Wall clock time and date at job start Tue Mar 31 2020 01:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 12 12 N 1.46510 * 109.46482 * 304.99988 * 11 9 8 13 13 C 1.36939 * 119.99628 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00228 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99496 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99565 * 180.02562 * 15 13 12 17 17 Si 1.86789 * 120.00243 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47744 * 89.99623 * 17 15 13 19 19 H 1.48510 * 109.47039 * 209.99876 * 17 15 13 20 20 H 1.48497 * 109.47226 * 329.99454 * 17 15 13 21 21 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 22 22 C 1.53007 * 117.49696 * 128.74932 * 21 9 8 23 23 C 1.52998 * 117.50017 * 60.09194 * 21 9 8 24 24 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 25 25 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 26 26 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 27 27 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 28 28 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.47318 * 64.99083 * 11 9 8 31 31 H 1.08988 * 109.47710 * 185.00333 * 11 9 8 32 32 H 0.97003 * 120.00089 * 359.97438 * 12 11 9 33 33 H 0.97000 * 120.00018 * 180.02562 * 16 15 13 34 34 H 1.08992 * 115.54981 * 274.41455 * 21 9 8 35 35 H 1.08999 * 117.49485 * 0.02562 * 22 21 9 36 36 H 1.09001 * 117.49917 * 145.01733 * 22 21 9 37 37 H 1.08993 * 117.49961 * 214.98139 * 23 21 9 38 38 H 1.09002 * 117.49657 * 359.97438 * 23 21 9 39 39 H 1.07999 * 126.64240 * 179.78042 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 1 7.0915 -2.6337 -0.5889 11 6 8.4231 -0.9404 -0.6019 12 7 8.0467 -0.4630 -1.9349 13 6 8.9323 0.2763 -2.6727 14 1 9.9083 0.5070 -2.2721 15 6 8.5759 0.7281 -3.9359 16 7 9.4273 1.4383 -4.6452 17 14 6.8880 0.3284 -4.6290 18 1 5.9305 1.3977 -4.2482 19 1 6.9689 0.2404 -6.1092 20 1 6.4227 -0.9708 -4.0807 21 6 7.6070 -2.1261 1.4403 22 6 7.8495 -3.6089 1.7295 23 6 6.5672 -2.9326 2.2209 24 6 2.3408 -1.1291 -0.0066 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5142 28 1 1.9769 2.1146 0.0004 29 1 6.1245 0.0584 -0.0014 30 1 8.6524 -0.0882 0.0378 31 1 9.3004 -1.5824 -0.6803 32 1 7.1702 -0.6706 -2.2948 33 1 9.1781 1.7544 -5.5278 34 1 8.2021 -1.4012 1.9955 35 1 7.7641 -4.3048 0.8950 36 1 8.6039 -3.8594 2.4753 37 1 6.4784 -2.7384 3.2897 38 1 5.6376 -3.1834 1.7098 39 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716618540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:03 Heat of formation + Delta-G solvation = 16.331219 kcal Electronic energy + Delta-G solvation = -21691.489486 eV Core-core repulsion = 18409.153408 eV Total energy + Delta-G solvation = -3282.336078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.77555 -39.81679 -37.28293 -35.23290 -34.41585 -33.49027 -31.44809 -30.60986 -28.63220 -27.31562 -24.27761 -23.30489 -22.17989 -21.34502 -21.20586 -20.30470 -19.94381 -18.14176 -17.51023 -16.50998 -16.43687 -16.10296 -15.27611 -14.98144 -14.40463 -14.19221 -13.72037 -13.63721 -13.39318 -13.26906 -13.16171 -12.80077 -12.76337 -12.31964 -11.97415 -11.88775 -11.34228 -11.29207 -11.07872 -10.89423 -10.36182 -10.20222 -10.09176 -9.89469 -9.82138 -9.62854 -8.98380 -8.92310 -8.63522 -7.29585 -5.80646 -3.17022 1.02529 2.18886 2.65314 3.20573 3.23544 3.35695 3.40834 3.43672 4.03217 4.56332 4.60373 4.62907 4.70639 4.80235 5.06437 5.14495 5.19171 5.31186 5.38475 5.47037 5.48496 5.57785 5.61558 5.71504 5.76515 5.79708 5.84013 5.87286 6.03990 6.24697 6.26325 6.31579 6.41511 6.53005 6.68526 6.80979 7.60789 7.94166 8.18187 8.37925 9.16150 9.88576 10.07487 11.37463 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.006684 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.065513 B = 4188.053229 C = 6068.982143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.197 4.197 3 C -0.010 4.010 4 O -0.158 6.158 5 C -0.070 4.070 6 C 0.602 3.398 7 O -0.525 6.525 8 N -0.699 5.699 9 C 0.163 3.837 10 H 0.092 0.908 11 C 0.153 3.847 12 N -0.756 5.756 13 C -0.247 4.247 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.932 5.932 17 Si 0.880 3.120 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.165 4.165 22 C -0.168 4.168 23 C -0.186 4.186 24 C -0.123 4.123 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.208 0.792 29 H 0.410 0.590 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -3.822 14.033 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.199 4.199 3 C -0.080 4.080 4 O -0.053 6.053 5 C -0.122 4.122 6 C 0.388 3.612 7 O -0.404 6.404 8 N -0.348 5.348 9 C 0.059 3.941 10 H 0.110 0.890 11 C 0.025 3.975 12 N -0.402 5.402 13 C -0.376 4.376 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.579 5.579 17 Si 0.710 3.290 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.184 4.184 22 C -0.206 4.206 23 C -0.223 4.223 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.225 0.775 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.496 -4.373 13.941 20.582 hybrid contribution -1.253 0.316 -0.653 1.448 sum -15.750 -4.057 13.289 21.002 Atomic orbital electron populations 1.20163 0.88706 1.02693 1.02298 1.20465 0.97643 0.92441 1.09331 1.24210 0.80021 1.00067 1.03693 1.84104 1.29251 1.21706 1.70192 1.22161 0.96281 0.80613 1.13147 1.16547 0.81421 0.86399 0.76791 1.90788 1.86019 1.12191 1.51418 1.45974 1.04913 1.11303 1.72626 1.20976 0.84112 0.95121 0.93880 0.89047 1.20907 0.93700 0.95855 0.86998 1.42714 1.16833 1.65269 1.15381 1.19040 0.97042 1.24441 0.97102 0.89012 1.24639 0.97429 0.99862 0.96805 1.69697 1.34903 1.40883 1.12442 0.86621 0.85538 0.78200 0.78660 1.20996 1.21561 1.20395 1.22629 1.04161 0.94893 0.96739 1.22911 0.99766 0.94479 1.03432 1.23271 0.95435 1.04023 0.99554 1.21800 0.90533 1.00468 1.01566 0.91316 0.91371 0.91520 0.77533 0.75445 0.94691 0.93540 0.80456 0.92997 0.87496 0.88655 0.88980 0.89684 0.86640 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 36.01 0.37 -0.24 16 2 C -0.20 -2.15 6.14 -104.93 -0.64 -2.79 16 3 C -0.01 -0.11 12.00 29.63 0.36 0.25 16 4 O -0.16 -2.19 10.40 5.01 0.05 -2.14 16 5 C -0.07 -1.04 7.13 -36.79 -0.26 -1.30 16 6 C 0.60 9.91 7.11 -12.86 -0.09 9.82 16 7 O -0.52 -9.48 13.88 5.20 0.07 -9.41 16 8 N -0.70 -11.19 4.50 -55.12 -0.25 -11.44 16 9 C 0.16 2.64 2.43 -67.93 -0.17 2.48 16 10 H 0.09 1.63 7.34 -51.93 -0.38 1.25 16 11 C 0.15 2.87 5.80 -4.04 -0.02 2.84 16 12 N -0.76 -17.81 5.24 -59.91 -0.31 -18.12 16 13 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 14 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 15 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 16 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 17 Si 0.88 22.56 27.73 -169.99 -4.71 17.84 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.28 -6.93 6.52 56.52 0.37 -6.57 16 21 C -0.16 -2.24 5.36 -90.61 -0.49 -2.73 16 22 C -0.17 -2.11 10.18 -26.69 -0.27 -2.38 16 23 C -0.19 -2.46 9.73 -26.69 -0.26 -2.72 16 24 C -0.12 -1.61 10.57 -39.39 -0.42 -2.03 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.21 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.41 6.38 8.36 -40.82 -0.34 6.04 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.88 8.14 -51.94 -0.42 0.45 16 32 H 0.36 8.62 5.20 -40.82 -0.21 8.41 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 34 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 35 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.77 5.00 -51.93 -0.26 1.51 16 39 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -32.88 330.79 -6.97 -39.85 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.43 Total: 12.62 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.14 Total: -5.74 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.21 Total: -58.01 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.12 Total: -11.55 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.88 -6.97 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716618540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.177 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds