Wall clock time and date at job start Tue Mar 31 2020 01:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40366 * 126.64460 * 2 1 4 4 C 1.35127 * 107.11507 * 179.97438 * 3 2 1 5 5 O 1.33935 * 108.76764 * 359.75567 * 4 3 2 6 6 C 1.34911 * 109.38188 * 0.40558 * 5 4 3 7 7 C 1.46658 * 125.98766 * 179.86638 * 6 5 4 8 8 O 1.21693 * 120.00363 * 179.68817 * 7 6 5 9 9 N 1.34777 * 119.99664 * 359.68076 * 7 6 5 10 10 C 1.46504 * 119.99775 * 179.72962 * 9 7 6 11 11 C 1.53005 * 109.47152 * 176.14642 * 10 9 7 12 12 N 1.46500 * 112.84614 * 292.02467 * 11 10 9 13 13 C 1.36939 * 120.00107 * 294.78126 * 12 11 10 14 14 H 1.08001 * 120.00019 * 353.81981 * 13 12 11 15 15 C 1.38807 * 120.00219 * 173.81810 * 13 12 11 16 16 N 1.31621 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47089 * 90.00200 * 17 15 13 19 19 H 1.48502 * 109.47204 * 210.00197 * 17 15 13 20 20 H 1.48503 * 109.47089 * 330.00445 * 17 15 13 21 21 C 1.53776 * 113.61359 * 160.71825 * 11 10 9 22 22 C 1.53783 * 87.08258 * 220.01688 * 21 11 10 23 23 C 1.53778 * 87.07802 * 25.43292 * 22 21 11 24 24 H 1.09003 * 109.46996 * 270.02517 * 1 2 3 25 25 H 1.08999 * 109.47353 * 30.02713 * 1 2 3 26 26 H 1.09005 * 109.47085 * 150.02898 * 1 2 3 27 27 H 1.07995 * 126.44123 * 359.97438 * 3 2 1 28 28 H 1.08005 * 125.61810 * 180.02562 * 4 3 2 29 29 H 0.96992 * 120.00634 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.46854 * 296.14343 * 10 9 7 31 31 H 1.08995 * 109.47332 * 56.14057 * 10 9 7 32 32 H 0.96992 * 120.00012 * 114.78276 * 12 11 10 33 33 H 0.96998 * 119.99356 * 179.97438 * 16 15 13 34 34 H 1.08999 * 113.61780 * 334.56688 * 21 11 10 35 35 H 1.09002 * 113.61671 * 105.47134 * 21 11 10 36 36 H 1.09001 * 113.61191 * 270.88513 * 22 21 11 37 37 H 1.08996 * 113.61560 * 139.98384 * 22 21 11 38 38 H 1.09003 * 113.61524 * 220.01831 * 23 22 21 39 39 H 1.09007 * 113.61439 * 89.11488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0063 6 6 2.3220 -1.0955 0.0005 7 6 1.8843 -2.4952 0.0013 8 8 0.6968 -2.7615 0.0013 9 7 2.7972 -3.4867 0.0017 10 6 2.3599 -4.8850 0.0084 11 6 3.5810 -5.8017 -0.0894 12 7 4.2534 -5.7167 -1.3882 13 6 3.6084 -6.1341 -2.5218 14 1 2.6453 -6.6173 -2.4482 15 6 4.1923 -5.9361 -3.7654 16 7 3.5721 -6.3368 -4.8550 17 14 5.8577 -5.0996 -3.8928 18 1 6.9319 -6.1230 -3.8276 19 1 5.9475 -4.3692 -5.1826 20 1 6.0178 -4.1418 -2.7692 21 6 3.3078 -7.2430 0.3719 22 6 4.6959 -7.2110 1.0330 23 6 4.5379 -5.6832 1.1086 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 2.0306 2.1595 -0.0004 28 1 4.5046 1.2917 0.0011 29 1 3.7436 -3.2746 0.0019 30 1 1.8226 -5.0931 0.9337 31 1 1.7021 -5.0640 -0.8419 32 1 5.1555 -5.3649 -1.4452 33 1 3.9800 -6.1980 -5.7240 34 1 2.4868 -7.3253 1.0841 35 1 3.2312 -7.9568 -0.4483 36 1 5.5012 -7.5346 0.3735 37 1 4.7261 -7.6957 2.0088 38 1 5.4543 -5.1378 0.8832 39 1 4.0531 -5.3390 2.0222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700127652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:21 Heat of formation + Delta-G solvation = 11.570119 kcal Electronic energy + Delta-G solvation = -21941.432573 eV Core-core repulsion = 18658.890039 eV Total energy + Delta-G solvation = -3282.542535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67142 -39.53430 -38.43216 -34.52501 -33.65071 -33.29254 -30.70476 -30.42193 -28.24690 -26.78239 -25.37205 -23.78998 -22.73063 -21.70889 -20.95007 -19.81037 -18.44097 -17.91189 -17.62881 -16.34792 -16.03306 -15.68833 -15.09746 -14.61152 -14.36697 -14.22951 -13.90790 -13.33240 -13.08997 -13.04668 -12.94269 -12.70352 -12.51627 -12.33352 -11.90383 -11.76104 -11.48241 -11.20979 -10.94810 -10.47538 -10.28935 -10.18493 -9.86276 -9.72564 -9.68897 -9.53045 -8.93349 -8.80606 -8.43213 -7.35281 -5.81062 -3.18805 1.14976 2.32907 2.78206 3.32881 3.34692 3.39835 3.41795 3.56051 4.54152 4.68607 4.76541 4.96202 4.98530 5.07094 5.18493 5.29733 5.40398 5.43115 5.51712 5.66940 5.73775 5.75582 5.93427 6.01165 6.02872 6.09661 6.15182 6.19559 6.20605 6.41095 6.48508 6.62706 6.76543 6.81357 6.87974 6.96072 7.82181 7.95551 8.37329 8.41590 9.14416 9.86212 10.04253 11.36745 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.005855 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.177694 B = 4780.943345 C = 5503.136653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.097 4.097 3 C -0.225 4.225 4 C -0.012 4.012 5 O -0.162 6.162 6 C -0.074 4.074 7 C 0.597 3.403 8 O -0.526 6.526 9 N -0.696 5.696 10 C 0.118 3.882 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.242 4.242 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.880 3.120 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.207 0.793 29 H 0.402 0.598 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 11.363 13.857 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.244 4.244 4 C -0.082 4.082 5 O -0.057 6.057 6 C -0.126 4.126 7 C 0.382 3.618 8 O -0.405 6.405 9 N -0.344 5.344 10 C -0.007 4.007 11 C 0.085 3.915 12 N -0.366 5.366 13 C -0.371 4.371 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.576 5.576 17 Si 0.711 3.289 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.186 4.186 22 C -0.167 4.167 23 C -0.186 4.186 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.224 0.776 29 H 0.236 0.764 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.138 10.831 13.648 17.424 hybrid contribution 1.749 1.032 -0.412 2.072 sum 1.886 11.863 13.236 17.875 Atomic orbital electron populations 1.20402 0.88299 1.03619 1.02622 1.20615 0.97667 0.90973 1.00710 1.21701 0.92486 1.00002 1.10259 1.24301 0.99862 0.80805 1.03193 1.84084 1.28573 1.22569 1.70520 1.22105 0.81277 0.95224 1.13973 1.16521 0.85938 0.81738 0.77583 1.90818 1.15728 1.82279 1.51694 1.45702 1.09594 1.06541 1.72543 1.21959 0.98430 0.78837 1.01480 1.20753 0.91073 0.93545 0.86090 1.42402 1.15291 1.76951 1.01972 1.18932 1.03593 1.31616 0.82990 0.88970 1.24664 0.98091 1.00658 0.95256 1.69696 1.38601 1.52009 0.97293 0.86620 0.85513 0.79694 0.77103 1.21128 1.21803 1.20277 1.23272 0.96141 0.98972 1.00254 1.22653 0.98645 0.95558 0.99846 1.23210 0.99686 0.97411 0.98298 0.91060 0.91730 0.89304 0.82893 0.77606 0.76392 0.92212 0.90160 0.80338 0.93013 0.90924 0.90178 0.90142 0.92425 0.91864 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.82 36.01 0.35 -0.83 16 2 C -0.10 -1.37 6.20 -104.43 -0.65 -2.02 16 3 C -0.23 -2.54 10.83 -39.89 -0.43 -2.97 16 4 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 5 O -0.16 -2.32 10.40 4.99 0.05 -2.27 16 6 C -0.07 -1.18 7.13 -36.80 -0.26 -1.45 16 7 C 0.60 10.84 7.79 -12.86 -0.10 10.74 16 8 O -0.53 -10.64 14.74 5.20 0.08 -10.57 16 9 N -0.70 -12.12 5.43 -61.62 -0.33 -12.45 16 10 C 0.12 2.14 5.08 -4.04 -0.02 2.12 16 11 C 0.18 3.17 0.82 -131.01 -0.11 3.06 16 12 N -0.72 -15.89 4.98 -46.48 -0.23 -16.12 16 13 C -0.24 -6.49 9.53 -15.06 -0.14 -6.63 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 17 Si 0.88 21.62 27.68 -169.99 -4.70 16.91 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -6.35 6.61 56.52 0.37 -5.98 16 21 C -0.15 -2.41 7.28 -25.92 -0.19 -2.60 16 22 C -0.13 -1.88 7.99 -25.92 -0.21 -2.09 16 23 C -0.15 -2.12 6.98 -25.92 -0.18 -2.30 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.34 6.44 -51.93 -0.33 1.00 16 27 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.21 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.40 6.58 7.98 -40.82 -0.33 6.25 16 30 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 31 H 0.08 1.73 7.80 -51.93 -0.41 1.33 16 32 H 0.36 7.89 5.80 -40.82 -0.24 7.66 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 35 H 0.08 1.52 7.87 -51.93 -0.41 1.11 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.89 8.09 -51.93 -0.42 0.46 16 39 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -32.28 328.21 -6.60 -38.88 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.51 Total: 13.26 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.67 Total: -4.56 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.21 Total: -56.61 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.13 Total: -12.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.70 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.28 -6.60 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700127652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.452 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds