Wall clock time and date at job start Tue Mar 31 2020 00:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33651 * 125.80493 * 2 1 4 4 C 1.34216 * 110.90880 * 180.02562 * 3 2 1 5 5 C 1.34172 * 109.12484 * 359.75012 * 4 3 2 6 6 C 1.36428 * 125.80204 * 180.02562 * 2 1 3 7 7 C 1.47383 * 127.18612 * 359.96562 * 6 2 1 8 8 O 1.21609 * 120.00028 * 359.97438 * 7 6 2 9 9 N 1.34780 * 119.99405 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 6 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.36937 * 120.00198 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47103 * 120.00336 * 19 17 15 22 22 H 1.48503 * 109.46916 * 239.99992 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 24 24 H 1.09001 * 109.46871 * 269.99802 * 1 2 3 25 25 H 1.09002 * 109.47162 * 29.99505 * 1 2 3 26 26 H 1.08999 * 109.47456 * 149.99843 * 1 2 3 27 27 H 1.08004 * 125.43164 * 179.97438 * 4 3 2 28 28 H 1.08003 * 127.02123 * 180.26503 * 5 4 3 29 29 H 0.96995 * 120.00200 * 359.97438 * 9 7 6 30 30 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 31 31 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 32 32 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 33 33 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 34 34 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 35 35 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 36 36 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 37 37 H 0.97001 * 120.00336 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61695 * 25.34675 * 23 10 9 39 39 H 1.08996 * 113.61580 * 156.16953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6848 -0.5992 0.0046 6 6 2.3050 -1.1065 -0.0005 7 6 1.8738 -2.5158 -0.0004 8 8 0.6888 -2.7892 0.0006 9 7 2.7929 -3.5016 -0.0004 10 6 2.3644 -4.9025 0.0002 11 6 2.5518 -5.6048 -1.3551 12 6 3.9641 -5.9832 -0.8727 13 6 4.3847 -7.4028 -1.2580 14 7 4.9959 -7.3868 -2.5893 15 6 5.4529 -8.5509 -3.1470 16 1 5.3632 -9.4809 -2.6053 17 6 6.0315 -8.5358 -4.4087 18 7 6.1414 -7.4024 -5.0688 19 14 6.6543 -10.1240 -5.1698 20 1 6.4154 -11.2496 -4.2311 21 1 5.9334 -10.3789 -6.4428 22 1 8.1097 -10.0060 -5.4402 23 6 3.4204 -5.8695 0.5612 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.4172 1.4284 -0.0011 28 1 4.5927 -1.1841 0.0095 29 1 3.7380 -3.2836 -0.0009 30 1 1.3726 -5.0416 0.4305 31 1 1.8945 -6.4625 -1.4970 32 1 2.5480 -4.9220 -2.2048 33 1 4.7220 -5.2373 -1.1128 34 1 5.1060 -7.7777 -0.5317 35 1 3.5087 -8.0512 -1.2681 36 1 5.0769 -6.5515 -3.0758 37 1 6.5461 -7.3918 -5.9503 38 1 4.1167 -5.4002 1.2563 39 1 3.0008 -6.7992 0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725056156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:02 Heat of formation + Delta-G solvation = 4.146726 kcal Electronic energy + Delta-G solvation = -20831.230187 eV Core-core repulsion = 17548.365750 eV Total energy + Delta-G solvation = -3282.864437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79569 -40.02745 -38.17921 -34.53523 -33.50823 -32.84456 -31.98960 -30.79056 -27.44491 -26.60370 -25.48236 -24.01627 -23.00926 -21.67875 -21.17167 -19.97764 -18.97397 -18.11170 -17.03421 -16.57060 -16.09964 -15.83496 -15.00722 -14.78306 -14.66179 -14.18370 -13.94476 -13.54464 -13.33192 -13.28142 -13.15321 -13.08280 -12.75408 -12.33864 -12.09956 -11.97287 -11.61362 -11.02522 -10.83470 -10.46297 -10.31893 -10.06065 -10.05436 -9.99999 -9.80751 -9.59508 -9.02667 -8.84445 -8.74725 -6.88341 -5.74397 -3.02485 1.17021 1.81790 2.55682 3.15966 3.26685 3.44404 3.49935 3.52284 4.26880 4.59312 4.59888 4.62692 4.73134 4.85351 5.02351 5.13946 5.17085 5.26745 5.29081 5.41373 5.58564 5.60052 5.76597 5.88225 5.92695 5.95973 6.02359 6.05987 6.13466 6.27794 6.34763 6.45048 6.66204 6.77417 6.81088 6.96116 7.50365 7.72381 8.19311 8.44836 9.55853 10.15320 10.49700 11.48684 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.003066 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.827626 B = 9131.653008 C = 9607.639642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.077 3.923 3 O -0.178 6.178 4 C -0.040 4.040 5 C -0.187 4.187 6 C -0.246 4.246 7 C 0.592 3.408 8 O -0.544 6.544 9 N -0.701 5.701 10 C 0.117 3.883 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.208 0.792 28 H 0.158 0.842 29 H 0.401 0.599 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 16.640 13.792 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.024 3.976 3 O -0.074 6.074 4 C -0.105 4.105 5 C -0.206 4.206 6 C -0.250 4.250 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.177 4.177 12 C -0.132 4.132 13 C 0.035 3.965 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.176 4.176 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.128 0.872 27 H 0.225 0.775 28 H 0.176 0.824 29 H 0.236 0.764 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.620 16.535 13.780 23.186 hybrid contribution 1.355 -0.622 -0.759 1.673 sum -7.265 15.913 13.021 21.807 Atomic orbital electron populations 1.20618 0.83730 1.05168 1.04355 1.22833 0.94145 0.83104 0.97519 1.83768 1.17212 1.34996 1.71391 1.23858 0.83484 0.96426 1.06754 1.22911 0.96724 0.94633 1.06356 1.21173 0.93379 0.93892 1.16578 1.17160 0.85467 0.83665 0.75619 1.90742 1.16586 1.84048 1.50986 1.45461 1.09579 1.05426 1.74622 1.21945 0.99044 0.79452 0.98372 1.23445 0.97441 1.00300 0.96535 1.22788 0.96500 0.99369 0.94538 1.20635 0.95260 0.92276 0.88335 1.42363 1.71755 1.08361 1.15143 1.19295 1.31238 0.87671 0.98673 0.91186 1.24741 1.02074 0.96929 0.97414 1.69669 1.50418 1.24320 1.13888 0.86123 0.78226 0.82820 0.79082 1.20571 1.21883 1.21911 1.23307 0.97788 0.99270 0.97262 0.89372 0.90419 0.87183 0.77520 0.82439 0.76410 0.88262 0.89086 0.91312 0.89497 0.96423 0.96192 0.78341 0.93623 0.91294 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.89 36.00 0.36 -0.37 16 2 C 0.08 0.85 7.37 -34.96 -0.26 0.59 16 3 O -0.18 -1.79 10.52 7.65 0.08 -1.71 16 4 C -0.04 -0.32 12.03 29.30 0.35 0.03 16 5 C -0.19 -1.76 10.60 -37.46 -0.40 -2.16 16 6 C -0.25 -2.93 6.31 -103.27 -0.65 -3.58 16 7 C 0.59 8.15 7.81 -12.54 -0.10 8.06 16 8 O -0.54 -8.81 14.46 5.27 0.08 -8.73 16 9 N -0.70 -8.65 5.26 -54.10 -0.28 -8.94 16 10 C 0.12 1.53 4.30 -67.12 -0.29 1.24 16 11 C -0.14 -2.12 7.45 -25.82 -0.19 -2.31 16 12 C -0.11 -1.78 3.64 -89.71 -0.33 -2.10 16 13 C 0.16 3.26 6.10 -4.05 -0.02 3.23 16 14 N -0.73 -18.79 5.60 -59.91 -0.34 -19.13 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 19 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 C -0.14 -1.69 7.38 -25.92 -0.19 -1.88 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.11 1.15 6.49 -51.93 -0.34 0.81 16 27 H 0.21 0.86 8.06 -52.48 -0.42 0.43 16 28 H 0.16 1.15 7.74 -52.48 -0.41 0.74 16 29 H 0.40 4.20 7.88 -40.82 -0.32 3.88 16 30 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 31 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 36 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -33.91 332.33 -7.23 -41.14 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.51 Total: 9.32 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.97 Total: -6.72 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.10 Total: -55.93 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.16 Total: -10.44 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.91 -7.23 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725056156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.286 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds