Wall clock time and date at job start Tue Mar 31 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33662 * 125.79712 * 2 1 4 4 C 1.34214 * 110.90426 * 180.02562 * 3 2 1 5 5 C 1.34172 * 109.12892 * 359.74464 * 4 3 2 6 6 C 1.36412 * 125.80586 * 179.97438 * 2 1 3 7 7 C 1.47374 * 127.19100 * 359.96888 * 6 2 1 8 8 O 1.21614 * 120.00189 * 359.97438 * 7 6 2 9 9 N 1.34775 * 119.99860 * 179.97438 * 7 6 2 10 10 C 1.46510 * 119.99913 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46971 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47475 * 294.99786 * 11 10 9 13 13 N 1.46495 * 109.47430 * 55.00029 * 11 10 9 14 14 C 1.36938 * 120.00339 * 205.00119 * 13 11 10 15 15 H 1.08002 * 119.99958 * 359.97438 * 14 13 11 16 16 C 1.38808 * 119.99924 * 180.02562 * 14 13 11 17 17 N 1.31621 * 119.99770 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47091 * 90.00275 * 18 16 14 20 20 H 1.48503 * 109.47129 * 210.00332 * 18 16 14 21 21 H 1.48493 * 109.47357 * 330.00257 * 18 16 14 22 22 C 1.53003 * 109.46999 * 175.00231 * 11 10 9 23 23 C 1.53001 * 117.51964 * 111.28362 * 22 11 10 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 11 25 25 H 1.08997 * 109.46947 * 269.99796 * 1 2 3 26 26 H 1.08996 * 109.47511 * 30.00197 * 1 2 3 27 27 H 1.08998 * 109.46690 * 150.00329 * 1 2 3 28 28 H 1.08007 * 125.43164 * 179.97438 * 4 3 2 29 29 H 1.08001 * 127.02520 * 180.26499 * 5 4 3 30 30 H 0.96992 * 120.00193 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.46981 * 59.99955 * 10 9 7 32 32 H 1.08998 * 109.46837 * 299.99947 * 10 9 7 33 33 H 0.97002 * 119.99615 * 24.99601 * 13 11 10 34 34 H 0.97007 * 120.00095 * 179.97438 * 17 16 14 35 35 H 1.09002 * 115.54973 * 325.58146 * 22 11 10 36 36 H 1.09001 * 117.49733 * 214.97413 * 23 22 11 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 11 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7392 -0.0006 5 6 3.6850 -0.5989 0.0047 6 6 2.3051 -1.1063 0.0005 7 6 1.8741 -2.5156 0.0018 8 8 0.6891 -2.7892 0.0030 9 7 2.7933 -3.5013 0.0016 10 6 2.3648 -4.9024 0.0034 11 6 3.5951 -5.8119 0.0022 12 1 4.1440 -5.6794 -0.9303 13 7 4.4606 -5.4642 1.1318 14 6 5.8009 -5.7397 1.0777 15 1 6.2199 -6.2136 0.2024 16 6 6.6208 -5.4107 2.1484 17 7 7.9090 -5.6759 2.0966 18 14 5.8960 -4.5917 3.6628 19 1 5.4679 -5.6327 4.6314 20 1 6.9207 -3.7208 4.2927 21 1 4.7234 -3.7706 3.2681 22 6 3.1512 -7.2705 0.1297 23 6 3.3492 -8.1786 -1.0856 24 6 4.2429 -8.3424 0.1453 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3632 -0.8900 -0.5138 28 1 4.4172 1.4287 -0.0011 29 1 4.5929 -1.1837 0.0097 30 1 3.7383 -3.2832 0.0003 31 1 1.7662 -5.1004 -0.8857 32 1 1.7683 -5.0987 0.8943 33 1 4.0842 -5.0389 1.9182 34 1 8.4821 -5.4457 2.8447 35 1 2.2693 -7.4412 0.7472 36 1 2.5975 -8.9467 -1.2678 37 1 3.7954 -7.7368 -1.9765 38 1 5.2773 -8.0084 0.0644 39 1 4.0792 -9.2183 0.7732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713861449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:16 Heat of formation + Delta-G solvation = 12.342877 kcal Electronic energy + Delta-G solvation = -21572.769540 eV Core-core repulsion = 18290.260515 eV Total energy + Delta-G solvation = -3282.509025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.56372 -39.24268 -37.61183 -34.77351 -33.50458 -32.98470 -31.90673 -31.15657 -28.64895 -26.84364 -24.15026 -22.88881 -22.06529 -21.70824 -20.71560 -20.10064 -19.45110 -18.05314 -17.38237 -16.36314 -15.76670 -15.63957 -15.34541 -14.79122 -14.50078 -14.28279 -13.78328 -13.63470 -13.25575 -13.06250 -12.96180 -12.83687 -12.72237 -12.44023 -11.78586 -11.51691 -11.39342 -10.96495 -10.90849 -10.73343 -10.27568 -9.85164 -9.80943 -9.73850 -9.53482 -9.40317 -9.02886 -8.81308 -8.52250 -7.38234 -5.84738 -3.20881 1.38983 2.07175 2.77633 3.32083 3.36892 3.41363 3.50728 3.55350 4.39722 4.49575 4.52252 4.86619 4.91936 5.10738 5.21326 5.32571 5.40408 5.42654 5.54611 5.55123 5.63456 5.66475 5.75126 5.80335 5.93324 5.98111 6.09229 6.12578 6.19988 6.29631 6.48361 6.55204 6.72419 6.79670 6.98373 6.99502 7.85240 7.89780 8.33223 8.47648 9.11009 9.83772 10.03277 11.32888 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.005692 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.407682 B = 4918.410653 C = 6251.104910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 O -0.179 6.179 4 C -0.044 4.044 5 C -0.183 4.183 6 C -0.242 4.242 7 C 0.586 3.414 8 O -0.555 6.555 9 N -0.708 5.708 10 C 0.117 3.883 11 C 0.198 3.802 12 H 0.064 0.936 13 N -0.742 5.742 14 C -0.242 4.242 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.879 3.121 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.164 4.164 23 C -0.193 4.193 24 C -0.154 4.154 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.208 0.792 29 H 0.161 0.839 30 H 0.410 0.590 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 8.813 -5.726 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 O -0.076 6.076 4 C -0.110 4.110 5 C -0.202 4.202 6 C -0.246 4.246 7 C 0.374 3.626 8 O -0.436 6.436 9 N -0.359 5.359 10 C -0.007 4.007 11 C 0.088 3.912 12 H 0.082 0.918 13 N -0.385 5.385 14 C -0.371 4.371 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.710 3.290 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.203 1.203 22 C -0.186 4.186 23 C -0.231 4.231 24 C -0.191 4.191 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.224 0.776 29 H 0.179 0.821 30 H 0.247 0.753 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.093 8.829 -5.788 16.053 hybrid contribution 0.454 0.374 1.366 1.487 sum -11.640 9.204 -4.421 15.484 Atomic orbital electron populations 1.20572 0.83877 1.04849 1.04256 1.22775 0.94048 0.83177 0.98339 1.83744 1.17230 1.34975 1.71618 1.23839 0.83374 0.96450 1.07292 1.23031 0.97025 0.94639 1.05487 1.21233 0.93376 0.94063 1.15918 1.17188 0.85464 0.83802 0.76152 1.90710 1.16664 1.84237 1.51999 1.45805 1.10462 1.05946 1.73722 1.21658 0.97435 0.79735 1.01894 1.20023 0.89274 0.89215 0.92642 0.91843 1.42829 1.05804 1.72943 1.16902 1.19005 0.81713 1.33676 1.02714 0.88995 1.24628 0.95254 1.01044 0.97754 1.69693 1.03275 1.52748 1.32088 0.86639 0.78152 0.79624 0.84615 1.21172 1.21858 1.20272 1.22946 1.00572 0.94336 1.00713 1.22942 1.03916 1.03229 0.92994 1.22841 0.98024 0.99318 0.98950 0.89541 0.90657 0.87308 0.77554 0.82133 0.75348 0.91129 0.91764 0.80458 0.93029 0.89103 0.90025 0.89408 0.87114 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.89 36.01 0.36 -0.49 16 2 C 0.07 0.93 7.37 -34.97 -0.26 0.67 16 3 O -0.18 -2.24 10.52 7.63 0.08 -2.16 16 4 C -0.04 -0.49 12.03 29.30 0.35 -0.14 16 5 C -0.18 -2.42 10.60 -37.45 -0.40 -2.82 16 6 C -0.24 -3.65 6.31 -103.28 -0.65 -4.30 16 7 C 0.59 9.90 7.81 -12.54 -0.10 9.80 16 8 O -0.56 -10.25 14.85 5.27 0.08 -10.18 16 9 N -0.71 -11.68 5.38 -61.40 -0.33 -12.01 16 10 C 0.12 1.90 5.22 -4.04 -0.02 1.88 16 11 C 0.20 3.52 2.70 -67.93 -0.18 3.34 16 12 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 13 N -0.74 -15.91 4.34 -53.43 -0.23 -16.15 16 14 C -0.24 -6.17 9.11 -15.06 -0.14 -6.31 16 15 H 0.09 2.53 7.14 -52.49 -0.37 2.15 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 18 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 22 C -0.16 -2.74 5.36 -90.61 -0.49 -3.22 16 23 C -0.19 -2.87 10.18 -26.73 -0.27 -3.14 16 24 C -0.15 -2.71 9.78 -26.73 -0.26 -2.97 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.11 1.30 6.49 -51.93 -0.34 0.96 16 28 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.16 2.01 7.74 -52.49 -0.41 1.61 16 30 H 0.41 6.79 7.31 -40.82 -0.30 6.49 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.36 7.98 5.66 -40.82 -0.23 7.74 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.11 2.28 6.23 -51.93 -0.32 1.95 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -30.87 329.17 -6.88 -37.75 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -5.34 Total: 15.69 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.15 Total: -7.55 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.21 Total: -55.14 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.16 Total: -12.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.87 -6.88 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713861449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.092 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds