Wall clock time and date at job start Tue Mar 31 2020 00:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34174 * 125.43791 * 2 1 4 4 C 1.47029 * 105.95124 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.18947 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00327 * 353.68722 * 5 4 3 7 7 N 1.34776 * 119.99866 * 173.41128 * 5 4 3 8 8 C 1.47425 * 125.65102 * 355.01793 * 7 5 4 9 9 C 1.54908 * 104.83721 * 204.09564 * 8 7 5 10 10 C 1.55163 * 101.57915 * 322.99143 * 9 8 7 11 11 C 1.47020 * 125.65037 * 174.71140 * 7 5 4 12 12 H 1.09003 * 109.88449 * 59.56014 * 11 7 5 13 13 C 1.53002 * 109.88237 * 298.39452 * 11 7 5 14 14 N 1.46506 * 109.47079 * 175.09475 * 13 11 7 15 15 C 1.36933 * 120.00167 * 174.88101 * 14 13 11 16 16 H 1.08001 * 119.99529 * 4.97274 * 15 14 13 17 17 C 1.38807 * 120.00342 * 184.96817 * 15 14 13 18 18 N 1.31619 * 119.99960 * 184.48884 * 17 15 14 19 19 Si 1.86801 * 119.99940 * 4.49306 * 17 15 14 20 20 H 1.48504 * 109.46986 * 93.74274 * 19 17 15 21 21 H 1.48499 * 109.47224 * 213.74186 * 19 17 15 22 22 H 1.48493 * 109.46946 * 333.74381 * 19 17 15 23 23 C 1.36410 * 105.61600 * 0.22704 * 4 3 2 24 24 O 1.33654 * 108.39992 * 359.63017 * 23 4 3 25 25 H 1.09002 * 109.46812 * 89.99986 * 1 2 3 26 26 H 1.09001 * 109.47174 * 210.00185 * 1 2 3 27 27 H 1.09003 * 109.47055 * 330.00827 * 1 2 3 28 28 H 1.07994 * 127.02565 * 359.97438 * 3 2 1 29 29 H 1.09003 * 110.36519 * 322.93439 * 8 7 5 30 30 H 1.08998 * 110.36666 * 85.25248 * 8 7 5 31 31 H 1.08996 * 111.00586 * 81.05890 * 9 8 7 32 32 H 1.08995 * 111.00339 * 204.91561 * 9 8 7 33 33 H 1.08996 * 110.72156 * 153.86615 * 10 9 8 34 34 H 1.09004 * 110.71292 * 276.96321 * 10 9 8 35 35 H 1.08992 * 109.46851 * 295.09732 * 13 11 7 36 36 H 1.09001 * 109.47101 * 55.10329 * 13 11 7 37 37 H 0.96999 * 120.00215 * 354.89082 * 14 13 11 38 38 H 0.97002 * 120.00054 * 180.02562 * 18 17 15 39 39 H 1.07999 * 125.80442 * 179.77602 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9024 1.4123 0.0003 6 8 4.8355 2.6211 -0.1163 7 7 6.1025 0.8138 0.1349 8 6 6.3230 -0.6208 0.3932 9 6 7.7189 -0.6938 1.0608 10 6 8.4907 0.4100 0.2903 11 6 7.4087 1.4822 0.0423 12 1 7.4810 2.2615 0.8010 13 6 7.5844 2.0902 -1.3507 14 7 8.8346 2.8526 -1.3966 15 6 9.2582 3.4026 -2.5769 16 1 8.6326 3.3437 -3.4553 17 6 10.4915 4.0360 -2.6444 18 7 10.8606 4.6413 -3.7533 19 14 11.6274 4.0291 -1.1614 20 1 12.5742 2.8899 -1.2684 21 1 12.3890 5.3030 -1.1153 22 1 10.8221 3.8886 0.0782 23 6 3.5789 -0.7583 -0.0043 24 8 2.2852 -1.0936 0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 1.9596 2.1229 -0.0004 29 1 5.5590 -1.0066 1.0682 30 1 6.3204 -1.1795 -0.5428 31 1 7.6567 -0.4578 2.1231 32 1 8.1758 -1.6710 0.9053 33 1 9.3013 0.8103 0.8991 34 1 8.8739 0.0245 -0.6545 35 1 7.6172 1.2933 -2.0934 36 1 6.7465 2.7534 -1.5660 37 1 9.3625 2.9675 -0.5910 38 1 11.7227 5.0836 -3.8006 39 1 4.4102 -1.4478 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699748792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:24 Heat of formation + Delta-G solvation = -21.129603 kcal Electronic energy + Delta-G solvation = -21571.296137 eV Core-core repulsion = 18287.335636 eV Total energy + Delta-G solvation = -3283.960501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.60813 -41.18134 -38.64666 -36.65217 -34.28079 -33.82637 -33.26930 -32.15395 -30.73057 -27.66384 -26.94170 -25.69886 -23.92798 -23.03957 -21.87882 -21.82246 -20.56844 -19.52115 -18.01610 -17.82781 -17.39507 -17.23688 -16.48409 -16.35945 -15.59267 -15.50631 -15.15840 -14.89350 -14.69947 -14.30045 -14.06226 -13.98853 -13.77801 -13.76930 -13.69400 -13.26766 -13.03136 -12.81661 -12.68150 -12.15188 -12.04395 -11.94393 -11.81176 -11.62834 -11.22715 -11.00945 -10.87314 -9.79305 -9.58242 -9.38084 -8.07891 -5.44130 0.29099 0.98617 1.34465 1.40974 1.48007 1.69240 1.95234 2.22003 2.45240 3.21600 3.33874 3.53191 3.61355 3.69509 3.72232 3.92276 3.94479 4.17891 4.26057 4.36341 4.42620 4.50306 4.58953 4.72455 4.73319 4.78744 4.84729 4.87039 4.98021 5.05740 5.07701 5.13108 5.31638 5.36660 5.38921 5.67761 5.97222 6.14567 6.42924 6.99575 7.06055 7.72607 7.97346 9.13863 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.003995 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.700187 B = 7006.576273 C = 7629.240047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.003 4.003 3 C -0.199 4.199 4 C -0.258 4.258 5 C 0.588 3.412 6 O -0.588 6.588 7 N -0.607 5.607 8 C 0.074 3.926 9 C -0.116 4.116 10 C -0.124 4.124 11 C 0.133 3.867 12 H 0.058 0.942 13 C 0.155 3.845 14 N -0.748 5.748 15 C -0.245 4.245 16 H 0.044 0.956 17 C -0.062 4.062 18 N -0.983 5.983 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.252 1.252 23 C 0.035 3.965 24 O -0.172 6.172 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.030 0.970 36 H -0.003 1.003 37 H 0.370 0.630 38 H 0.261 0.739 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 -20.483 14.901 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C -0.219 4.219 4 C -0.263 4.263 5 C 0.380 3.620 6 O -0.469 6.469 7 N -0.340 5.340 8 C -0.046 4.046 9 C -0.153 4.153 10 C -0.162 4.162 11 C 0.029 3.971 12 H 0.077 0.923 13 C 0.028 3.972 14 N -0.395 5.395 15 C -0.375 4.375 16 H 0.062 0.938 17 C -0.253 4.253 18 N -0.633 5.633 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.177 1.177 23 C -0.034 4.034 24 O -0.067 6.067 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.166 0.834 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.015 0.985 37 H 0.204 0.796 38 H 0.070 0.930 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -17.275 -20.073 14.616 30.248 hybrid contribution 1.023 1.424 -0.026 1.754 sum -16.252 -18.649 14.590 28.718 Atomic orbital electron populations 1.20542 0.81693 1.05665 1.05002 1.22906 0.95608 0.82640 1.03994 1.22616 0.90355 1.00406 1.08506 1.21368 0.93547 0.94720 1.16630 1.17482 0.82480 0.86346 0.75701 1.90792 1.87222 1.16482 1.52453 1.48397 1.03912 1.11315 1.70345 1.23125 0.99879 0.79615 1.02031 1.22822 0.92722 1.00036 0.99742 1.22704 0.96191 0.95071 1.02205 1.21650 0.83585 0.96348 0.95485 0.92337 1.20905 0.87220 0.93292 0.95828 1.42490 1.25015 1.64224 1.07804 1.18942 1.00578 1.28872 0.89156 0.93760 1.25631 0.99386 0.99660 1.00636 1.69915 1.22854 1.41380 1.29120 0.85244 0.78749 0.77407 0.79363 1.19248 1.22007 1.17659 1.25678 0.84842 0.94838 0.98078 1.83791 1.16640 1.35452 1.70828 0.88659 0.88557 0.88041 0.83379 0.87143 0.88636 0.89486 0.86101 0.89395 0.90274 0.95242 0.98510 0.79566 0.93025 0.72816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.40 71.24 0.74 0.06 16 2 C 0.00 -0.05 7.28 24.76 0.18 0.13 16 3 C -0.20 -5.02 10.90 23.65 0.26 -4.76 16 4 C -0.26 -6.93 6.24 -18.99 -0.12 -7.05 16 5 C 0.59 20.48 7.56 86.65 0.65 21.13 16 6 O -0.59 -27.07 16.18 -4.09 -0.07 -27.14 16 7 N -0.61 -17.37 3.06 -791.92 -2.43 -19.80 16 8 C 0.07 1.13 5.14 86.85 0.45 1.58 16 9 C -0.12 -1.58 7.09 31.99 0.23 -1.36 16 10 C -0.12 -2.97 6.23 31.79 0.20 -2.78 16 11 C 0.13 4.48 2.89 45.35 0.13 4.61 16 12 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 13 C 0.16 6.97 5.66 86.38 0.49 7.46 16 14 N -0.75 -38.32 5.19 -343.45 -1.78 -40.11 16 15 C -0.24 -15.10 10.47 84.03 0.88 -14.22 16 16 H 0.04 3.05 8.06 -2.91 -0.02 3.02 16 17 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.98 -65.34 13.97 21.65 0.30 -65.04 16 19 Si 0.97 46.44 27.99 68.60 1.92 48.36 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 22 H -0.25 -10.88 6.18 99.48 0.62 -10.26 16 23 C 0.04 0.62 10.45 67.39 0.70 1.32 16 24 O -0.17 -3.04 10.52 4.39 0.05 -3.00 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.11 1.03 5.90 -2.39 -0.01 1.02 16 30 H 0.10 1.12 7.80 -2.39 -0.02 1.10 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.05 7.77 -2.38 -0.02 2.03 16 35 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 36 H 0.00 -0.17 6.90 -2.39 -0.02 -0.18 16 37 H 0.37 17.56 5.35 -92.71 -0.50 17.06 16 38 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 39 H 0.26 2.19 4.84 -2.91 -0.01 2.17 16 Total: -1.00 -87.83 321.15 3.73 -84.10 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.48 Total: 19.81 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.26 Total: 2.81 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -3.91 Total: -124.94 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.02 Total: -30.14 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.92 Total: 48.36 kcal Total: -87.83 3.73 -84.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699748792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.968 kcal (2) G-P(sol) polarization free energy of solvation -87.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds