Wall clock time and date at job start Tue Mar 31 2020 01:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35132 * 125.61381 * 2 1 4 4 C 1.40362 * 107.11408 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.64710 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.70969 * 359.97438 * 4 3 2 7 7 C 1.46659 * 125.98797 * 179.97438 * 6 4 3 8 8 O 1.21696 * 119.99910 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99635 * 179.72796 * 7 6 4 10 10 C 1.46501 * 119.99548 * 180.27250 * 9 7 6 11 11 C 1.50699 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.30998 * 120.00453 * 127.16285 * 11 10 9 13 13 C 1.50703 * 119.99626 * 7.55058 * 12 11 10 14 14 N 1.46502 * 109.46732 * 127.01092 * 13 12 11 15 15 C 1.36938 * 119.99934 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31612 * 120.00362 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47488 * 89.99528 * 19 17 15 21 21 H 1.48506 * 109.47021 * 209.99433 * 19 17 15 22 22 H 1.48494 * 109.47290 * 329.99465 * 19 17 15 23 23 O 1.33933 * 125.61723 * 180.30378 * 2 1 3 24 24 H 1.08995 * 109.46716 * 90.00561 * 1 2 3 25 25 H 1.08996 * 109.46739 * 209.99931 * 1 2 3 26 26 H 1.08994 * 109.47419 * 329.99928 * 1 2 3 27 27 H 1.08001 * 126.44595 * 0.05212 * 3 2 1 28 28 H 1.09000 * 109.47365 * 269.97862 * 5 4 3 29 29 H 1.09004 * 109.46996 * 29.97544 * 5 4 3 30 30 H 1.09002 * 109.47530 * 149.97108 * 5 4 3 31 31 H 0.96993 * 120.00360 * 0.27931 * 9 7 6 32 32 H 1.09000 * 109.47700 * 299.99911 * 10 9 7 33 33 H 1.09005 * 109.47161 * 60.00767 * 10 9 7 34 34 H 1.08002 * 119.99872 * 307.15597 * 11 10 9 35 35 H 1.07996 * 120.00366 * 187.56491 * 12 11 10 36 36 H 1.09001 * 109.47595 * 247.01026 * 13 12 11 37 37 H 1.08998 * 109.47027 * 7.01735 * 13 12 11 38 38 H 0.97001 * 120.00596 * 0.02562 * 14 13 12 39 39 H 0.97006 * 120.00538 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8617 1.5144 -0.0003 6 6 3.5823 -0.7116 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8681 -1.1497 -0.0020 9 7 4.5590 -2.9454 0.0046 10 6 5.7170 -3.8428 0.0097 11 6 5.2436 -5.2735 0.0151 12 6 5.6895 -6.1145 -0.8849 13 6 6.7992 -5.7018 -1.8174 14 7 7.8775 -6.6920 -1.7614 15 6 8.9993 -6.5267 -2.5292 16 1 9.0889 -5.6667 -3.1762 17 6 10.0207 -7.4652 -2.4766 18 7 9.9113 -8.5135 -1.6884 19 14 11.5507 -7.2401 -3.5244 20 1 12.5619 -6.4628 -2.7636 21 1 12.1103 -8.5701 -3.8755 22 1 11.1964 -6.5085 -4.7671 23 8 2.2870 -1.0888 -0.0058 24 1 -0.3632 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9612 2.1261 0.0008 28 1 5.1599 1.7225 -1.0279 29 1 4.6512 2.4522 0.5139 30 1 5.6685 0.9916 0.5135 31 1 3.6612 -3.3122 0.0054 32 1 6.3198 -3.6634 -0.8806 33 1 6.3181 -3.6553 0.8994 34 1 4.5368 -5.6056 0.7612 35 1 5.2617 -7.1033 -0.9589 36 1 6.4145 -5.6407 -2.8354 37 1 7.1842 -4.7279 -1.5153 38 1 7.7969 -7.4646 -1.1806 39 1 10.6250 -9.1696 -1.6519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715799577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:37 Heat of formation + Delta-G solvation = 5.375362 kcal Electronic energy + Delta-G solvation = -20386.906987 eV Core-core repulsion = 17104.095828 eV Total energy + Delta-G solvation = -3282.811159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.96683 -39.49774 -36.62847 -34.80067 -34.12893 -32.95922 -32.60480 -30.46540 -28.20962 -28.05314 -26.06875 -24.74828 -22.47976 -21.89008 -21.48405 -19.96730 -18.94160 -17.86292 -16.84488 -16.78477 -16.28509 -15.59199 -15.31296 -14.69007 -14.37781 -14.15035 -13.82560 -13.54774 -13.43442 -13.30491 -13.19383 -13.15461 -12.89032 -12.63525 -12.61084 -12.42023 -11.86263 -11.74629 -10.95143 -10.79826 -10.43857 -10.23185 -10.03241 -9.88849 -9.77378 -9.26297 -9.04659 -8.71592 -8.53994 -6.91495 -5.76123 -3.05354 0.84980 2.05483 2.19754 2.45625 3.08513 3.32536 3.45882 3.50880 3.52571 4.26669 4.54164 4.62063 4.63966 4.91297 4.99574 5.02098 5.12731 5.26120 5.28834 5.36170 5.56704 5.57042 5.58296 5.67468 5.84344 5.86378 5.94464 5.96804 6.18115 6.24542 6.31250 6.53320 6.57176 6.65283 6.87299 7.13426 7.42759 7.71263 8.03998 8.42308 9.53728 10.09454 10.44893 11.46689 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002810 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.789318 B = 9960.363237 C =10590.057743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 C -0.224 4.224 4 C -0.085 4.085 5 C -0.096 4.096 6 C -0.085 4.085 7 C 0.599 3.401 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.140 3.860 11 C -0.201 4.201 12 C -0.107 4.107 13 C 0.161 3.839 14 N -0.728 5.728 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 O -0.163 6.163 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.403 0.597 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.394 18.014 5.518 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 C -0.243 4.243 4 C -0.087 4.087 5 C -0.152 4.152 6 C -0.136 4.136 7 C 0.386 3.614 8 O -0.394 6.394 9 N -0.363 5.363 10 C 0.019 3.981 11 C -0.220 4.220 12 C -0.126 4.126 13 C 0.034 3.966 14 N -0.372 5.372 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 O -0.059 6.059 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.172 0.828 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.218 0.782 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.514 18.068 5.388 27.862 hybrid contribution 0.299 -0.346 -0.302 0.548 sum -20.215 17.721 5.086 27.360 Atomic orbital electron populations 1.20406 0.84576 1.04453 1.03978 1.22753 0.94230 0.84138 1.02272 1.21468 0.91889 0.99760 1.11145 1.20630 0.96380 0.92233 0.99506 1.20442 0.93898 0.97849 1.03032 1.21891 0.81803 0.94206 1.15740 1.16516 0.86006 0.81550 0.77376 1.90876 1.21973 1.75852 1.50706 1.45947 1.10962 1.05197 1.74177 1.20645 0.87158 0.86385 1.03959 1.22570 1.04677 0.94497 1.00250 1.23305 0.95525 0.99242 0.94560 1.20019 0.87357 0.93708 0.95490 1.42271 1.16809 1.25842 1.52273 1.19251 0.94559 1.05918 1.17460 0.91041 1.24758 0.98826 0.97206 1.00170 1.69664 1.33890 1.12942 1.41689 0.86157 0.83241 0.76776 0.79835 1.21607 1.21737 1.20695 1.83992 1.15940 1.34758 1.71230 0.89566 0.90136 0.88996 0.82789 0.90693 0.91551 0.89333 0.76243 0.88951 0.90658 0.86970 0.86796 0.95368 0.94633 0.78151 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.41 36.01 0.37 0.03 16 2 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 3 C -0.22 -2.06 10.73 -39.89 -0.43 -2.49 16 4 C -0.08 -0.99 6.20 -104.44 -0.65 -1.64 16 5 C -0.10 -1.01 9.81 36.01 0.35 -0.66 16 6 C -0.08 -1.09 7.13 -36.80 -0.26 -1.35 16 7 C 0.60 8.74 7.79 -12.86 -0.10 8.64 16 8 O -0.52 -8.99 14.74 5.19 0.08 -8.91 16 9 N -0.71 -9.22 5.54 -62.80 -0.35 -9.56 16 10 C 0.14 2.05 5.76 -5.19 -0.03 2.02 16 11 C -0.20 -2.79 9.63 -36.03 -0.35 -3.14 16 12 C -0.11 -1.75 9.63 -36.02 -0.35 -2.10 16 13 C 0.16 3.32 6.35 -5.19 -0.03 3.29 16 14 N -0.73 -18.93 5.59 -61.08 -0.34 -19.27 16 15 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 19 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 O -0.16 -1.82 10.40 4.98 0.05 -1.76 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.10 6.45 -51.93 -0.33 0.77 16 31 H 0.40 4.28 8.22 -40.82 -0.34 3.94 16 32 H 0.09 1.54 5.30 -51.93 -0.28 1.27 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.75 5.29 -51.93 -0.27 0.47 16 38 H 0.38 10.45 7.66 -40.82 -0.31 10.14 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -33.63 336.66 -7.06 -40.70 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.31 Total: 8.93 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.97 Total: -5.06 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.03 Total: -56.77 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.13 Total: -10.67 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.63 -7.06 -40.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715799577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.075 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds