Wall clock time and date at job start Tue Mar 31 2020 00:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33658 * 125.80404 * 2 1 4 4 C 1.34216 * 110.90844 * 179.78525 * 3 2 1 5 5 C 1.34177 * 109.12581 * 0.39208 * 4 3 2 6 6 C 1.36420 * 125.80255 * 180.02562 * 2 1 3 7 7 C 1.47378 * 127.19150 * 359.94475 * 6 2 1 8 8 O 1.21617 * 119.99733 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00246 * 180.02562 * 7 6 2 10 10 C 1.46502 * 120.00261 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 176.09164 * 10 9 7 12 12 N 1.46499 * 112.84693 * 294.03576 * 11 10 9 13 13 C 1.36931 * 120.00155 * 294.81736 * 12 11 10 14 14 H 1.07996 * 120.00324 * 353.93993 * 13 12 11 15 15 C 1.38811 * 120.00043 * 173.93984 * 13 12 11 16 16 N 1.31624 * 119.99934 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00259 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46699 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46963 * 119.99806 * 17 15 13 20 20 H 1.48492 * 109.47402 * 240.00119 * 17 15 13 21 21 C 1.53776 * 113.61181 * 162.84011 * 11 10 9 22 22 C 1.53960 * 87.01762 * 220.04827 * 21 11 10 23 23 C 1.53773 * 113.61119 * 65.23242 * 11 10 9 24 24 H 1.08998 * 109.47621 * 269.97794 * 1 2 3 25 25 H 1.09002 * 109.47286 * 29.97632 * 1 2 3 26 26 H 1.09006 * 109.47570 * 149.97492 * 1 2 3 27 27 H 1.08000 * 125.43430 * 180.26654 * 4 3 2 28 28 H 1.08001 * 127.02300 * 179.89395 * 5 4 3 29 29 H 0.96999 * 119.99779 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47128 * 296.09534 * 10 9 7 31 31 H 1.09002 * 109.47109 * 56.09445 * 10 9 7 32 32 H 0.97009 * 119.99588 * 114.82319 * 12 11 10 33 33 H 0.97001 * 119.99927 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.62037 * 334.56460 * 21 11 10 35 35 H 1.09000 * 113.61713 * 105.47260 * 21 11 10 36 36 H 1.08999 * 113.53723 * 270.80884 * 22 21 11 37 37 H 1.08998 * 113.66693 * 139.93450 * 22 21 11 38 38 H 1.09003 * 113.61440 * 254.52925 * 23 11 10 39 39 H 1.09001 * 113.62100 * 25.43220 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0047 5 6 3.6849 -0.5991 -0.0007 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5158 0.0000 8 8 0.6889 -2.7892 0.0005 9 7 2.7929 -3.5015 -0.0001 10 6 2.3644 -4.9025 0.0010 11 6 3.5914 -5.8112 -0.0977 12 7 4.2929 -5.6829 -1.3774 13 6 3.6755 -6.0659 -2.5380 14 1 2.7119 -6.5524 -2.5021 15 6 4.2880 -5.8288 -3.7609 16 7 5.4625 -5.2363 -3.8048 17 14 3.4460 -6.3519 -5.3443 18 1 2.1450 -6.9924 -5.0248 19 1 3.2137 -5.1596 -6.1987 20 1 4.3098 -7.3189 -6.0682 21 6 3.3134 -7.2679 0.3091 22 6 4.6865 -7.2511 1.0051 23 6 4.5201 -5.7271 1.1251 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 4.4172 1.4284 0.0098 28 1 4.5928 -1.1840 -0.0006 29 1 3.7381 -3.2834 -0.0001 30 1 1.8266 -5.1172 0.9244 31 1 1.7094 -5.0828 -0.8514 32 1 5.1948 -5.3266 -1.4025 33 1 5.8907 -5.0710 -4.6594 34 1 2.4759 -7.3766 0.9982 35 1 3.2595 -7.9545 -0.5358 36 1 5.5081 -7.5508 0.3545 37 1 4.6965 -7.7662 1.9657 38 1 5.4390 -5.1714 0.9380 39 1 4.0132 -5.4137 2.0378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700128757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:17 Heat of formation + Delta-G solvation = -15.762808 kcal Electronic energy + Delta-G solvation = -21836.335719 eV Core-core repulsion = 18552.607940 eV Total energy + Delta-G solvation = -3283.727779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50938 -40.81914 -39.69241 -35.36988 -35.20842 -33.96570 -32.76411 -31.91000 -29.16703 -27.54200 -26.72803 -25.76447 -24.28376 -23.03064 -21.81522 -20.86501 -19.70363 -19.12215 -18.83222 -17.32133 -17.07544 -16.89955 -16.57163 -16.09995 -15.83244 -15.56175 -15.24569 -15.08175 -14.45200 -14.17845 -14.05300 -13.84519 -13.74882 -13.64726 -13.09120 -12.98625 -12.94495 -12.67231 -12.54819 -12.15448 -11.95083 -11.60849 -11.48935 -11.10692 -10.89804 -10.82778 -10.74938 -9.98238 -9.49432 -8.98864 -7.95309 -5.21524 0.35726 1.14282 1.42010 1.44577 1.52158 1.86094 2.31605 2.44201 2.53635 3.36980 3.63802 3.74170 3.80289 3.84436 3.92030 3.98535 4.09773 4.22657 4.36986 4.60825 4.62716 4.68017 4.76385 4.82735 4.87626 4.91050 4.92943 5.00665 5.12808 5.22429 5.31186 5.37253 5.42350 5.51946 5.63553 5.70914 6.04460 6.29419 6.64270 7.27211 7.35525 8.09384 8.33115 9.27422 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.005599 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.186090 B = 4999.955617 C = 5867.622606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 O -0.179 6.179 4 C -0.026 4.026 5 C -0.203 4.203 6 C -0.272 4.272 7 C 0.577 3.423 8 O -0.586 6.586 9 N -0.693 5.693 10 C 0.130 3.870 11 C 0.157 3.843 12 N -0.704 5.704 13 C -0.220 4.220 14 H 0.066 0.934 15 C -0.067 4.067 16 N -0.961 5.961 17 Si 0.955 3.045 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.292 1.292 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.128 4.128 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.252 0.748 28 H 0.167 0.833 29 H 0.405 0.595 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.377 0.623 33 H 0.249 0.751 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 9.346 12.956 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 O -0.075 6.075 4 C -0.091 4.091 5 C -0.222 4.222 6 C -0.276 4.276 7 C 0.367 3.633 8 O -0.469 6.469 9 N -0.341 5.341 10 C 0.004 3.996 11 C 0.066 3.934 12 N -0.343 5.343 13 C -0.352 4.352 14 H 0.083 0.917 15 C -0.260 4.260 16 N -0.612 5.612 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.227 1.227 20 H -0.219 1.219 21 C -0.189 4.189 22 C -0.157 4.157 23 C -0.166 4.166 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.268 0.732 28 H 0.184 0.816 29 H 0.240 0.760 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.210 0.790 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.985 9.344 12.826 16.362 hybrid contribution 0.654 -0.451 -1.547 1.739 sum -3.331 8.893 11.279 14.745 Atomic orbital electron populations 1.20602 0.82664 1.05032 1.05103 1.23120 0.95016 0.83069 0.97516 1.83771 1.17892 1.34435 1.71358 1.24640 0.83579 0.96448 1.04457 1.23127 0.96163 0.95664 1.07295 1.21318 0.95243 0.93285 1.17790 1.17593 0.85243 0.84865 0.75639 1.90674 1.17814 1.84861 1.53597 1.45515 1.09784 1.05831 1.73009 1.21722 0.97851 0.80281 0.99792 1.21136 0.91621 0.93959 0.86710 1.42091 1.15776 1.75870 1.00600 1.19330 1.01432 1.29138 0.85295 0.91654 1.25319 0.98096 1.02554 1.00014 1.69771 1.17089 1.49790 1.24566 0.85337 0.78055 0.76934 0.81095 1.19790 1.22693 1.21867 1.23363 0.98462 0.97120 0.99983 1.22584 0.96590 0.96123 1.00373 1.23109 0.99185 0.97274 0.96985 0.88074 0.88123 0.89575 0.73209 0.81590 0.75979 0.91019 0.95026 0.78982 0.94219 0.88683 0.93365 0.92023 0.89492 0.91507 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.89 71.23 0.70 -1.09 16 2 C 0.07 1.84 7.37 25.26 0.19 2.03 16 3 O -0.18 -4.29 10.52 4.41 0.05 -4.25 16 4 C -0.03 -0.53 12.03 66.89 0.80 0.27 16 5 C -0.20 -5.22 10.60 23.65 0.25 -4.97 16 6 C -0.27 -8.69 6.31 -18.99 -0.12 -8.81 16 7 C 0.58 21.75 7.81 86.65 0.68 22.43 16 8 O -0.59 -24.79 14.85 -4.08 -0.06 -24.85 16 9 N -0.69 -24.94 5.45 -466.41 -2.54 -27.48 16 10 C 0.13 4.85 5.03 86.38 0.43 5.29 16 11 C 0.16 5.71 0.80 4.13 0.00 5.71 16 12 N -0.70 -32.78 5.18 -300.99 -1.56 -34.33 16 13 C -0.22 -11.82 9.06 84.03 0.76 -11.06 16 14 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 15 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 16 N -0.96 -57.04 13.07 21.65 0.28 -56.75 16 17 Si 0.95 46.81 29.55 68.60 2.03 48.84 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 21 C -0.15 -4.89 7.29 31.18 0.23 -4.67 16 22 C -0.12 -3.41 8.00 31.18 0.25 -3.16 16 23 C -0.13 -3.60 7.08 31.12 0.22 -3.38 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 2.43 6.49 -2.38 -0.02 2.42 16 27 H 0.25 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.17 3.80 7.74 -2.91 -0.02 3.78 16 29 H 0.41 13.59 7.48 -92.71 -0.69 12.89 16 30 H 0.07 2.40 8.06 -2.39 -0.02 2.39 16 31 H 0.03 1.42 7.85 -2.39 -0.02 1.40 16 32 H 0.38 18.77 7.87 -92.70 -0.73 18.04 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.09 2.62 8.04 -2.39 -0.02 2.60 16 35 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 39 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -69.23 331.05 2.72 -66.51 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.35 Total: 37.06 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.87 Total: -4.75 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -3.82 Total: -118.57 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.01 Total: -29.10 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -69.23 2.72 -66.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700128757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.752 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds