1231 32 1 8.1758 -1.6710 0.9053 33 1 9.3013 0.8103 0.8991 34 1 8.8739 0.0245 -0.6545 35 1 7.6172 1.2933 -2.0934 36 1 6.7465 2.7534 -1.5660 37 1 9.3625 2.9675 -0.5910 38 1 11.7227 5.0836 -3.8006 39 1 4.4102 -1.4478 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699748792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:25 Heat of formation + Delta-G solvation = 5.839829 kcal Electronic energy + Delta-G solvation = -21570.126655 eV Core-core repulsion = 18287.335636 eV Total energy + Delta-G solvation = -3282.791019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.75088 -39.98940 -37.35323 -34.74618 -33.27699 -32.67811 -31.48642 -31.19021 -29.23907 -26.85997 -25.57762 -24.30410 -22.19441 -21.92944 -21.00335 -20.64482 -19.24068 -17.58008 -17.05095 -16.72326 -16.40618 -16.24391 -15.15005 -14.40296 -14.33900 -14.01749 -13.78023 -13.68513 -13.43667 -13.31202 -13.18558 -12.89679 -12.83746 -12.72180 -12.35800 -12.00717 -11.64881 -11.32304 -11.16435 -10.88495 -10.69034 -10.53616 -10.08226 -9.90691 -9.83729 -9.56208 -8.84119 -8.77851 -8.55160 -7.16931 -5.72303 -3.07611 1.22034 1.88609 2.58723 2.95295 3.38370 3.39254 3.41256 3.47758 4.25273 4.42167 4.43535 4.62535 4.64390 4.76388 4.84362 5.03005 5.12644 5.15358 5.20794 5.32250 5.37957 5.40959 5.55890 5.58242 5.61863 5.73603 5.76700 5.78262 5.92656 6.00123 6.16768 6.26878 6.41995 6.72013 6.81119 6.91322 7.56950 8.05297 8.28895 8.46499 9.25992 9.97681 10.18416 11.46279 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.003995 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.700187 B = 7006.576273 C = 7629.240047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.162 4.162 4 C -0.219 4.219 5 C 0.597 3.403 6 O -0.522 6.522 7 N -0.609 5.609 8 C 0.086 3.914 9 C -0.132 4.132 10 C -0.125 4.125 11 C 0.129 3.871 12 H 0.077 0.923 13 C 0.150 3.850 14 N -0.752 5.752 15 C -0.239 4.239 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.888 3.112 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.002 3.998 24 O -0.175 6.175 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.362 0.638 38 H 0.259 0.741 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -16.790 12.257 26.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.181 4.181 4 C -0.224 4.224 5 C 0.386 3.614 6 O -0.399 6.399 7 N -0.343 5.343 8 C -0.037 4.037 9 C -0.170 4.170 10 C -0.163 4.163 11 C 0.026 3.974 12 H 0.095 0.905 13 C 0.022 3.978 14 N -0.399 5.399 15 C -0.369 4.369 16 H 0.106 0.894 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.718 3.282 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.068 4.068 24 O -0.072 6.072 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.195 0.805 38 H 0.069 0.931 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.195 -16.299 11.941 26.531 hybrid contribution 1.119 0.271 0.910 1.467 sum -16.076 -16.029 12.852 26.087 Atomic orbital electron populations 1.20322 0.84689 1.04133 1.03739 1.22318 0.94148 0.83691 1.06582 1.22511 0.89920 0.99800 1.05901 1.21501 0.94583 0.93283 1.13015 1.16889 0.81012 0.86701 0.76794 1.90842 1.86166 1.13609 1.49237 1.48305 1.05404 1.09111 1.71521 1.22660 0.98278 0.82764 0.99991 1.22795 0.94241 1.00074 0.99935 1.22721 0.97029 0.94899 1.01642 1.21845 0.80740 0.95107 0.99694 0.90510 1.20928 0.90187 0.94445 0.92226 1.42623 1.24059 1.64095 1.09099 1.19040 1.00768 1.28315 0.88798 0.89359 1.24683 0.97591 1.00269 0.96676 1.69715 1.22147 1.40295 1.26107 0.86488 0.81369 0.77174 0.83143 1.21136 1.21748 1.20479 1.25139 0.84110 0.95913 1.01601 1.83733 1.16579 1.35520 1.71335 0.89926 0.90478 0.89189 0.82320 0.90320 0.90806 0.90600 0.89643 0.89991 0.89502 0.95168 0.94443 0.80509 0.93098 0.76468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.19 7.28 -35.74 -0.26 -0.45 16 3 C -0.16 -2.00 10.90 -37.45 -0.41 -2.41 16 4 C -0.22 -2.97 6.24 -103.28 -0.64 -3.62 16 5 C 0.60 10.03 7.56 -12.54 -0.09 9.94 16 6 O -0.52 -11.09 16.18 5.26 0.09 -11.01 16 7 N -0.61 -8.92 3.06 -164.28 -0.50 -9.42 16 8 C 0.09 0.83 5.14 -2.53 -0.01 0.81 16 9 C -0.13 -1.22 7.09 -24.58 -0.17 -1.39 16 10 C -0.12 -1.66 6.23 -24.89 -0.16 -1.82 16 11 C 0.13 2.17 2.89 -66.95 -0.19 1.98 16 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.15 3.23 5.66 -4.04 -0.02 3.20 16 14 N -0.75 -18.82 5.19 -59.91 -0.31 -19.13 16 15 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 16 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.93 -30.13 13.97 55.49 0.78 -29.36 16 19 Si 0.89 22.52 27.99 -169.99 -4.76 17.76 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.59 6.18 56.52 0.35 -6.24 16 23 C 0.00 0.02 10.45 30.07 0.31 0.33 16 24 O -0.18 -1.83 10.52 7.63 0.08 -1.75 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.08 0.57 5.90 -51.93 -0.31 0.27 16 30 H 0.07 0.61 7.80 -51.93 -0.40 0.21 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.23 7.77 -51.93 -0.40 0.83 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.04 0.92 6.90 -51.93 -0.36 0.56 16 37 H 0.36 8.69 5.35 -40.82 -0.22 8.47 16 38 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 39 H 0.22 1.48 4.84 -52.49 -0.25 1.23 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -36.93 321.15 -6.68 -43.61 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.36 Total: 5.18 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.53 Total: -0.71 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.04 Total: -57.91 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.17 Total: -12.76 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.76 Total: 17.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.93 -6.68 -43.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699748792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.447 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds