Wall clock time and date at job start Tue Mar 31 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08992 * 109.46993 * 295.00086 * 10 9 8 12 12 N 1.46506 * 109.46943 * 54.99919 * 10 9 8 13 13 C 1.36929 * 119.99909 * 205.00011 * 12 10 9 14 14 H 1.08006 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99668 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47137 * 90.00133 * 17 15 13 19 19 H 1.48503 * 109.46884 * 210.00261 * 17 15 13 20 20 H 1.48502 * 109.47201 * 329.99762 * 17 15 13 21 21 C 1.52995 * 109.47195 * 174.99817 * 10 9 8 22 22 C 1.52999 * 117.50225 * 248.74775 * 21 10 9 23 23 C 1.52999 * 117.49761 * 180.08552 * 21 10 9 24 24 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 25 25 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 26 26 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 27 27 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 28 28 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 0.97002 * 119.99781 * 25.00223 * 12 10 9 33 33 H 0.96996 * 119.99816 * 180.02562 * 16 15 13 34 34 H 1.09006 * 115.55266 * 34.42181 * 21 10 9 35 35 H 1.08993 * 117.49781 * 359.97438 * 22 21 10 36 36 H 1.09000 * 117.50138 * 145.02405 * 22 21 10 37 37 H 1.09009 * 117.50018 * 214.98040 * 23 21 10 38 38 H 1.08997 * 117.49907 * 0.02562 * 23 21 10 39 39 H 1.07999 * 126.64240 * 179.78042 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 8.4965 -0.8291 0.0081 11 1 8.5368 -0.2634 -0.9227 12 7 8.4168 0.0977 1.1399 13 6 9.0780 1.2958 1.0915 14 1 9.6579 1.5577 0.2188 15 6 9.0029 2.1738 2.1641 16 7 8.2966 1.8544 3.2278 17 14 9.9043 3.8086 2.0978 18 1 9.0137 4.8414 1.5103 19 1 10.2944 4.2148 3.4719 20 1 11.1215 3.6690 1.2586 21 6 9.7570 -1.6864 0.1387 22 6 10.5457 -1.5883 1.4461 23 6 11.1043 -0.9620 0.1659 24 6 2.3408 -1.1291 -0.0066 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5142 28 1 1.9769 2.1146 0.0004 29 1 6.1245 0.0584 -0.0014 30 1 7.2697 -2.3638 0.8916 31 1 7.2775 -2.3625 -0.8884 32 1 7.8956 -0.1374 1.9235 33 1 8.2438 2.4680 3.9771 34 1 9.7178 -2.6581 -0.3537 35 1 10.1669 -0.9127 2.2129 36 1 11.0258 -2.4953 1.8135 37 1 11.9517 -1.4573 -0.3084 38 1 11.0927 0.1253 0.0910 39 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731402810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:26 Heat of formation + Delta-G solvation = -5.824394 kcal Electronic energy + Delta-G solvation = -21423.711433 eV Core-core repulsion = 18140.414616 eV Total energy + Delta-G solvation = -3283.296817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.68617 -40.62632 -39.12585 -36.06390 -35.23399 -34.97174 -32.73524 -31.59959 -29.85137 -28.08228 -25.84303 -24.91117 -23.35162 -22.84338 -22.13938 -21.18111 -20.39166 -19.32799 -18.81361 -17.45009 -17.34819 -17.09689 -16.70229 -16.32974 -15.96841 -15.54895 -15.22976 -14.73623 -14.55715 -14.31567 -14.05592 -13.93324 -13.72031 -13.49305 -12.96659 -12.86677 -12.67964 -12.60479 -12.53452 -12.12921 -11.95529 -11.61937 -11.47704 -11.03301 -10.85450 -10.72135 -10.62182 -10.20357 -9.53036 -9.00419 -7.88769 -5.16715 0.02977 1.34736 1.48871 1.50309 1.57057 1.72770 2.09312 2.26684 2.58263 3.13804 3.46096 3.68840 3.83839 3.85819 3.96991 4.04938 4.27123 4.32993 4.36374 4.48404 4.57167 4.62458 4.68470 4.89646 4.90267 4.93548 4.97823 5.06128 5.09553 5.17654 5.20540 5.36273 5.47178 5.53603 5.66601 5.69741 5.87767 6.30995 6.44466 6.98304 7.39307 8.09608 8.34958 9.33838 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.004989 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.609919 B = 5610.683363 C = 7042.155402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.203 4.203 3 C -0.004 4.004 4 O -0.174 6.174 5 C -0.105 4.105 6 C 0.596 3.404 7 O -0.563 6.563 8 N -0.700 5.700 9 C 0.125 3.875 10 C 0.192 3.808 11 H 0.061 0.939 12 N -0.721 5.721 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.066 4.066 16 N -0.965 5.965 17 Si 0.958 3.042 18 H -0.290 1.290 19 H -0.304 1.304 20 H -0.272 1.272 21 C -0.167 4.167 22 C -0.173 4.173 23 C -0.169 4.169 24 C -0.122 4.122 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.246 0.754 29 H 0.412 0.588 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 -3.648 -8.866 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.204 4.204 3 C -0.073 4.073 4 O -0.070 6.070 5 C -0.156 4.156 6 C 0.383 3.617 7 O -0.446 6.446 8 N -0.349 5.349 9 C 0.001 3.999 10 C 0.083 3.917 11 H 0.079 0.921 12 N -0.361 5.361 13 C -0.352 4.352 14 H 0.095 0.905 15 C -0.259 4.259 16 N -0.616 5.616 17 Si 0.789 3.211 18 H -0.218 1.218 19 H -0.231 1.231 20 H -0.197 1.197 21 C -0.189 4.189 22 C -0.211 4.211 23 C -0.206 4.206 24 C -0.143 4.143 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.262 0.738 29 H 0.248 0.752 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.205 0.795 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.298 -4.171 -8.947 14.265 hybrid contribution 0.437 1.254 0.789 1.545 sum -9.861 -2.916 -8.158 13.127 Atomic orbital electron populations 1.20257 0.86066 1.03907 1.03311 1.20859 0.99319 0.91342 1.08870 1.25116 0.78869 1.01891 1.01422 1.84119 1.31043 1.21273 1.70535 1.21944 0.96158 0.81218 1.16325 1.16792 0.82021 0.86213 0.76635 1.90802 1.86754 1.13358 1.53645 1.45919 1.05074 1.11705 1.72157 1.21626 0.82769 0.93210 1.02286 1.20142 0.90633 0.89478 0.91491 0.92136 1.42534 1.59150 1.17135 1.17309 1.19432 1.21878 0.93608 1.00236 0.90520 1.25325 1.02181 1.01619 0.96753 1.69805 1.46794 1.37717 1.07325 0.85363 0.78620 0.81165 0.75955 1.21789 1.23109 1.19681 1.23035 0.93150 1.00791 1.01887 1.22777 1.04142 1.02090 0.92054 1.22843 0.96407 0.99699 1.01677 1.22077 0.90355 1.01480 1.00373 0.90123 0.91006 0.89658 0.73764 0.75160 0.92354 0.89350 0.79451 0.94413 0.86382 0.90515 0.89002 0.87938 0.90411 0.81945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.39 71.24 0.74 -0.32 16 2 C -0.20 -4.37 6.14 -20.06 -0.12 -4.49 16 3 C 0.00 -0.08 12.00 67.10 0.81 0.73 16 4 O -0.17 -5.31 10.40 -4.97 -0.05 -5.36 16 5 C -0.10 -3.41 7.13 24.07 0.17 -3.24 16 6 C 0.60 21.72 7.79 86.44 0.67 22.39 16 7 O -0.56 -22.70 16.86 -4.33 -0.07 -22.77 16 8 N -0.70 -24.81 5.38 -467.09 -2.51 -27.32 16 9 C 0.12 4.20 5.21 86.38 0.45 4.66 16 10 C 0.19 6.92 2.86 44.99 0.13 7.05 16 11 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 12 N -0.72 -32.71 3.08 -322.94 -0.99 -33.70 16 13 C -0.22 -11.07 8.15 84.04 0.69 -10.38 16 14 H 0.08 3.75 6.91 -2.91 -0.02 3.73 16 15 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 16 N -0.97 -56.70 13.06 21.65 0.28 -56.41 16 17 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.17 -5.47 5.70 -10.80 -0.06 -5.53 16 22 C -0.17 -6.31 9.74 30.62 0.30 -6.01 16 23 C -0.17 -5.69 9.87 30.62 0.30 -5.39 16 24 C -0.12 -3.36 10.57 22.39 0.24 -3.12 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.25 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.41 15.29 7.89 -92.71 -0.73 14.55 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.37 19.03 7.80 -92.71 -0.72 18.31 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.12 3.19 8.11 -2.38 -0.02 3.17 16 35 H 0.08 3.50 6.68 -2.39 -0.02 3.49 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 38 H 0.08 3.02 6.22 -2.39 -0.01 3.00 16 39 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.58 333.83 3.07 -61.51 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.38 Total: 44.23 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.77 Total: -6.77 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -3.23 Total: -117.44 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.12 Total: -28.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.58 3.07 -61.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731402810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.683 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds