Wall clock time and date at job start Tue Mar 31 2020 00:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33658 * 125.80404 * 2 1 4 4 C 1.34216 * 110.90844 * 179.78525 * 3 2 1 5 5 C 1.34177 * 109.12581 * 0.39208 * 4 3 2 6 6 C 1.36420 * 125.80255 * 180.02562 * 2 1 3 7 7 C 1.47378 * 127.19150 * 359.94475 * 6 2 1 8 8 O 1.21617 * 119.99733 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00246 * 180.02562 * 7 6 2 10 10 C 1.46502 * 120.00261 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 176.09164 * 10 9 7 12 12 N 1.46499 * 112.84693 * 294.03576 * 11 10 9 13 13 C 1.36931 * 120.00155 * 294.81736 * 12 11 10 14 14 H 1.07996 * 120.00324 * 353.93993 * 13 12 11 15 15 C 1.38811 * 120.00043 * 173.93984 * 13 12 11 16 16 N 1.31624 * 119.99934 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46699 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46963 * 119.99806 * 17 15 13 20 20 H 1.48492 * 109.47402 * 240.00119 * 17 15 13 21 21 C 1.53776 * 113.61181 * 162.84011 * 11 10 9 22 22 C 1.53960 * 87.01762 * 220.04827 * 21 11 10 23 23 C 1.53773 * 113.61119 * 65.23242 * 11 10 9 24 24 H 1.08998 * 109.47621 * 269.97794 * 1 2 3 25 25 H 1.09002 * 109.47286 * 29.97632 * 1 2 3 26 26 H 1.09006 * 109.47570 * 149.97492 * 1 2 3 27 27 H 1.08000 * 125.43430 * 180.26654 * 4 3 2 28 28 H 1.08001 * 127.02300 * 179.89395 * 5 4 3 29 29 H 0.96999 * 119.99779 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47128 * 296.09534 * 10 9 7 31 31 H 1.09002 * 109.47109 * 56.09445 * 10 9 7 32 32 H 0.97009 * 119.99588 * 114.82319 * 12 11 10 33 33 H 0.97001 * 119.99927 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.62037 * 334.56460 * 21 11 10 35 35 H 1.09000 * 113.61713 * 105.47260 * 21 11 10 36 36 H 1.08999 * 113.53723 * 270.80884 * 22 21 11 37 37 H 1.08998 * 113.66693 * 139.93450 * 22 21 11 38 38 H 1.09003 * 113.61440 * 254.52925 * 23 11 10 39 39 H 1.09001 * 113.62100 * 25.43220 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0047 5 6 3.6849 -0.5991 -0.0007 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5158 0.0000 8 8 0.6889 -2.7892 0.0005 9 7 2.7929 -3.5015 -0.0001 10 6 2.3644 -4.9025 0.0010 11 6 3.5914 -5.8112 -0.0977 12 7 4.2929 -5.6829 -1.3774 13 6 3.6755 -6.0659 -2.5380 14 1 2.7119 -6.5524 -2.5021 15 6 4.2880 -5.8288 -3.7609 16 7 5.4625 -5.2363 -3.8048 17 14 3.4460 -6.3519 -5.3443 18 1 2.1450 -6.9924 -5.0248 19 1 3.2137 -5.1596 -6.1987 20 1 4.3098 -7.3189 -6.0682 21 6 3.3134 -7.2679 0.3091 22 6 4.6865 -7.2511 1.0051 23 6 4.5201 -5.7271 1.1251 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 4.4172 1.4284 0.0098 28 1 4.5928 -1.1840 -0.0006 29 1 3.7381 -3.2834 -0.0001 30 1 1.8266 -5.1172 0.9244 31 1 1.7094 -5.0828 -0.8514 32 1 5.1948 -5.3266 -1.4025 33 1 5.8907 -5.0710 -4.6594 34 1 2.4759 -7.3766 0.9982 35 1 3.2595 -7.9545 -0.5358 36 1 5.5081 -7.5508 0.3545 37 1 4.6965 -7.7662 1.9657 38 1 5.4390 -5.1714 0.9380 39 1 4.0132 -5.4137 2.0378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700128757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:19 Heat of formation + Delta-G solvation = 5.338992 kcal Electronic energy + Delta-G solvation = -21835.420677 eV Core-core repulsion = 18552.607940 eV Total energy + Delta-G solvation = -3282.812737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46415 -39.36097 -38.24692 -33.91162 -33.26076 -32.85178 -31.75447 -30.01752 -27.75569 -26.39600 -25.29230 -23.94245 -22.97090 -21.71667 -20.62766 -19.58194 -18.25386 -17.66539 -17.10095 -16.25829 -15.71858 -15.51114 -15.08097 -14.50837 -14.36336 -14.13590 -13.82525 -13.29492 -13.13275 -12.99663 -12.90080 -12.78677 -12.55791 -12.05936 -11.75870 -11.67018 -11.23012 -11.01545 -10.85421 -10.36292 -10.20863 -10.09344 -9.73599 -9.70405 -9.57612 -9.44540 -8.88794 -8.60782 -8.33073 -7.03682 -5.82625 -3.11959 1.52054 2.16348 2.87271 3.41263 3.48540 3.49592 3.67650 3.80068 4.54207 4.58768 4.96424 5.02434 5.18668 5.26025 5.28034 5.34364 5.44335 5.52448 5.53994 5.61539 5.73805 5.79211 5.91669 6.07466 6.13478 6.19098 6.20972 6.32065 6.37285 6.39337 6.55499 6.72426 6.91339 6.98812 7.06914 7.11307 7.70761 8.06141 8.36205 8.70208 9.47672 10.01149 10.36360 11.39588 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.005599 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.186090 B = 4999.955617 C = 5867.622606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 O -0.180 6.180 4 C -0.046 4.046 5 C -0.182 4.182 6 C -0.236 4.236 7 C 0.584 3.416 8 O -0.556 6.556 9 N -0.695 5.695 10 C 0.121 3.879 11 C 0.173 3.827 12 N -0.699 5.699 13 C -0.233 4.233 14 H 0.071 0.929 15 C -0.009 4.009 16 N -0.931 5.931 17 Si 0.904 3.096 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.206 0.794 28 H 0.158 0.842 29 H 0.400 0.600 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.386 0.614 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 8.347 11.290 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 O -0.077 6.077 4 C -0.112 4.112 5 C -0.201 4.201 6 C -0.240 4.240 7 C 0.372 3.628 8 O -0.438 6.438 9 N -0.343 5.343 10 C -0.005 4.005 11 C 0.080 3.920 12 N -0.339 5.339 13 C -0.364 4.364 14 H 0.089 0.911 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.191 4.191 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.223 0.777 28 H 0.175 0.825 29 H 0.234 0.766 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.079 8.360 11.123 14.499 hybrid contribution 0.734 -0.169 -1.108 1.340 sum -3.345 8.190 10.015 13.363 Atomic orbital electron populations 1.20567 0.83921 1.04960 1.04075 1.22765 0.94041 0.83153 0.98648 1.83732 1.17168 1.35054 1.71725 1.23790 0.83461 0.96388 1.07543 1.22942 0.96943 0.94530 1.05679 1.21294 0.93232 0.94274 1.15243 1.17161 0.85593 0.83695 0.76388 1.90703 1.16708 1.84174 1.52179 1.45530 1.09523 1.06164 1.73117 1.21865 0.98352 0.79648 1.00630 1.20821 0.90998 0.92918 0.87238 1.42055 1.16036 1.76148 0.99692 1.19144 1.02152 1.31113 0.84022 0.91074 1.24719 0.97182 1.01083 0.97535 1.69661 1.15881 1.47755 1.24604 0.86166 0.78666 0.77691 0.83996 1.20469 1.21910 1.21890 1.23339 0.96219 0.99388 1.00145 1.22661 0.98627 0.95772 0.99504 1.23151 0.99908 0.97255 0.97995 0.89650 0.90727 0.87235 0.77720 0.82488 0.76589 0.92861 0.91143 0.77963 0.93585 0.91300 0.90685 0.90048 0.92731 0.91703 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.89 36.00 0.36 -0.59 16 2 C 0.07 0.97 7.37 -34.97 -0.26 0.71 16 3 O -0.18 -2.39 10.52 7.64 0.08 -2.30 16 4 C -0.05 -0.53 12.03 29.30 0.35 -0.18 16 5 C -0.18 -2.46 10.60 -37.45 -0.40 -2.86 16 6 C -0.24 -3.82 6.31 -103.27 -0.65 -4.47 16 7 C 0.58 10.88 7.81 -12.54 -0.10 10.78 16 8 O -0.56 -11.51 14.85 5.26 0.08 -11.43 16 9 N -0.70 -12.49 5.45 -61.40 -0.33 -12.83 16 10 C 0.12 2.27 5.03 -4.04 -0.02 2.25 16 11 C 0.17 3.21 0.80 -131.01 -0.10 3.10 16 12 N -0.70 -16.10 5.18 -46.49 -0.24 -16.34 16 13 C -0.23 -6.17 9.06 -15.06 -0.14 -6.31 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 16 N -0.93 -27.10 13.07 55.49 0.73 -26.37 16 17 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 C -0.15 -2.57 7.29 -25.83 -0.19 -2.76 16 22 C -0.13 -1.98 8.00 -25.82 -0.21 -2.19 16 23 C -0.15 -2.22 7.08 -25.92 -0.18 -2.41 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.11 1.52 6.49 -51.93 -0.34 1.19 16 27 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.16 1.89 7.74 -52.49 -0.41 1.49 16 29 H 0.40 6.75 7.48 -40.82 -0.31 6.44 16 30 H 0.05 0.92 8.06 -51.93 -0.42 0.51 16 31 H 0.07 1.54 7.85 -51.93 -0.41 1.13 16 32 H 0.39 9.47 7.87 -40.82 -0.32 9.15 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.07 1.43 7.86 -51.93 -0.41 1.03 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -31.30 331.05 -6.88 -38.18 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -5.52 Total: 14.04 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.63 Total: -5.27 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.15 Total: -55.54 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.16 Total: -13.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.30 -6.88 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700128757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.520 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds