Wall clock time and date at job start Tue Mar 31 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 12 12 N 1.46510 * 109.46482 * 304.99988 * 11 9 8 13 13 C 1.36939 * 119.99628 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00228 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99496 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99565 * 180.02562 * 15 13 12 17 17 Si 1.86789 * 120.00243 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47744 * 89.99623 * 17 15 13 19 19 H 1.48510 * 109.47039 * 209.99876 * 17 15 13 20 20 H 1.48497 * 109.47226 * 329.99454 * 17 15 13 21 21 C 1.53008 * 109.47014 * 275.27733 * 9 8 6 22 22 C 1.53007 * 117.49696 * 128.74932 * 21 9 8 23 23 C 1.52998 * 117.50017 * 60.09194 * 21 9 8 24 24 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 25 25 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 26 26 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 27 27 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 28 28 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.47318 * 64.99083 * 11 9 8 31 31 H 1.08988 * 109.47710 * 185.00333 * 11 9 8 32 32 H 0.97003 * 120.00089 * 359.97438 * 12 11 9 33 33 H 0.97000 * 120.00018 * 180.02562 * 16 15 13 34 34 H 1.08992 * 115.54981 * 274.41455 * 21 9 8 35 35 H 1.08999 * 117.49485 * 0.02562 * 22 21 9 36 36 H 1.09001 * 117.49917 * 145.01733 * 22 21 9 37 37 H 1.08993 * 117.49961 * 214.98139 * 23 21 9 38 38 H 1.09002 * 117.49657 * 359.97438 * 23 21 9 39 39 H 1.07999 * 126.64240 * 179.78042 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 1 7.0915 -2.6337 -0.5889 11 6 8.4231 -0.9404 -0.6019 12 7 8.0467 -0.4630 -1.9349 13 6 8.9323 0.2763 -2.6727 14 1 9.9083 0.5070 -2.2721 15 6 8.5759 0.7281 -3.9359 16 7 9.4273 1.4383 -4.6452 17 14 6.8880 0.3284 -4.6290 18 1 5.9305 1.3977 -4.2482 19 1 6.9689 0.2404 -6.1092 20 1 6.4227 -0.9708 -4.0807 21 6 7.6070 -2.1261 1.4403 22 6 7.8495 -3.6089 1.7295 23 6 6.5672 -2.9326 2.2209 24 6 2.3408 -1.1291 -0.0066 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5142 28 1 1.9769 2.1146 0.0004 29 1 6.1245 0.0584 -0.0014 30 1 8.6524 -0.0882 0.0378 31 1 9.3004 -1.5824 -0.6803 32 1 7.1702 -0.6706 -2.2948 33 1 9.1781 1.7544 -5.5278 34 1 8.2021 -1.4012 1.9955 35 1 7.7641 -4.3048 0.8950 36 1 8.6039 -3.8594 2.4753 37 1 6.4784 -2.7384 3.2897 38 1 5.6376 -3.1834 1.7098 39 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716618540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:01 Heat of formation + Delta-G solvation = -5.724727 kcal Electronic energy + Delta-G solvation = -21692.445903 eV Core-core repulsion = 18409.153408 eV Total energy + Delta-G solvation = -3283.292495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.72877 -41.06324 -38.51923 -36.79780 -35.42186 -34.92264 -33.39834 -31.69570 -30.10440 -28.11660 -25.94715 -24.57407 -23.20868 -23.01701 -22.18555 -21.49901 -21.07850 -19.85681 -18.85632 -17.68209 -17.48558 -17.16940 -16.72763 -16.45346 -16.07138 -15.54761 -15.06984 -14.80765 -14.71260 -14.46530 -14.13055 -13.98030 -13.91235 -13.59641 -13.51951 -12.95388 -12.80512 -12.63969 -12.55025 -12.33230 -12.16756 -11.87637 -11.56101 -11.21228 -11.07354 -11.01406 -10.74592 -10.18808 -9.57883 -9.36490 -8.07105 -5.40358 -0.01633 1.31125 1.31645 1.33004 1.39476 1.64253 2.03779 2.12089 2.41642 2.97097 3.24791 3.37416 3.64254 3.79835 3.80301 3.99405 4.02274 4.11122 4.19311 4.33821 4.36751 4.55980 4.62979 4.80026 4.83764 4.86681 4.89599 5.01212 5.02061 5.04067 5.06856 5.25088 5.27741 5.42858 5.49687 5.72228 5.82510 6.16612 6.38421 6.94850 7.01915 7.76984 7.94899 9.14220 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.006684 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.065513 B = 4188.053229 C = 6068.982143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.001 4.001 4 O -0.173 6.173 5 C -0.106 4.106 6 C 0.600 3.400 7 O -0.550 6.550 8 N -0.700 5.700 9 C 0.174 3.826 10 H 0.073 0.927 11 C 0.153 3.847 12 N -0.758 5.758 13 C -0.232 4.232 14 H 0.067 0.933 15 C -0.053 4.053 16 N -0.978 5.978 17 Si 0.943 3.057 18 H -0.275 1.275 19 H -0.293 1.293 20 H -0.270 1.270 21 C -0.169 4.169 22 C -0.159 4.159 23 C -0.184 4.184 24 C -0.122 4.122 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.249 0.751 29 H 0.411 0.589 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.033 -3.681 15.377 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C -0.070 4.070 4 O -0.068 6.068 5 C -0.158 4.158 6 C 0.388 3.612 7 O -0.431 6.431 8 N -0.349 5.349 9 C 0.069 3.931 10 H 0.091 0.909 11 C 0.027 3.973 12 N -0.404 5.404 13 C -0.362 4.362 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.628 5.628 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.195 1.195 21 C -0.188 4.188 22 C -0.197 4.197 23 C -0.221 4.221 24 C -0.142 4.142 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.265 0.735 29 H 0.247 0.753 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.574 -4.253 15.331 22.975 hybrid contribution -0.624 0.290 -0.991 1.207 sum -17.199 -3.963 14.340 22.741 Atomic orbital electron populations 1.20258 0.86227 1.04071 1.03098 1.20862 0.99292 0.91473 1.08912 1.25137 0.78817 1.01878 1.01192 1.84085 1.30981 1.21114 1.70658 1.21923 0.96063 0.81283 1.16517 1.16745 0.81883 0.86362 0.76174 1.90764 1.86478 1.13213 1.52647 1.45952 1.04877 1.11275 1.72765 1.20758 0.83298 0.93780 0.95230 0.90933 1.21051 0.94901 0.96437 0.84947 1.42724 1.16090 1.64812 1.16799 1.19055 0.96554 1.23461 0.97163 0.91524 1.25329 1.01094 1.00618 0.97486 1.69849 1.37082 1.42944 1.12944 0.85589 0.81308 0.78413 0.77508 1.20060 1.21913 1.19520 1.22558 1.05046 0.96089 0.95154 1.23009 0.99832 0.93305 1.03535 1.23215 0.94705 1.03955 1.00220 1.22085 0.90512 1.01470 1.00173 0.90704 0.90903 0.89332 0.73511 0.75275 0.93526 0.93277 0.80467 0.93230 0.85979 0.89504 0.86532 0.87840 0.88779 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.39 71.24 0.74 -0.22 16 2 C -0.20 -3.95 6.14 -20.06 -0.12 -4.07 16 3 C 0.00 -0.02 12.00 67.10 0.81 0.79 16 4 O -0.17 -4.56 10.40 -4.97 -0.05 -4.61 16 5 C -0.11 -3.11 7.13 24.07 0.17 -2.94 16 6 C 0.60 19.78 7.11 86.44 0.61 20.40 16 7 O -0.55 -20.14 13.88 -4.33 -0.06 -20.20 16 8 N -0.70 -22.18 4.50 -446.51 -2.01 -24.18 16 9 C 0.17 5.54 2.43 44.99 0.11 5.65 16 10 H 0.07 2.60 7.34 -2.39 -0.02 2.59 16 11 C 0.15 5.63 5.80 86.38 0.50 6.13 16 12 N -0.76 -35.46 5.24 -343.45 -1.80 -37.26 16 13 C -0.23 -13.11 10.47 84.03 0.88 -12.23 16 14 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 15 C -0.05 -3.14 5.50 84.86 0.47 -2.67 16 16 N -0.98 -62.38 13.97 21.65 0.30 -62.08 16 17 Si 0.94 46.83 27.73 68.60 1.90 48.73 16 18 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.85 6.52 99.48 0.65 -12.20 16 21 C -0.17 -4.36 5.36 -10.79 -0.06 -4.42 16 22 C -0.16 -3.71 10.18 30.62 0.31 -3.40 16 23 C -0.18 -4.63 9.73 30.62 0.30 -4.33 16 24 C -0.12 -3.07 10.57 22.39 0.24 -2.83 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.25 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.41 12.64 8.36 -92.71 -0.77 11.87 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.36 16.97 5.20 -92.71 -0.48 16.49 16 33 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 35 H 0.09 2.18 8.05 -2.39 -0.02 2.16 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.09 2.86 5.00 -2.39 -0.01 2.85 16 39 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -71.52 330.79 3.00 -68.52 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.24 Total: 35.22 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.95 Total: -4.15 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -3.50 Total: -123.52 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.11 Total: -24.81 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -71.52 3.00 -68.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716618540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.798 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds