Wall clock time and date at job start Tue Mar 31 2020 00:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33651 * 125.80493 * 2 1 4 4 C 1.34216 * 110.90880 * 180.02562 * 3 2 1 5 5 C 1.34172 * 109.12484 * 359.75012 * 4 3 2 6 6 C 1.36428 * 125.80204 * 180.02562 * 2 1 3 7 7 C 1.47383 * 127.18612 * 359.96562 * 6 2 1 8 8 O 1.21609 * 120.00028 * 359.97438 * 7 6 2 9 9 N 1.34780 * 119.99405 * 180.02562 * 7 6 2 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 6 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.36937 * 120.00198 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47103 * 120.00336 * 19 17 15 22 22 H 1.48503 * 109.46916 * 239.99992 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 24 24 H 1.09001 * 109.46871 * 269.99802 * 1 2 3 25 25 H 1.09002 * 109.47162 * 29.99505 * 1 2 3 26 26 H 1.08999 * 109.47456 * 149.99843 * 1 2 3 27 27 H 1.08004 * 125.43164 * 179.97438 * 4 3 2 28 28 H 1.08003 * 127.02123 * 180.26503 * 5 4 3 29 29 H 0.96995 * 120.00200 * 359.97438 * 9 7 6 30 30 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 31 31 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 32 32 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 33 33 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 34 34 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 35 35 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 36 36 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 37 37 H 0.97001 * 120.00336 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61695 * 25.34675 * 23 10 9 39 39 H 1.08996 * 113.61580 * 156.16953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6848 -0.5992 0.0046 6 6 2.3050 -1.1065 -0.0005 7 6 1.8738 -2.5158 -0.0004 8 8 0.6888 -2.7892 0.0006 9 7 2.7929 -3.5016 -0.0004 10 6 2.3644 -4.9025 0.0002 11 6 2.5518 -5.6048 -1.3551 12 6 3.9641 -5.9832 -0.8727 13 6 4.3847 -7.4028 -1.2580 14 7 4.9959 -7.3868 -2.5893 15 6 5.4529 -8.5509 -3.1470 16 1 5.3632 -9.4809 -2.6053 17 6 6.0315 -8.5358 -4.4087 18 7 6.1414 -7.4024 -5.0688 19 14 6.6543 -10.1240 -5.1698 20 1 6.4154 -11.2496 -4.2311 21 1 5.9334 -10.3789 -6.4428 22 1 8.1097 -10.0060 -5.4402 23 6 3.4204 -5.8695 0.5612 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 4.4172 1.4284 -0.0011 28 1 4.5927 -1.1841 0.0095 29 1 3.7380 -3.2836 -0.0009 30 1 1.3726 -5.0416 0.4305 31 1 1.8945 -6.4625 -1.4970 32 1 2.5480 -4.9220 -2.2048 33 1 4.7220 -5.2373 -1.1128 34 1 5.1060 -7.7777 -0.5317 35 1 3.5087 -8.0512 -1.2681 36 1 5.0769 -6.5515 -3.0758 37 1 6.5461 -7.3918 -5.9503 38 1 4.1167 -5.4002 1.2563 39 1 3.0008 -6.7992 0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725056156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:59 Heat of formation + Delta-G solvation = -18.939196 kcal Electronic energy + Delta-G solvation = -20832.231268 eV Core-core repulsion = 17548.365750 eV Total energy + Delta-G solvation = -3283.865518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.54049 -41.14250 -39.35193 -36.34752 -34.63970 -33.84493 -32.89198 -32.54396 -28.73064 -27.76006 -26.63952 -25.47742 -24.35817 -22.97468 -22.17282 -20.88659 -20.20443 -19.06996 -18.89845 -17.34058 -17.16802 -16.77390 -16.68576 -15.96227 -15.90216 -15.53550 -15.30956 -15.07221 -14.48120 -14.40823 -14.14719 -13.83744 -13.78543 -13.62065 -13.38161 -13.12170 -12.92051 -12.72690 -12.67443 -12.12566 -11.93562 -11.75116 -11.36894 -11.15624 -11.07685 -10.86656 -10.85286 -10.06668 -9.52845 -8.98052 -7.95285 -5.23651 0.31126 1.11995 1.46922 1.47813 1.58006 1.82358 2.21336 2.28940 2.55959 3.37842 3.57339 3.59457 3.61322 3.78093 3.89039 3.93747 3.95842 4.33093 4.35455 4.55100 4.61691 4.62834 4.71924 4.78185 4.84348 4.85020 4.92260 4.94012 4.98866 5.15121 5.21242 5.27878 5.34598 5.39276 5.49602 5.67380 6.03023 6.27644 6.52593 7.17854 7.33432 8.11384 8.33658 9.28607 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.003066 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.827626 B = 9131.653008 C = 9607.639642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.069 3.931 3 O -0.181 6.181 4 C -0.029 4.029 5 C -0.201 4.201 6 C -0.274 4.274 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.694 5.694 10 C 0.127 3.873 11 C -0.143 4.143 12 C -0.111 4.111 13 C 0.160 3.840 14 N -0.746 5.746 15 C -0.244 4.244 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.292 1.292 23 C -0.115 4.115 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.249 0.751 28 H 0.176 0.824 29 H 0.411 0.589 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.091 0.909 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 17.033 15.146 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 O -0.077 6.077 4 C -0.094 4.094 5 C -0.220 4.220 6 C -0.278 4.278 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.345 5.345 10 C 0.021 3.979 11 C -0.182 4.182 12 C -0.130 4.130 13 C 0.034 3.966 14 N -0.388 5.388 15 C -0.376 4.376 16 H 0.093 0.907 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.219 1.219 23 C -0.153 4.153 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.265 0.735 28 H 0.193 0.807 29 H 0.248 0.752 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.984 16.918 15.180 24.092 hybrid contribution 1.142 -0.706 -1.152 1.769 sum -6.842 16.212 14.028 22.504 Atomic orbital electron populations 1.20628 0.82865 1.05185 1.05056 1.23152 0.94991 0.83227 0.97118 1.83791 1.18063 1.34656 1.71238 1.24675 0.83468 0.96824 1.04466 1.23176 0.96215 0.95444 1.07141 1.21249 0.95178 0.93089 1.18283 1.17501 0.85159 0.84645 0.74959 1.90718 1.17865 1.84668 1.52570 1.45406 1.10031 1.04943 1.74073 1.21792 0.99461 0.79942 0.96693 1.23456 0.97380 1.00185 0.97160 1.22708 0.96329 0.96567 0.97356 1.20826 0.94809 0.95128 0.85839 1.42604 1.72048 1.07180 1.17013 1.19706 1.30308 0.88736 0.98867 0.90659 1.25583 1.03107 1.00145 0.98179 1.69824 1.51805 1.26439 1.14090 0.85067 0.77214 0.79429 0.78028 1.18982 1.22132 1.21911 1.23219 0.97160 0.99644 0.95292 0.88286 0.88324 0.89140 0.73538 0.80671 0.75234 0.88492 0.89461 0.93352 0.89809 0.95930 0.96114 0.79594 0.94054 0.89028 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.89 71.23 0.70 -0.71 16 2 C 0.07 1.46 7.37 25.26 0.19 1.64 16 3 O -0.18 -3.34 10.52 4.47 0.05 -3.30 16 4 C -0.03 -0.41 12.03 66.89 0.80 0.40 16 5 C -0.20 -3.44 10.60 23.64 0.25 -3.18 16 6 C -0.27 -6.38 6.31 -18.99 -0.12 -6.50 16 7 C 0.59 16.16 7.81 86.65 0.68 16.83 16 8 O -0.58 -19.02 14.46 -4.06 -0.06 -19.08 16 9 N -0.69 -16.60 5.26 -443.33 -2.33 -18.93 16 10 C 0.13 3.19 4.30 45.52 0.20 3.38 16 11 C -0.14 -4.37 7.45 31.18 0.23 -4.14 16 12 C -0.11 -3.38 3.64 -10.21 -0.04 -3.41 16 13 C 0.16 6.30 6.10 86.38 0.53 6.83 16 14 N -0.75 -38.46 5.60 -343.46 -1.92 -40.39 16 15 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 18 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 19 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.11 -2.55 7.38 31.12 0.23 -2.32 16 24 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.96 6.49 -2.39 -0.02 1.95 16 27 H 0.25 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.18 2.19 7.74 -2.91 -0.02 2.17 16 29 H 0.41 8.07 7.88 -92.71 -0.73 7.34 16 30 H 0.10 2.56 7.50 -2.39 -0.02 2.54 16 31 H 0.09 2.71 7.90 -2.39 -0.02 2.69 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.02 0.83 7.85 -2.39 -0.02 0.81 16 36 H 0.37 20.48 7.67 -92.71 -0.71 19.77 16 37 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 Total: -1.00 -73.42 332.33 2.63 -70.79 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.37 Total: 30.49 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.96 Total: -8.29 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -3.97 Total: -119.26 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.01 Total: -22.38 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.42 2.63 -70.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725056156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.851 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds