Wall clock time and date at job start Tue Mar 31 2020 01:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35132 * 125.61381 * 2 1 4 4 C 1.40362 * 107.11408 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.64710 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.70969 * 359.97438 * 4 3 2 7 7 C 1.46659 * 125.98797 * 179.97438 * 6 4 3 8 8 O 1.21696 * 119.99910 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99635 * 179.72796 * 7 6 4 10 10 C 1.46501 * 119.99548 * 180.27250 * 9 7 6 11 11 C 1.50699 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.30998 * 120.00453 * 127.16285 * 11 10 9 13 13 C 1.50703 * 119.99626 * 7.55058 * 12 11 10 14 14 N 1.46502 * 109.46732 * 127.01092 * 13 12 11 15 15 C 1.36938 * 119.99934 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31612 * 120.00362 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47488 * 89.99528 * 19 17 15 21 21 H 1.48506 * 109.47021 * 209.99433 * 19 17 15 22 22 H 1.48494 * 109.47290 * 329.99465 * 19 17 15 23 23 O 1.33933 * 125.61723 * 180.30378 * 2 1 3 24 24 H 1.08995 * 109.46716 * 90.00561 * 1 2 3 25 25 H 1.08996 * 109.46739 * 209.99931 * 1 2 3 26 26 H 1.08994 * 109.47419 * 329.99928 * 1 2 3 27 27 H 1.08001 * 126.44595 * 0.05212 * 3 2 1 28 28 H 1.09000 * 109.47365 * 269.97862 * 5 4 3 29 29 H 1.09004 * 109.46996 * 29.97544 * 5 4 3 30 30 H 1.09002 * 109.47530 * 149.97108 * 5 4 3 31 31 H 0.96993 * 120.00360 * 0.27931 * 9 7 6 32 32 H 1.09000 * 109.47700 * 299.99911 * 10 9 7 33 33 H 1.09005 * 109.47161 * 60.00767 * 10 9 7 34 34 H 1.08002 * 119.99872 * 307.15597 * 11 10 9 35 35 H 1.07996 * 120.00366 * 187.56491 * 12 11 10 36 36 H 1.09001 * 109.47595 * 247.01026 * 13 12 11 37 37 H 1.08998 * 109.47027 * 7.01735 * 13 12 11 38 38 H 0.97001 * 120.00596 * 0.02562 * 14 13 12 39 39 H 0.97006 * 120.00538 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8617 1.5144 -0.0003 6 6 3.5823 -0.7116 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8681 -1.1497 -0.0020 9 7 4.5590 -2.9454 0.0046 10 6 5.7170 -3.8428 0.0097 11 6 5.2436 -5.2735 0.0151 12 6 5.6895 -6.1145 -0.8849 13 6 6.7992 -5.7018 -1.8174 14 7 7.8775 -6.6920 -1.7614 15 6 8.9993 -6.5267 -2.5292 16 1 9.0889 -5.6667 -3.1762 17 6 10.0207 -7.4652 -2.4766 18 7 9.9113 -8.5135 -1.6884 19 14 11.5507 -7.2401 -3.5244 20 1 12.5619 -6.4628 -2.7636 21 1 12.1103 -8.5701 -3.8755 22 1 11.1964 -6.5085 -4.7671 23 8 2.2870 -1.0888 -0.0058 24 1 -0.3632 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9612 2.1261 0.0008 28 1 5.1599 1.7225 -1.0279 29 1 4.6512 2.4522 0.5139 30 1 5.6685 0.9916 0.5135 31 1 3.6612 -3.3122 0.0054 32 1 6.3198 -3.6634 -0.8806 33 1 6.3181 -3.6553 0.8994 34 1 4.5368 -5.6056 0.7612 35 1 5.2617 -7.1033 -0.9589 36 1 6.4145 -5.6407 -2.8354 37 1 7.1842 -4.7279 -1.5153 38 1 7.7969 -7.4646 -1.1806 39 1 10.6250 -9.1696 -1.6519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715799577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:37 Heat of formation + Delta-G solvation = -17.897270 kcal Electronic energy + Delta-G solvation = -20387.916164 eV Core-core repulsion = 17104.095828 eV Total energy + Delta-G solvation = -3283.820336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.76074 -40.63905 -38.04626 -36.26501 -35.16943 -34.41842 -33.35348 -32.35247 -29.15790 -28.88670 -27.52037 -26.17135 -24.41643 -22.78454 -22.32673 -20.97097 -20.12279 -19.33555 -18.48778 -17.70185 -17.52390 -16.77916 -16.39899 -16.25492 -15.67709 -15.40957 -15.09726 -15.03244 -14.52548 -14.23276 -14.15811 -14.01579 -13.90437 -13.67676 -13.61991 -13.29148 -13.25492 -12.93362 -12.75230 -12.58858 -12.18546 -11.92352 -11.70033 -11.35936 -11.03394 -10.67655 -10.47128 -10.04208 -9.42883 -9.01134 -7.98803 -5.28511 -0.04207 0.98017 1.30863 1.45884 1.48141 1.56556 1.61776 2.03211 2.28855 2.55239 3.34603 3.58170 3.73137 3.76479 3.86459 4.08621 4.15469 4.30704 4.44323 4.49180 4.53638 4.57494 4.70841 4.73263 4.74020 4.82229 4.89001 4.97004 5.01064 5.14585 5.19782 5.28196 5.44552 5.49787 5.54669 5.81236 5.84917 6.23792 6.40627 6.97253 7.29861 8.03037 8.28224 9.24627 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002810 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.789318 B = 9960.363237 C =10590.057743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 C -0.232 4.232 4 C -0.090 4.090 5 C -0.095 4.095 6 C -0.120 4.120 7 C 0.596 3.404 8 O -0.556 6.556 9 N -0.701 5.701 10 C 0.141 3.859 11 C -0.162 4.162 12 C -0.130 4.130 13 C 0.160 3.840 14 N -0.741 5.741 15 C -0.251 4.251 16 H 0.074 0.926 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.976 3.024 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.270 1.270 23 O -0.170 6.170 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.183 0.817 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.416 0.584 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.025 0.975 37 H 0.034 0.966 38 H 0.376 0.624 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.745 19.433 5.705 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 C -0.251 4.251 4 C -0.093 4.093 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.384 3.616 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.019 3.981 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.034 3.966 14 N -0.384 5.384 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.804 3.196 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.195 1.195 23 O -0.067 6.067 24 H 0.120 0.880 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.201 0.799 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.253 0.747 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.208 0.792 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.921 19.505 5.566 30.607 hybrid contribution 0.862 -0.639 -0.324 1.121 sum -22.059 18.867 5.242 29.496 Atomic orbital electron populations 1.20675 0.81225 1.06079 1.05389 1.23701 0.95926 0.83374 0.99292 1.21812 0.90547 1.01400 1.11338 1.21002 0.97872 0.92081 0.98299 1.20441 0.93028 0.98594 1.03090 1.21539 0.82128 0.94266 1.19176 1.16790 0.86237 0.81960 0.76588 1.90846 1.23657 1.76561 1.52631 1.45756 1.11057 1.04661 1.73718 1.20478 0.87703 0.87377 1.02571 1.22762 1.03221 0.93115 0.98999 1.23058 0.95847 1.00612 0.95447 1.20092 0.87466 0.92440 0.96563 1.42471 1.17543 1.26637 1.51741 1.19637 0.95530 1.05730 1.17396 0.90852 1.25604 1.01988 0.97177 1.01848 1.69811 1.34772 1.13814 1.43411 0.85112 0.79345 0.76618 0.78514 1.21325 1.21710 1.19461 1.83978 1.15349 1.35822 1.71551 0.88045 0.89317 0.86560 0.79917 0.90603 0.88956 0.91729 0.74688 0.91353 0.91192 0.83267 0.85545 0.95727 0.94880 0.79189 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 71.24 0.74 0.34 16 2 C 0.03 0.44 7.31 24.97 0.18 0.62 16 3 C -0.23 -3.70 10.73 22.07 0.24 -3.47 16 4 C -0.09 -2.02 6.20 -19.74 -0.12 -2.14 16 5 C -0.10 -2.00 9.81 71.24 0.70 -1.30 16 6 C -0.12 -3.05 7.13 24.07 0.17 -2.88 16 7 C 0.60 17.77 7.79 86.44 0.67 18.45 16 8 O -0.56 -20.30 14.74 -4.33 -0.06 -20.36 16 9 N -0.70 -17.93 5.54 -470.83 -2.61 -20.54 16 10 C 0.14 4.13 5.76 85.63 0.49 4.62 16 11 C -0.16 -4.24 9.63 25.65 0.25 -3.99 16 12 C -0.13 -4.18 9.63 25.65 0.25 -3.94 16 13 C 0.16 6.71 6.35 85.63 0.54 7.25 16 14 N -0.74 -39.32 5.59 -347.17 -1.94 -41.26 16 15 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 16 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 18 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 19 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 23 O -0.17 -3.55 10.40 -5.08 -0.05 -3.61 16 24 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.68 6.45 -2.39 -0.02 1.67 16 31 H 0.42 8.31 8.22 -92.71 -0.76 7.55 16 32 H 0.07 2.36 5.30 -2.39 -0.01 2.35 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.03 1.43 5.29 -2.39 -0.01 1.41 16 38 H 0.38 20.89 7.66 -92.71 -0.71 20.18 16 39 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -74.44 336.66 2.67 -71.78 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.39 Total: 28.83 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.42 Total: -4.13 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -4.27 Total: -121.89 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.12 Total: -23.97 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -74.44 2.67 -71.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715799577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.879 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds