Wall clock time and date at job start Tue Mar 31 2020 01:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40357 * 126.44658 * 2 1 4 4 C 1.36545 * 106.70827 * 180.02562 * 3 2 1 5 5 C 1.46665 * 125.98674 * 179.73780 * 4 3 2 6 6 O 1.21696 * 119.99888 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.46493 * 119.99945 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47398 * 180.02562 * 8 7 5 10 10 C 1.31000 * 120.00503 * 124.99741 * 9 8 7 11 11 C 1.50702 * 119.99982 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.46913 * 124.99854 * 11 10 9 13 13 C 1.36937 * 119.99803 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99744 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99689 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47253 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46675 * 119.99849 * 17 15 13 20 20 H 1.48499 * 109.47210 * 239.99918 * 17 15 13 21 21 O 1.34906 * 108.02749 * 359.97438 * 4 3 2 22 22 C 1.33930 * 109.38535 * 0.02562 * 21 4 3 23 23 C 1.50699 * 125.62122 * 179.97438 * 22 21 4 24 24 H 1.08997 * 109.47118 * 89.96819 * 1 2 3 25 25 H 1.08994 * 109.47411 * 209.97233 * 1 2 3 26 26 H 1.08997 * 109.46545 * 329.97234 * 1 2 3 27 27 H 1.08000 * 126.64835 * 0.07546 * 3 2 1 28 28 H 0.96998 * 119.99898 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.47081 * 299.99909 * 8 7 5 30 30 H 1.09001 * 109.47407 * 59.99638 * 8 7 5 31 31 H 1.08007 * 119.99503 * 304.99543 * 9 8 7 32 32 H 1.08000 * 119.99779 * 0.02562 * 10 9 8 33 33 H 1.09002 * 109.46796 * 245.00250 * 11 10 9 34 34 H 1.08996 * 109.46939 * 5.00118 * 11 10 9 35 35 H 0.96997 * 120.00129 * 0.02562 * 12 11 10 36 36 H 0.96995 * 120.00241 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.47313 * 270.04203 * 23 22 21 38 38 H 1.09003 * 109.46729 * 30.03789 * 23 22 21 39 39 H 1.09002 * 109.47072 * 150.03752 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1291 0.0000 4 6 3.6261 0.6679 -0.0006 5 6 4.8380 1.4939 -0.0062 6 8 4.7473 2.7074 -0.0105 7 7 6.0522 0.9089 -0.0057 8 6 7.2628 1.7339 -0.0107 9 6 8.4781 0.8427 -0.0096 10 6 9.3895 0.9767 -0.9409 11 6 10.6045 0.0851 -0.9400 12 7 10.7164 -0.5891 -2.2358 13 6 11.7511 -1.4550 -2.4700 14 1 12.4843 -1.6412 -1.6992 15 6 11.8574 -2.0934 -3.6980 16 7 10.9641 -1.8661 -4.6375 17 14 13.2693 -3.2741 -4.0177 18 1 14.1301 -3.3548 -2.8103 19 1 12.7271 -4.6210 -4.3294 20 1 14.0725 -2.7855 -5.1671 21 8 3.5858 -0.6806 -0.0004 22 6 2.3097 -1.0872 -0.0002 23 6 1.8454 -2.5208 -0.0005 24 1 -0.3633 0.0006 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3632 0.8897 0.5143 27 1 2.0268 2.1624 0.0011 28 1 6.1245 -0.0584 -0.0011 29 1 7.2723 2.3595 -0.9033 30 1 7.2749 2.3667 0.8767 31 1 8.5976 0.0936 0.7592 32 1 9.2702 1.7261 -1.7094 33 1 11.4964 0.6868 -0.7651 34 1 10.5079 -0.6597 -0.1501 35 1 10.0581 -0.4215 -2.9282 36 1 11.0386 -2.3119 -5.4957 37 1 1.7339 -2.8665 -1.0281 38 1 2.5799 -3.1407 0.5137 39 1 0.8865 -2.5923 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716283937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:46 Heat of formation + Delta-G solvation = -4.179152 kcal Electronic energy + Delta-G solvation = -20058.733736 eV Core-core repulsion = 16775.508261 eV Total energy + Delta-G solvation = -3283.225474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.95853 -39.53463 -36.34147 -34.95522 -34.55844 -32.87206 -32.25674 -30.63188 -29.04664 -27.78765 -26.16308 -24.17303 -22.49893 -21.75621 -21.35151 -20.12030 -19.30572 -18.00544 -17.11544 -16.76925 -16.08710 -15.82559 -15.22323 -14.78989 -14.39940 -14.06513 -13.87660 -13.60373 -13.49536 -13.33003 -13.22989 -13.19348 -12.97565 -12.80417 -12.51684 -12.05329 -11.90350 -11.83672 -11.05498 -10.85243 -10.68078 -10.45104 -10.05867 -9.94617 -9.82669 -9.37024 -9.05240 -8.76981 -8.58666 -6.96482 -5.79453 -3.09171 0.85692 2.03019 2.18982 2.47436 3.05169 3.28776 3.41731 3.47232 3.49638 4.33544 4.49996 4.57651 4.59275 4.85946 4.92589 5.05832 5.11937 5.22997 5.28035 5.34359 5.42155 5.53336 5.54516 5.57514 5.66552 5.73716 5.79113 5.97108 6.11170 6.19628 6.20292 6.45119 6.55007 6.66357 6.87479 7.12071 7.36851 7.67320 7.95391 8.38730 9.50114 10.06309 10.41548 11.43317 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.002824 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.714212 B = 9913.935385 C =10944.378793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.196 4.196 3 C -0.115 4.115 4 C -0.077 4.077 5 C 0.602 3.398 6 O -0.526 6.526 7 N -0.712 5.712 8 C 0.155 3.845 9 C -0.203 4.203 10 C -0.104 4.104 11 C 0.172 3.828 12 N -0.730 5.730 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 O -0.159 6.159 22 C 0.018 3.982 23 C -0.079 4.079 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.409 0.591 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.032 0.968 34 H 0.026 0.974 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.029 2.534 11.858 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.198 4.198 3 C -0.136 4.136 4 C -0.129 4.129 5 C 0.388 3.612 6 O -0.404 6.404 7 N -0.362 5.362 8 C 0.033 3.967 9 C -0.223 4.223 10 C -0.123 4.123 11 C 0.045 3.955 12 N -0.374 5.374 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 O -0.055 6.055 22 C -0.034 4.034 23 C -0.135 4.135 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.244 0.756 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.627 3.128 11.884 24.010 hybrid contribution 0.550 -0.939 -0.528 1.210 sum -20.078 2.188 11.356 23.170 Atomic orbital electron populations 1.20185 0.88601 1.02696 1.02293 1.20207 0.97517 0.91765 1.10262 1.21799 0.90505 1.00440 1.00844 1.21992 0.96190 0.80308 1.14381 1.16545 0.81282 0.86324 0.77052 1.90875 1.86059 1.12237 1.51245 1.45978 1.05147 1.11309 1.73751 1.20402 0.81244 0.92514 1.02589 1.22672 0.95683 1.02258 1.01649 1.23353 0.95907 0.97329 0.95744 1.19831 0.92784 0.92528 0.90344 1.42307 1.31936 1.51858 1.11332 1.19289 1.02875 1.17148 0.97965 0.90998 1.24775 0.98968 1.00852 0.96410 1.69675 1.36364 1.46761 1.05249 0.86089 0.81576 0.80614 0.77737 1.20501 1.21813 1.21785 1.84021 1.28853 1.21773 1.70880 1.22613 0.80608 0.97249 1.02923 1.20423 1.01942 0.87042 1.04095 0.91260 0.91505 0.91342 0.82306 0.75612 0.90786 0.90659 0.86638 0.87178 0.95069 0.95627 0.78128 0.93486 0.89423 0.90026 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.17 36.01 0.37 -0.15 16 2 C -0.20 -1.91 6.14 -104.93 -0.64 -2.56 16 3 C -0.12 -1.34 10.57 -39.40 -0.42 -1.76 16 4 C -0.08 -1.00 7.13 -36.79 -0.26 -1.27 16 5 C 0.60 8.66 7.79 -12.86 -0.10 8.56 16 6 O -0.53 -8.88 16.87 5.19 0.09 -8.80 16 7 N -0.71 -9.28 5.54 -62.81 -0.35 -9.63 16 8 C 0.15 2.02 6.11 -5.20 -0.03 1.98 16 9 C -0.20 -2.81 9.24 -36.03 -0.33 -3.14 16 10 C -0.10 -1.70 9.24 -36.03 -0.33 -2.03 16 11 C 0.17 3.46 6.70 -5.19 -0.03 3.43 16 12 N -0.73 -18.73 5.59 -61.09 -0.34 -19.07 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 17 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 O -0.16 -1.93 10.40 5.02 0.05 -1.88 16 22 C 0.02 0.18 7.31 -35.41 -0.26 -0.08 16 23 C -0.08 -0.47 10.21 36.01 0.37 -0.10 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.32 7.13 -51.93 -0.37 -0.05 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.41 4.87 8.22 -40.82 -0.34 4.54 16 29 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.12 1.51 7.84 -52.48 -0.41 1.10 16 32 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.03 0.51 7.79 -51.93 -0.40 0.11 16 35 H 0.39 10.41 7.66 -40.82 -0.31 10.10 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.35 7.12 -51.93 -0.37 -0.02 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -33.38 342.87 -7.14 -40.51 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.53 Total: 8.56 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.93 Total: -4.58 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.03 Total: -56.37 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.14 Total: -10.68 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.38 -7.14 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716283937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.335 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds