Wall clock time and date at job start Tue Mar 31 2020 00:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.41385 * 126.58019 * 90.00472 * 7 6 4 9 9 C 1.34514 * 106.84028 * 179.97438 * 8 7 6 10 10 O 1.34296 * 108.42208 * 359.97438 * 9 8 7 11 11 C 1.34309 * 109.47842 * 359.77190 * 10 9 8 12 12 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 13 13 C 1.54325 * 102.94184 * 206.42607 * 12 2 1 14 14 N 1.47022 * 107.26948 * 22.19107 * 13 12 2 15 15 C 1.36945 * 125.64832 * 181.02381 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47423 * 108.70390 * 1.29074 * 14 13 12 24 24 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 25 25 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 26 26 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 27 27 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 28 28 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 29 29 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 30 30 H 1.07997 * 126.57973 * 359.92015 * 8 7 6 31 31 H 1.08005 * 125.78566 * 180.02562 * 9 8 7 32 32 H 1.07998 * 125.78779 * 180.23686 * 11 10 9 33 33 H 1.09000 * 110.72140 * 88.06437 * 12 2 1 34 34 H 1.08998 * 110.72520 * 324.78756 * 12 2 1 35 35 H 1.09002 * 109.88274 * 262.77538 * 13 12 2 36 36 H 1.09000 * 110.01178 * 141.68100 * 13 12 2 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09000 * 110.37068 * 94.48354 * 23 14 13 39 39 H 1.09005 * 110.36651 * 216.80519 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.2302 4.4735 3.4411 9 6 1.4073 5.2405 4.1786 10 8 0.3784 5.6241 3.4056 11 6 0.5311 5.1156 2.1719 12 6 2.0861 -0.8079 -1.2023 13 6 3.4674 -1.2742 -0.6961 14 7 3.4270 -1.2431 0.7733 15 6 4.4640 -1.5668 1.6072 16 1 4.3332 -1.5120 2.6778 17 6 5.6830 -1.9654 1.0763 18 7 5.8425 -2.0318 -0.2285 19 14 7.0977 -2.4063 2.2138 20 1 8.2800 -2.7972 1.4048 21 1 7.4398 -1.2322 3.0562 22 1 6.6975 -3.5406 3.0847 23 6 2.0835 -0.8120 1.2003 24 1 -0.3634 -1.0252 0.0699 25 1 -0.3633 0.5732 0.8529 26 1 -0.3634 0.4521 -0.9229 27 1 2.6639 1.6542 -0.6973 28 1 3.3113 3.6109 1.0392 29 1 1.9317 4.1389 0.0462 30 1 3.1474 4.0097 3.7729 31 1 1.5504 5.5039 5.2162 32 1 -0.1425 5.2622 1.3405 33 1 2.1922 -0.1699 -2.0797 34 1 1.4467 -1.6632 -1.4210 35 1 4.2426 -0.5999 -1.0600 36 1 3.6676 -2.2890 -1.0400 37 1 6.6945 -2.3100 -0.5994 38 1 1.4523 -1.6782 1.3988 39 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699816149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:10 Heat of formation + Delta-G solvation = -15.702824 kcal Electronic energy + Delta-G solvation = -22049.068655 eV Core-core repulsion = 18765.343476 eV Total energy + Delta-G solvation = -3283.725178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.40153 -41.10748 -38.87456 -35.64855 -34.86016 -33.62080 -31.93320 -31.02592 -30.31746 -28.51062 -27.50972 -25.41899 -22.85011 -22.44680 -22.02236 -20.94590 -20.39127 -19.00493 -18.32729 -17.85689 -17.03652 -16.69153 -16.63288 -16.20738 -15.67393 -15.57772 -15.18522 -14.69269 -14.32287 -13.97994 -13.85274 -13.66239 -13.52386 -13.36065 -13.34586 -13.02271 -12.81607 -12.74451 -12.37080 -12.11063 -12.04226 -11.96440 -11.68791 -11.54374 -10.79648 -10.71331 -10.36309 -9.91336 -9.38195 -8.86814 -7.86322 -5.20189 0.92298 1.43120 1.45567 1.52216 1.62538 1.81028 2.33291 2.47666 2.50476 3.31669 3.60380 3.71560 3.85160 3.98537 4.06787 4.12921 4.21485 4.23274 4.57598 4.64849 4.66355 4.71318 4.80791 4.87462 4.89191 4.93550 5.03074 5.10493 5.15386 5.34229 5.39350 5.41875 5.60231 5.65938 5.73344 5.81432 6.19632 6.23309 6.75649 7.11247 7.44321 7.76902 8.41376 9.23167 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.005085 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.851625 B = 5504.918479 C = 6552.552501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.168 3.832 3 N -0.701 5.701 4 C 0.512 3.488 5 O -0.571 6.571 6 C -0.065 4.065 7 C -0.179 4.179 8 C -0.230 4.230 9 C -0.043 4.043 10 O -0.188 6.188 11 C -0.033 4.033 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.066 0.934 17 C -0.057 4.057 18 N -0.945 5.945 19 Si 0.973 3.027 20 H -0.288 1.288 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.130 3.870 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.409 0.591 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.232 0.768 32 H 0.229 0.771 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.020 0.980 36 H 0.007 0.993 37 H 0.248 0.752 38 H 0.020 0.980 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 14.616 -1.356 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 N -0.352 5.352 4 C 0.300 3.700 5 O -0.450 6.450 6 C -0.104 4.104 7 C -0.181 4.181 8 C -0.249 4.249 9 C -0.110 4.110 10 O -0.084 6.084 11 C -0.100 4.100 12 C -0.166 4.166 13 C 0.060 3.940 14 N -0.347 5.347 15 C -0.373 4.373 16 H 0.084 0.916 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.802 3.198 20 H -0.214 1.214 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.004 3.996 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.244 0.756 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.683 14.461 -0.670 17.992 hybrid contribution 1.720 -0.830 0.454 1.963 sum -8.963 13.631 -0.216 16.315 Atomic orbital electron populations 1.21942 0.92126 1.02836 1.03146 1.21315 0.94012 0.81377 0.95193 1.45802 1.48902 1.10978 1.29562 1.21034 0.80490 0.88016 0.80471 1.90625 1.37410 1.79380 1.37601 1.20027 1.02102 0.90061 0.98244 1.20058 0.98482 1.03361 0.96206 1.21955 1.03489 1.04715 0.94741 1.24514 0.87025 1.01089 0.98357 1.84045 1.42873 1.60465 1.20993 1.24306 0.99255 0.99571 0.86875 1.23091 0.96728 0.99995 0.96834 1.20956 0.93024 0.97426 0.82599 1.44683 1.08314 1.78987 1.02677 1.19270 0.90762 1.38075 0.89241 0.91565 1.25503 0.99879 1.02142 0.97497 1.70137 1.24353 1.54411 1.10434 0.85239 0.78778 0.78065 0.77760 1.21378 1.20669 1.20751 1.22012 0.86315 0.94896 0.96376 0.91351 0.91986 0.90430 0.75550 0.87753 0.84648 0.84165 0.75143 0.75499 0.88250 0.89379 0.96167 0.97493 0.94261 0.96202 0.95876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.59 71.98 0.62 -3.50 16 2 C 0.17 5.76 0.82 5.07 0.00 5.76 16 3 N -0.70 -21.42 5.19 -416.31 -2.16 -23.58 16 4 C 0.51 16.05 7.21 87.66 0.63 16.69 16 5 O -0.57 -22.23 12.87 -3.02 -0.04 -22.27 16 6 C -0.06 -1.50 6.22 29.10 0.18 -1.32 16 7 C -0.18 -4.59 4.66 -19.94 -0.09 -4.68 16 8 C -0.23 -6.10 10.87 22.19 0.24 -5.85 16 9 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 10 O -0.19 -4.45 10.65 -2.47 -0.03 -4.48 16 11 C -0.03 -0.73 12.01 66.97 0.80 0.08 16 12 C -0.13 -4.29 5.97 31.78 0.19 -4.10 16 13 C 0.18 8.79 5.37 86.73 0.47 9.25 16 14 N -0.62 -32.63 3.39 -691.55 -2.35 -34.97 16 15 C -0.24 -14.24 10.28 84.03 0.86 -13.37 16 16 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 17 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 18 N -0.94 -56.03 10.31 21.65 0.22 -55.80 16 19 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 C 0.13 5.89 6.18 86.93 0.54 6.42 16 24 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 25 H 0.06 2.05 5.92 -2.39 -0.01 2.04 16 26 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.41 10.67 8.51 -92.71 -0.79 9.89 16 28 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.23 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.10 2.67 8.09 -2.39 -0.02 2.65 16 34 H 0.09 2.71 8.04 -2.39 -0.02 2.69 16 35 H 0.02 1.05 7.38 -2.39 -0.02 1.03 16 36 H 0.01 0.37 7.50 -2.39 -0.02 0.35 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 39 H 0.02 1.15 6.89 -2.38 -0.02 1.13 16 Total: -1.00 -75.29 322.14 3.66 -71.63 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.27 Total: 18.50 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.72 Total: 2.43 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.28 Total: -114.35 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.29 3.66 -71.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699816149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.925 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds