Wall clock time and date at job start Tue Mar 31 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08992 * 109.46993 * 295.00086 * 10 9 8 12 12 N 1.46506 * 109.46943 * 54.99919 * 10 9 8 13 13 C 1.36929 * 119.99909 * 205.00011 * 12 10 9 14 14 H 1.08006 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99668 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47137 * 90.00133 * 17 15 13 19 19 H 1.48503 * 109.46884 * 210.00261 * 17 15 13 20 20 H 1.48502 * 109.47201 * 329.99762 * 17 15 13 21 21 C 1.52995 * 109.47195 * 174.99817 * 10 9 8 22 22 C 1.52999 * 117.50225 * 248.74775 * 21 10 9 23 23 C 1.52999 * 117.49761 * 180.08552 * 21 10 9 24 24 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 25 25 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 26 26 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 27 27 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 28 28 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 0.97002 * 119.99781 * 25.00223 * 12 10 9 33 33 H 0.96996 * 119.99816 * 180.02562 * 16 15 13 34 34 H 1.09006 * 115.55266 * 34.42181 * 21 10 9 35 35 H 1.08993 * 117.49781 * 359.97438 * 22 21 10 36 36 H 1.09000 * 117.50138 * 145.02405 * 22 21 10 37 37 H 1.09009 * 117.50018 * 214.98040 * 23 21 10 38 38 H 1.08997 * 117.49907 * 0.02562 * 23 21 10 39 39 H 1.07999 * 126.64240 * 179.78042 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 1 8.5368 -0.2634 -0.9227 12 7 8.4168 0.0977 1.1399 13 6 9.0780 1.2958 1.0915 14 1 9.6579 1.5577 0.2188 15 6 9.0029 2.1738 2.1641 16 7 8.2966 1.8544 3.2278 17 14 9.9043 3.8086 2.0978 18 1 9.0137 4.8414 1.5103 19 1 10.2944 4.2148 3.4719 20 1 11.1215 3.6690 1.2586 21 6 9.7570 -1.6864 0.1387 22 6 10.5457 -1.5883 1.4461 23 6 11.1043 -0.9620 0.1659 24 6 2.3408 -1.1291 -0.0066 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5142 28 1 1.9769 2.1146 0.0004 29 1 6.1245 0.0584 -0.0014 30 1 7.2697 -2.3638 0.8916 31 1 7.2775 -2.3625 -0.8884 32 1 7.8956 -0.1374 1.9235 33 1 8.2438 2.4680 3.9771 34 1 9.7178 -2.6581 -0.3537 35 1 10.1669 -0.9127 2.2129 36 1 11.0258 -2.4953 1.8135 37 1 11.9517 -1.4573 -0.3084 38 1 11.0927 0.1253 0.0910 39 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731402810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:26 Heat of formation + Delta-G solvation = 12.498690 kcal Electronic energy + Delta-G solvation = -21422.916885 eV Core-core repulsion = 18140.414616 eV Total energy + Delta-G solvation = -3282.502269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.61681 -39.21272 -37.59463 -34.68837 -34.10475 -33.24764 -31.10223 -30.35441 -28.31822 -27.17595 -24.24741 -23.27524 -21.97635 -21.42018 -21.04510 -19.83786 -18.98699 -17.88412 -17.18307 -16.28809 -16.18270 -15.67176 -15.19582 -14.69219 -14.44470 -13.99566 -13.61774 -13.52108 -13.27264 -13.23738 -12.93886 -12.87023 -12.60166 -12.08463 -11.77503 -11.32047 -11.18804 -10.90503 -10.85454 -10.53590 -10.13896 -10.07674 -9.68926 -9.68291 -9.47666 -9.18449 -8.99700 -8.83002 -8.45596 -7.08308 -5.84337 -3.14758 1.19377 2.32676 2.83507 3.37991 3.39895 3.44482 3.45688 3.53833 4.48791 4.62555 4.74311 4.78291 4.93331 5.30361 5.35314 5.46112 5.46930 5.55006 5.62042 5.71700 5.73222 5.83638 5.89891 5.94530 5.97462 6.03236 6.06238 6.38318 6.39829 6.41973 6.62566 6.69943 6.80393 6.95027 7.00218 7.27685 7.64689 7.83877 8.32281 8.38046 9.44876 9.98178 10.34326 11.37146 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.004989 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.609919 B = 5610.683363 C = 7042.155402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.010 4.010 4 O -0.154 6.154 5 C -0.065 4.065 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.698 5.698 9 C 0.117 3.883 10 C 0.191 3.809 11 H 0.058 0.942 12 N -0.717 5.717 13 C -0.241 4.241 14 H 0.072 0.928 15 C -0.007 4.007 16 N -0.928 5.928 17 Si 0.903 3.097 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.178 4.178 22 C -0.163 4.163 23 C -0.175 4.175 24 C -0.128 4.128 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.207 0.793 29 H 0.416 0.584 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 -3.627 -7.312 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C -0.080 4.080 4 O -0.048 6.048 5 C -0.117 4.117 6 C 0.382 3.618 7 O -0.415 6.415 8 N -0.349 5.349 9 C -0.007 4.007 10 C 0.081 3.919 11 H 0.076 0.924 12 N -0.359 5.359 13 C -0.372 4.372 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.734 3.266 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.207 1.207 21 C -0.199 4.199 22 C -0.200 4.200 23 C -0.212 4.212 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.223 0.777 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.667 -4.134 -7.339 12.822 hybrid contribution 0.310 1.271 0.370 1.359 sum -9.357 -2.863 -6.970 12.014 Atomic orbital electron populations 1.20148 0.88841 1.02709 1.02061 1.20439 0.97532 0.92483 1.09630 1.24190 0.80119 0.99999 1.03722 1.84144 1.29091 1.21681 1.69901 1.22185 0.96275 0.80614 1.12633 1.16570 0.81511 0.86264 0.77414 1.90839 1.86246 1.12312 1.52153 1.45925 1.04821 1.12003 1.72113 1.21687 0.83514 0.93603 1.01881 1.19997 0.89248 0.89651 0.93037 0.92404 1.42476 1.59693 1.17036 1.16721 1.19161 1.23745 0.93346 1.00942 0.91028 1.24710 1.00467 0.98646 0.96527 1.69657 1.44362 1.36872 1.06626 0.86263 0.79333 0.84284 0.76726 1.21785 1.21860 1.20746 1.23056 0.94277 0.99840 1.02766 1.22917 1.02862 1.01737 0.92476 1.22854 0.95096 1.00904 1.02350 1.21767 0.90574 1.00349 1.02143 0.91491 0.91425 0.91563 0.77666 0.74693 0.91252 0.91407 0.77907 0.93442 0.89555 0.86327 0.91262 0.91007 0.87919 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.29 16 2 C -0.20 -2.35 6.14 -104.93 -0.64 -2.99 16 3 C -0.01 -0.12 12.00 29.63 0.36 0.24 16 4 O -0.15 -2.37 10.40 5.01 0.05 -2.31 16 5 C -0.06 -1.04 7.13 -36.79 -0.26 -1.31 16 6 C 0.60 10.68 7.79 -12.86 -0.10 10.58 16 7 O -0.54 -10.64 16.86 5.20 0.09 -10.55 16 8 N -0.70 -12.22 5.38 -61.62 -0.33 -12.55 16 9 C 0.12 2.00 5.21 -4.04 -0.02 1.98 16 10 C 0.19 3.53 2.86 -67.93 -0.19 3.33 16 11 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 12 N -0.72 -16.06 3.08 -53.42 -0.16 -16.23 16 13 C -0.24 -6.03 8.15 -15.06 -0.12 -6.15 16 14 H 0.07 1.77 6.91 -52.48 -0.36 1.41 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 17 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.18 -3.08 5.70 -90.62 -0.52 -3.60 16 22 C -0.16 -3.04 9.74 -26.69 -0.26 -3.30 16 23 C -0.18 -3.11 9.87 -26.69 -0.26 -3.38 16 24 C -0.13 -1.80 10.57 -39.39 -0.42 -2.21 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.21 1.62 8.06 -52.48 -0.42 1.19 16 29 H 0.42 7.55 7.89 -40.82 -0.32 7.23 16 30 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 9.56 7.80 -40.82 -0.32 9.24 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 38 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 39 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -29.23 333.83 -7.25 -36.48 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -5.45 Total: 16.86 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.17 Total: -7.38 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.23 Total: -54.49 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.14 Total: -12.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.23 -7.25 -36.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731402810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.980 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds