Wall clock time and date at job start Tue Mar 31 2020 00:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 110.64131 * 2 1 4 4 C 1.34778 * 119.99740 * 300.70073 * 3 2 1 5 5 O 1.21279 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99488 * 180.02562 * 4 3 2 7 7 C 1.50708 * 109.46734 * 180.02562 * 6 4 3 8 8 C 1.41383 * 126.58158 * 89.99684 * 7 6 4 9 9 C 1.34507 * 106.84025 * 179.97438 * 8 7 6 10 10 O 1.34307 * 108.42511 * 0.02562 * 9 8 7 11 11 C 1.34302 * 109.46996 * 359.76514 * 10 9 8 12 12 C 1.55157 * 110.71787 * 123.33844 * 2 1 3 13 13 C 1.54913 * 101.58038 * 153.86386 * 12 2 1 14 14 N 1.47425 * 104.83172 * 322.98898 * 13 12 2 15 15 C 1.36933 * 125.64766 * 204.09573 * 14 13 12 16 16 H 1.08004 * 120.00015 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99882 * 0.03934 * 15 14 13 18 18 N 1.31616 * 120.00475 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99871 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46856 * 119.99998 * 19 17 15 22 22 H 1.48496 * 109.47000 * 239.99691 * 19 17 15 23 23 C 1.47016 * 108.70144 * 24.12623 * 14 13 12 24 24 H 1.08994 * 109.47357 * 181.69159 * 1 2 3 25 25 H 1.08998 * 109.46865 * 301.68920 * 1 2 3 26 26 H 1.08994 * 109.46919 * 61.68745 * 1 2 3 27 27 H 0.96992 * 119.99913 * 120.70503 * 3 2 1 28 28 H 1.09002 * 109.47185 * 299.99623 * 6 4 3 29 29 H 1.08997 * 109.47512 * 59.99971 * 6 4 3 30 30 H 1.08000 * 126.57442 * 0.02562 * 8 7 6 31 31 H 1.07998 * 125.78882 * 180.02562 * 9 8 7 32 32 H 1.08003 * 125.79119 * 180.23624 * 11 10 9 33 33 H 1.09005 * 111.00262 * 271.93496 * 12 2 1 34 34 H 1.08993 * 111.01062 * 35.78843 * 12 2 1 35 35 H 1.08996 * 110.36871 * 204.14723 * 13 12 2 36 36 H 1.08998 * 110.36705 * 81.82672 * 13 12 2 37 37 H 0.96992 * 120.00529 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.88603 * 239.52323 * 23 14 13 39 39 H 1.09004 * 109.88125 * 118.36278 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7263 2.2116 -1.0036 5 8 1.0111 1.8330 -1.9070 6 6 2.2581 3.6217 -1.0039 7 6 1.7557 4.3477 -2.2253 8 6 0.5617 5.0980 -2.3278 9 6 0.5054 5.5706 -3.5859 10 8 1.5954 5.1483 -4.2472 11 6 2.3595 4.4102 -3.4256 12 6 2.0790 -0.7976 1.2124 13 6 3.4633 -1.2510 0.6854 14 7 3.2445 -1.5495 -0.7417 15 6 4.0042 -2.3945 -1.5059 16 1 3.7611 -2.5465 -2.5471 17 6 5.0866 -3.0558 -0.9422 18 7 5.3825 -2.8712 0.3270 19 14 6.1235 -4.2080 -1.9849 20 1 5.5858 -4.2420 -3.3687 21 1 7.5272 -3.7241 -2.0104 22 1 6.0813 -5.5740 -1.4042 23 6 2.0760 -0.7892 -1.2086 24 1 -0.3634 -1.0271 0.0303 25 1 -0.3633 0.5398 0.8744 26 1 -0.3633 0.4874 -0.9047 27 1 2.6188 1.6736 0.7222 28 1 1.9159 4.1392 -0.1077 29 1 3.3478 3.5991 -1.0167 30 1 -0.1650 5.2611 -1.5458 31 1 -0.2828 6.1853 -3.9949 32 1 3.2986 3.9441 -3.6852 33 1 2.1850 -0.1554 2.0868 34 1 1.4452 -1.6560 1.4347 35 1 3.7961 -2.1447 1.2132 36 1 4.1932 -0.4493 0.7976 37 1 6.1391 -3.3331 0.7208 38 1 1.3129 -1.4732 -1.5800 39 1 2.3741 -0.0991 -1.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699816148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:04 Heat of formation + Delta-G solvation = 8.545206 kcal Electronic energy + Delta-G solvation = -21923.492635 eV Core-core repulsion = 18640.818930 eV Total energy + Delta-G solvation = -3282.673705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.51835 -39.78807 -37.32048 -34.06194 -33.81588 -31.93191 -30.50833 -29.78357 -28.66406 -27.55050 -25.64776 -23.64422 -21.61743 -21.50103 -20.36555 -19.90289 -18.94282 -17.51944 -17.01998 -16.58812 -15.73293 -15.50973 -15.04622 -14.73855 -14.60444 -13.74203 -13.67913 -13.17937 -13.10367 -12.79829 -12.67543 -12.38683 -12.22241 -12.00224 -11.68306 -11.54237 -11.43323 -10.91896 -10.86353 -10.36968 -10.32390 -10.04701 -9.93272 -9.76224 -9.62213 -9.16306 -8.64405 -8.56283 -8.49389 -6.79615 -5.64181 -3.04367 1.80402 2.56169 2.99868 3.16616 3.40693 3.46792 3.49271 3.64519 4.51030 4.74270 4.79926 4.99227 5.07812 5.31843 5.38234 5.42996 5.48506 5.52316 5.59978 5.69193 5.76479 6.01198 6.07122 6.16551 6.19892 6.25596 6.39402 6.47198 6.50034 6.55108 6.74179 6.86389 7.12578 7.19500 7.46461 7.65516 7.82572 7.93672 8.36644 8.62953 9.24643 9.85365 10.50410 11.40203 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004446 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.073766 B = 6295.748972 C = 7050.143949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.160 3.840 3 N -0.711 5.711 4 C 0.514 3.486 5 O -0.530 6.530 6 C -0.073 4.073 7 C -0.159 4.159 8 C -0.198 4.198 9 C -0.049 4.049 10 O -0.178 6.178 11 C -0.026 4.026 12 C -0.146 4.146 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.216 4.216 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.138 3.862 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.397 0.603 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.199 0.801 32 H 0.200 0.800 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.010 0.990 37 H 0.250 0.750 38 H 0.029 0.971 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 15.635 0.615 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.362 5.362 4 C 0.299 3.701 5 O -0.406 6.406 6 C -0.113 4.113 7 C -0.161 4.161 8 C -0.217 4.217 9 C -0.117 4.117 10 O -0.074 6.074 11 C -0.094 4.094 12 C -0.185 4.185 13 C 0.028 3.972 14 N -0.331 5.331 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.231 0.769 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.162 0.838 31 H 0.216 0.784 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.364 15.270 -0.343 17.414 hybrid contribution 0.819 -0.470 0.097 0.949 sum -7.545 14.800 -0.246 16.614 Atomic orbital electron populations 1.22038 0.94400 1.02006 1.02335 1.21310 0.92902 0.80590 0.97809 1.45992 1.52060 1.12387 1.25750 1.20407 0.80916 0.86804 0.81939 1.90672 1.37031 1.77406 1.35511 1.20020 1.02076 0.92559 0.96630 1.19787 0.97049 1.03270 0.95972 1.21634 0.99311 1.02693 0.98081 1.23895 0.91342 1.04156 0.92274 1.84053 1.29212 1.54111 1.39998 1.23840 0.98189 0.98478 0.88854 1.23352 1.01244 0.98803 0.95147 1.21929 0.89384 1.00605 0.85278 1.44519 1.30761 1.50377 1.07403 1.19151 1.06010 1.16411 0.92920 0.90529 1.24751 0.98815 1.00773 0.96448 1.69782 1.30135 1.46578 1.10919 0.86007 0.80009 0.80401 0.79190 1.20547 1.21819 1.21760 1.21592 0.90207 0.93090 0.94007 0.91940 0.93288 0.90882 0.76948 0.88327 0.88170 0.83810 0.78434 0.78291 0.91940 0.90637 0.87493 0.97190 0.93882 0.95356 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.36 37.16 0.31 -2.10 16 2 C 0.16 2.87 0.81 -129.98 -0.11 2.77 16 3 N -0.71 -11.00 5.15 -45.91 -0.24 -11.24 16 4 C 0.51 8.08 7.04 -10.98 -0.08 8.01 16 5 O -0.53 -10.31 13.01 5.56 0.07 -10.24 16 6 C -0.07 -0.85 6.22 -29.03 -0.18 -1.03 16 7 C -0.16 -2.05 4.66 -104.74 -0.49 -2.54 16 8 C -0.20 -2.33 10.87 -39.70 -0.43 -2.77 16 9 C -0.05 -0.53 12.09 29.41 0.36 -0.18 16 10 O -0.18 -2.28 10.65 5.70 0.06 -2.22 16 11 C -0.03 -0.33 12.01 29.42 0.35 0.03 16 12 C -0.15 -2.66 6.09 -24.58 -0.15 -2.81 16 13 C 0.15 3.62 5.87 -2.53 -0.01 3.60 16 14 N -0.60 -15.75 3.39 -170.07 -0.58 -16.33 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 18 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C 0.14 3.12 6.16 -3.07 -0.02 3.10 16 24 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.29 6.27 -51.93 -0.33 0.96 16 27 H 0.40 5.15 8.49 -40.82 -0.35 4.81 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.20 2.11 8.06 -52.48 -0.42 1.68 16 33 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 35 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 39 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -33.83 321.34 -6.49 -40.32 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.49 Total: 4.50 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.70 Total: -0.71 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.25 Total: -53.81 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.13 Total: -12.46 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.83 -6.49 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699816148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.870 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds