Wall clock time and date at job start Tue Mar 31 2020 00:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 110.64131 * 2 1 4 4 C 1.34778 * 119.99740 * 300.70073 * 3 2 1 5 5 O 1.21279 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99488 * 180.02562 * 4 3 2 7 7 C 1.50708 * 109.46734 * 180.02562 * 6 4 3 8 8 C 1.41383 * 126.58158 * 89.99684 * 7 6 4 9 9 C 1.34507 * 106.84025 * 179.97438 * 8 7 6 10 10 O 1.34307 * 108.42511 * 0.02562 * 9 8 7 11 11 C 1.34302 * 109.46996 * 359.76514 * 10 9 8 12 12 C 1.55157 * 110.71787 * 123.33844 * 2 1 3 13 13 C 1.54913 * 101.58038 * 153.86386 * 12 2 1 14 14 N 1.47425 * 104.83172 * 322.98898 * 13 12 2 15 15 C 1.36933 * 125.64766 * 204.09573 * 14 13 12 16 16 H 1.08004 * 120.00015 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99882 * 0.03934 * 15 14 13 18 18 N 1.31616 * 120.00475 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99871 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47080 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46856 * 119.99998 * 19 17 15 22 22 H 1.48496 * 109.47000 * 239.99691 * 19 17 15 23 23 C 1.47016 * 108.70144 * 24.12623 * 14 13 12 24 24 H 1.08994 * 109.47357 * 181.69159 * 1 2 3 25 25 H 1.08998 * 109.46865 * 301.68920 * 1 2 3 26 26 H 1.08994 * 109.46919 * 61.68745 * 1 2 3 27 27 H 0.96992 * 119.99913 * 120.70503 * 3 2 1 28 28 H 1.09002 * 109.47185 * 299.99623 * 6 4 3 29 29 H 1.08997 * 109.47512 * 59.99971 * 6 4 3 30 30 H 1.08000 * 126.57442 * 0.02562 * 8 7 6 31 31 H 1.07998 * 125.78882 * 180.02562 * 9 8 7 32 32 H 1.08003 * 125.79119 * 180.23624 * 11 10 9 33 33 H 1.09005 * 111.00262 * 271.93496 * 12 2 1 34 34 H 1.08993 * 111.01062 * 35.78843 * 12 2 1 35 35 H 1.08996 * 110.36871 * 204.14723 * 13 12 2 36 36 H 1.08998 * 110.36705 * 81.82672 * 13 12 2 37 37 H 0.96992 * 120.00529 * 180.02562 * 18 17 15 38 38 H 1.09005 * 109.88603 * 239.52323 * 23 14 13 39 39 H 1.09004 * 109.88125 * 118.36278 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7263 2.2116 -1.0036 5 8 1.0111 1.8330 -1.9070 6 6 2.2581 3.6217 -1.0039 7 6 1.7557 4.3477 -2.2253 8 6 0.5617 5.0980 -2.3278 9 6 0.5054 5.5706 -3.5859 10 8 1.5954 5.1483 -4.2472 11 6 2.3595 4.4102 -3.4256 12 6 2.0790 -0.7976 1.2124 13 6 3.4633 -1.2510 0.6854 14 7 3.2445 -1.5495 -0.7417 15 6 4.0042 -2.3945 -1.5059 16 1 3.7611 -2.5465 -2.5471 17 6 5.0866 -3.0558 -0.9422 18 7 5.3825 -2.8712 0.3270 19 14 6.1235 -4.2080 -1.9849 20 1 5.5858 -4.2420 -3.3687 21 1 7.5272 -3.7241 -2.0104 22 1 6.0813 -5.5740 -1.4042 23 6 2.0760 -0.7892 -1.2086 24 1 -0.3634 -1.0271 0.0303 25 1 -0.3633 0.5398 0.8744 26 1 -0.3633 0.4874 -0.9047 27 1 2.6188 1.6736 0.7222 28 1 1.9159 4.1392 -0.1077 29 1 3.3478 3.5991 -1.0167 30 1 -0.1650 5.2611 -1.5458 31 1 -0.2828 6.1853 -3.9949 32 1 3.2986 3.9441 -3.6852 33 1 2.1850 -0.1554 2.0868 34 1 1.4452 -1.6560 1.4347 35 1 3.7961 -2.1447 1.2132 36 1 4.1932 -0.4493 0.7976 37 1 6.1391 -3.3331 0.7208 38 1 1.3129 -1.4732 -1.5800 39 1 2.3741 -0.0991 -1.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699816148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:04 Heat of formation + Delta-G solvation = -14.552660 kcal Electronic energy + Delta-G solvation = -21924.494234 eV Core-core repulsion = 18640.818930 eV Total energy + Delta-G solvation = -3283.675303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.41114 -41.16341 -38.88764 -35.72486 -34.87441 -33.62510 -31.92973 -30.99370 -30.33523 -28.54196 -27.54455 -25.40331 -22.79791 -22.44427 -22.15714 -20.96765 -20.38787 -19.02124 -18.34498 -17.89963 -17.08844 -16.71704 -16.66507 -16.22476 -15.60678 -15.58792 -15.09981 -14.58501 -14.44849 -14.04025 -13.95764 -13.63438 -13.52927 -13.41292 -13.25156 -13.06697 -12.83017 -12.78295 -12.37366 -12.06782 -12.02531 -11.93803 -11.67858 -11.51941 -10.82421 -10.76043 -10.38612 -9.94759 -9.39700 -8.88815 -7.79476 -5.22884 0.90503 1.44969 1.45369 1.56069 1.63496 1.79188 2.32621 2.45378 2.49147 3.29998 3.63090 3.71523 3.85112 3.97349 4.04296 4.11184 4.19414 4.23564 4.59189 4.63872 4.65464 4.68359 4.80428 4.84017 4.89755 4.94021 5.02282 5.11129 5.15054 5.32030 5.35027 5.42579 5.62771 5.63467 5.73981 5.81821 6.23646 6.30937 6.73228 7.11068 7.42710 7.76906 8.40400 9.21929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004446 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.073766 B = 6295.748972 C = 7050.143949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.171 3.829 3 N -0.705 5.705 4 C 0.510 3.490 5 O -0.571 6.571 6 C -0.064 4.064 7 C -0.175 4.175 8 C -0.216 4.216 9 C -0.048 4.048 10 O -0.193 6.193 11 C -0.049 4.049 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.068 0.932 17 C -0.059 4.059 18 N -0.943 5.943 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.137 3.863 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.411 0.589 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.161 0.839 31 H 0.235 0.765 32 H 0.209 0.791 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.075 0.925 36 H -0.004 1.004 37 H 0.249 0.751 38 H 0.016 0.984 39 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 16.854 1.599 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.084 3.916 3 N -0.358 5.358 4 C 0.298 3.702 5 O -0.450 6.450 6 C -0.103 4.103 7 C -0.176 4.176 8 C -0.235 4.235 9 C -0.114 4.114 10 O -0.089 6.089 11 C -0.116 4.116 12 C -0.166 4.166 13 C 0.030 3.970 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.086 0.914 17 C -0.251 4.251 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.213 1.213 23 C 0.011 3.989 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.248 0.752 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.179 0.821 31 H 0.251 0.749 32 H 0.226 0.774 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.014 0.986 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -9.038 16.514 0.667 18.837 hybrid contribution 1.023 -0.839 -0.256 1.347 sum -8.015 15.676 0.411 17.611 Atomic orbital electron populations 1.21944 0.92505 1.02502 1.02843 1.21089 0.94089 0.81343 0.95083 1.45915 1.52191 1.11241 1.26417 1.21118 0.80014 0.88111 0.80948 1.90660 1.38948 1.78440 1.36953 1.20046 1.02832 0.89777 0.97663 1.20091 0.97666 1.03543 0.96345 1.21962 0.99496 1.02994 0.99090 1.24678 0.91135 1.03471 0.92133 1.84048 1.29924 1.54354 1.40556 1.24181 0.99023 0.99168 0.89252 1.23199 0.97459 0.99638 0.96292 1.21761 0.92368 0.98766 0.84063 1.44794 1.31304 1.50391 1.08466 1.19397 1.07085 1.17572 0.93154 0.91427 1.25519 0.99789 1.02137 0.97701 1.70010 1.30223 1.47027 1.11986 0.85036 0.78169 0.78315 0.77950 1.19926 1.21545 1.21340 1.21663 0.88934 0.92605 0.95696 0.91671 0.90347 0.92543 0.75220 0.85058 0.86606 0.82148 0.74867 0.77410 0.87895 0.90173 0.90716 0.98618 0.94140 0.96643 0.97461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.36 71.98 0.60 -3.62 16 2 C 0.17 5.91 0.81 4.79 0.00 5.91 16 3 N -0.71 -20.49 5.15 -417.56 -2.15 -22.64 16 4 C 0.51 15.38 7.04 87.66 0.62 16.00 16 5 O -0.57 -22.13 13.01 -3.03 -0.04 -22.17 16 6 C -0.06 -1.35 6.22 29.10 0.18 -1.17 16 7 C -0.17 -4.28 4.66 -19.94 -0.09 -4.37 16 8 C -0.22 -4.72 10.87 22.19 0.24 -4.48 16 9 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 10 O -0.19 -4.81 10.65 -2.51 -0.03 -4.84 16 11 C -0.05 -1.23 12.01 66.97 0.80 -0.42 16 12 C -0.13 -4.36 6.09 31.99 0.19 -4.16 16 13 C 0.16 7.35 5.87 86.86 0.51 7.86 16 14 N -0.62 -33.16 3.39 -691.99 -2.35 -35.51 16 15 C -0.24 -14.21 10.27 84.03 0.86 -13.34 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 18 N -0.94 -55.37 10.09 21.65 0.22 -55.15 16 19 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 C 0.14 6.33 6.16 86.73 0.53 6.87 16 24 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.93 6.27 -2.39 -0.01 1.91 16 27 H 0.41 9.52 8.49 -92.71 -0.79 8.73 16 28 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.12 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.24 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.21 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.10 2.72 8.06 -2.38 -0.02 2.71 16 34 H 0.08 2.71 8.04 -2.39 -0.02 2.69 16 35 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.02 0.75 7.82 -2.38 -0.02 0.73 16 39 H 0.01 0.37 6.68 -2.38 -0.02 0.36 16 Total: -1.00 -75.25 321.34 3.68 -71.56 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.27 Total: 18.33 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.73 Total: 2.04 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.28 Total: -113.29 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.07 Total: -27.01 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.25 3.68 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699816148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.009 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds