Wall clock time and date at job start Tue Mar 31 2020 01:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40366 * 126.64460 * 2 1 4 4 C 1.35127 * 107.11507 * 179.97438 * 3 2 1 5 5 O 1.33935 * 108.76764 * 359.75567 * 4 3 2 6 6 C 1.34911 * 109.38188 * 0.40558 * 5 4 3 7 7 C 1.46658 * 125.98766 * 179.86638 * 6 5 4 8 8 O 1.21693 * 120.00363 * 179.68817 * 7 6 5 9 9 N 1.34777 * 119.99664 * 359.68076 * 7 6 5 10 10 C 1.46504 * 119.99775 * 179.72962 * 9 7 6 11 11 C 1.53005 * 109.47152 * 176.14642 * 10 9 7 12 12 N 1.46500 * 112.84614 * 292.02467 * 11 10 9 13 13 C 1.36939 * 120.00107 * 294.78126 * 12 11 10 14 14 H 1.08001 * 120.00019 * 353.81981 * 13 12 11 15 15 C 1.38807 * 120.00219 * 173.81810 * 13 12 11 16 16 N 1.31621 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99915 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47089 * 90.00200 * 17 15 13 19 19 H 1.48502 * 109.47204 * 210.00197 * 17 15 13 20 20 H 1.48503 * 109.47089 * 330.00445 * 17 15 13 21 21 C 1.53776 * 113.61359 * 160.71825 * 11 10 9 22 22 C 1.53783 * 87.08258 * 220.01688 * 21 11 10 23 23 C 1.53778 * 87.07802 * 25.43292 * 22 21 11 24 24 H 1.09003 * 109.46996 * 270.02517 * 1 2 3 25 25 H 1.08999 * 109.47353 * 30.02713 * 1 2 3 26 26 H 1.09005 * 109.47085 * 150.02898 * 1 2 3 27 27 H 1.07995 * 126.44123 * 359.97438 * 3 2 1 28 28 H 1.08005 * 125.61810 * 180.02562 * 4 3 2 29 29 H 0.96992 * 120.00634 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.46854 * 296.14343 * 10 9 7 31 31 H 1.08995 * 109.47332 * 56.14057 * 10 9 7 32 32 H 0.96992 * 120.00012 * 114.78276 * 12 11 10 33 33 H 0.96998 * 119.99356 * 179.97438 * 16 15 13 34 34 H 1.08999 * 113.61780 * 334.56688 * 21 11 10 35 35 H 1.09002 * 113.61671 * 105.47134 * 21 11 10 36 36 H 1.09001 * 113.61191 * 270.88513 * 22 21 11 37 37 H 1.08996 * 113.61560 * 139.98384 * 22 21 11 38 38 H 1.09003 * 113.61524 * 220.01831 * 23 22 21 39 39 H 1.09007 * 113.61439 * 89.11488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0063 6 6 2.3220 -1.0955 0.0005 7 6 1.8843 -2.4952 0.0013 8 8 0.6968 -2.7615 0.0013 9 7 2.7972 -3.4867 0.0017 10 6 2.3599 -4.8850 0.0084 11 6 3.5810 -5.8017 -0.0894 12 7 4.2534 -5.7167 -1.3882 13 6 3.6084 -6.1341 -2.5218 14 1 2.6453 -6.6173 -2.4482 15 6 4.1923 -5.9361 -3.7654 16 7 3.5721 -6.3368 -4.8550 17 14 5.8577 -5.0996 -3.8928 18 1 6.9319 -6.1230 -3.8276 19 1 5.9475 -4.3692 -5.1826 20 1 6.0178 -4.1418 -2.7692 21 6 3.3078 -7.2430 0.3719 22 6 4.6959 -7.2110 1.0330 23 6 4.5379 -5.6832 1.1086 24 1 -0.3633 0.0005 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 2.0306 2.1595 -0.0004 28 1 4.5046 1.2917 0.0011 29 1 3.7436 -3.2746 0.0019 30 1 1.8226 -5.0931 0.9337 31 1 1.7021 -5.0640 -0.8419 32 1 5.1555 -5.3649 -1.4452 33 1 3.9800 -6.1980 -5.7240 34 1 2.4868 -7.3253 1.0841 35 1 3.2312 -7.9568 -0.4483 36 1 5.5012 -7.5346 0.3735 37 1 4.7261 -7.6957 2.0088 38 1 5.4543 -5.1378 0.8832 39 1 4.0531 -5.3390 2.0222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700127652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:21 Heat of formation + Delta-G solvation = -11.664841 kcal Electronic energy + Delta-G solvation = -21942.440117 eV Core-core repulsion = 18658.890039 eV Total energy + Delta-G solvation = -3283.550078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.66650 -40.93927 -39.82613 -35.75065 -35.28579 -34.82605 -32.60374 -31.52788 -29.50666 -28.01563 -26.71833 -25.58504 -24.00447 -22.94263 -22.07465 -21.02971 -19.94672 -19.63286 -19.10853 -17.43365 -17.14672 -17.04352 -16.53860 -16.27761 -15.83526 -15.68602 -15.22724 -14.75102 -14.53762 -14.42899 -14.10763 -13.89056 -13.87943 -13.52249 -13.22800 -13.12079 -13.00038 -12.79383 -12.56899 -12.24351 -11.81823 -11.65531 -11.58894 -11.27506 -10.96731 -10.82551 -10.66840 -10.19738 -9.54765 -9.31812 -8.01492 -5.36076 0.04628 1.34912 1.39199 1.42070 1.46005 1.73039 2.10827 2.30982 2.47660 3.27644 3.42563 3.71663 3.75249 3.82491 3.92577 3.94510 4.04054 4.16243 4.53529 4.57677 4.62642 4.70106 4.75281 4.77571 4.84691 4.89656 4.97866 5.10064 5.11180 5.19667 5.28149 5.34889 5.40937 5.49929 5.63338 5.83222 5.88987 6.22359 6.49185 7.05814 7.08516 7.82608 8.01438 9.20177 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.005855 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.177694 B = 4780.943345 C = 5503.136653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.097 4.097 3 C -0.232 4.232 4 C 0.009 3.991 5 O -0.175 6.175 6 C -0.119 4.119 7 C 0.590 3.410 8 O -0.561 6.561 9 N -0.693 5.693 10 C 0.128 3.872 11 C 0.158 3.842 12 N -0.724 5.724 13 C -0.214 4.214 14 H 0.052 0.948 15 C -0.066 4.066 16 N -0.986 5.986 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.304 1.304 20 H -0.247 1.247 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.127 4.127 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.187 0.813 28 H 0.256 0.744 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.368 0.632 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 14.002 16.512 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.251 4.251 4 C -0.060 4.060 5 O -0.071 6.071 6 C -0.170 4.170 7 C 0.378 3.622 8 O -0.443 6.443 9 N -0.342 5.342 10 C 0.002 3.998 11 C 0.067 3.933 12 N -0.366 5.366 13 C -0.345 4.345 14 H 0.070 0.930 15 C -0.257 4.257 16 N -0.636 5.636 17 Si 0.779 3.221 18 H -0.203 1.203 19 H -0.231 1.231 20 H -0.171 1.171 21 C -0.189 4.189 22 C -0.157 4.157 23 C -0.165 4.165 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.204 0.796 28 H 0.272 0.728 29 H 0.244 0.756 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.202 0.798 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.506 13.476 16.380 21.359 hybrid contribution 0.905 0.269 -1.167 1.501 sum 3.411 13.745 15.213 20.784 Atomic orbital electron populations 1.20417 0.87988 1.03347 1.03194 1.21044 0.98322 0.91759 0.98914 1.22088 0.92082 1.00661 1.10245 1.25377 1.01580 0.79588 0.99428 1.84061 1.27568 1.24451 1.70982 1.21703 0.82629 0.94356 1.18326 1.16891 0.85589 0.82944 0.76749 1.90786 1.17011 1.83206 1.53301 1.45649 1.09880 1.06053 1.72572 1.21774 0.97966 0.79696 1.00326 1.21131 0.92034 0.94404 0.85723 1.42298 1.15444 1.76654 1.02205 1.18794 1.01803 1.29155 0.84747 0.92957 1.25491 1.02658 1.02650 0.94872 1.69899 1.40997 1.54902 0.97844 0.85460 0.80363 0.79015 0.77249 1.20309 1.23119 1.17121 1.23318 0.98883 0.96765 0.99934 1.22597 0.96246 0.95990 1.00828 1.23164 0.98965 0.97430 0.96919 0.90031 0.89134 0.92338 0.79614 0.72789 0.75625 0.90266 0.94988 0.79779 0.93605 0.88567 0.93726 0.91429 0.89225 0.90727 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.32 9.82 71.24 0.70 -1.62 16 2 C -0.10 -2.62 6.20 -19.74 -0.12 -2.74 16 3 C -0.23 -4.37 10.83 22.07 0.24 -4.13 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.17 -4.59 10.40 -5.05 -0.05 -4.64 16 6 C -0.12 -3.73 7.13 24.07 0.17 -3.56 16 7 C 0.59 21.90 7.79 86.44 0.67 22.57 16 8 O -0.56 -23.80 14.74 -4.33 -0.06 -23.86 16 9 N -0.69 -24.15 5.43 -467.09 -2.54 -26.69 16 10 C 0.13 4.72 5.08 86.38 0.44 5.16 16 11 C 0.16 5.52 0.82 4.13 0.00 5.52 16 12 N -0.72 -31.70 4.98 -300.97 -1.50 -33.20 16 13 C -0.21 -11.94 9.53 84.03 0.80 -11.14 16 14 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 15 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 16 N -0.99 -64.07 13.97 21.65 0.30 -63.77 16 17 Si 0.95 45.11 27.68 68.60 1.90 47.01 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 20 H -0.25 -10.34 6.61 99.48 0.66 -9.68 16 21 C -0.15 -4.81 7.28 31.12 0.23 -4.58 16 22 C -0.12 -3.11 7.99 31.12 0.25 -2.87 16 23 C -0.13 -3.21 6.98 31.12 0.22 -3.00 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.83 6.44 -2.38 -0.02 1.81 16 27 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.26 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.41 12.90 7.98 -92.71 -0.74 12.16 16 30 H 0.08 2.58 8.01 -2.39 -0.02 2.56 16 31 H 0.03 1.47 7.80 -2.39 -0.02 1.45 16 32 H 0.37 15.37 5.80 -92.71 -0.54 14.83 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.10 2.63 8.01 -2.39 -0.02 2.61 16 35 H 0.04 1.74 7.87 -2.39 -0.02 1.72 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 39 H 0.11 2.25 8.10 -2.38 -0.02 2.23 16 Total: -1.00 -76.04 328.21 2.67 -73.38 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.25 Total: 34.58 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.87 Total: -2.81 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -3.74 Total: -123.65 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.12 Total: -28.50 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -76.04 2.67 -73.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700127652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.713 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds