Wall clock time and date at job start Tue Mar 31 2020 01:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35130 * 126.44164 * 2 1 4 4 O 1.33934 * 108.76889 * 179.75406 * 3 2 1 5 5 C 1.34909 * 109.38340 * 0.40574 * 4 3 2 6 6 C 1.46652 * 125.98812 * 179.86223 * 5 4 3 7 7 O 1.21698 * 120.00060 * 179.68903 * 6 5 4 8 8 N 1.34780 * 120.00284 * 359.68601 * 6 5 4 9 9 C 1.47023 * 125.64409 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.27149 * 178.95789 * 9 8 6 11 11 C 1.55282 * 103.00430 * 337.88615 * 10 9 8 12 12 H 1.09001 * 110.95548 * 277.33125 * 11 10 9 13 13 C 1.52999 * 111.09626 * 153.45081 * 11 10 9 14 14 N 1.46510 * 109.46866 * 181.35720 * 13 11 10 15 15 C 1.36929 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00267 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00319 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46487 * 60.00238 * 19 17 15 21 21 H 1.48495 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47060 * 300.00318 * 19 17 15 23 23 C 1.47419 * 125.65006 * 179.97438 * 8 6 5 24 24 C 1.36552 * 108.02482 * 359.59810 * 5 4 3 25 25 H 1.09007 * 109.47201 * 269.99823 * 1 2 3 26 26 H 1.09002 * 109.47259 * 29.99956 * 1 2 3 27 27 H 1.09003 * 109.47329 * 150.00055 * 1 2 3 28 28 H 1.08005 * 125.61463 * 359.96505 * 3 2 1 29 29 H 1.09009 * 109.87859 * 298.37607 * 9 8 6 30 30 H 1.09003 * 109.88678 * 59.38281 * 9 8 6 31 31 H 1.09006 * 110.71959 * 96.16400 * 10 9 8 32 32 H 1.08997 * 110.71908 * 219.26179 * 10 9 8 33 33 H 1.09001 * 109.47239 * 301.34870 * 13 11 10 34 34 H 1.08999 * 109.47584 * 61.35828 * 13 11 10 35 35 H 0.96993 * 119.99543 * 359.97438 * 14 13 11 36 36 H 0.97002 * 120.00127 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36926 * 322.95057 * 23 8 6 38 38 H 1.08995 * 110.36556 * 85.16341 * 23 8 6 39 39 H 1.07997 * 126.64686 * 180.26653 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0054 5 6 3.6261 -0.6680 0.0000 6 6 4.8379 -1.4939 0.0005 7 8 4.7472 -2.7075 0.0009 8 7 6.0522 -0.9090 0.0004 9 6 6.3055 0.5392 -0.0007 10 6 7.8358 0.7367 0.0264 11 6 8.3511 -0.6065 0.6108 12 1 8.2926 -0.6061 1.6992 13 6 9.7771 -0.9007 0.1406 14 7 10.2150 -2.1884 0.6852 15 6 11.4663 -2.6637 0.3969 16 1 12.1304 -2.0896 -0.2323 17 6 11.8814 -3.8834 0.9133 18 7 11.0720 -4.5834 1.6797 19 14 13.5883 -4.5323 0.5195 20 1 14.6084 -3.5700 1.0080 21 1 13.7857 -5.8438 1.1875 22 1 13.7279 -4.6985 -0.9495 23 6 7.3461 -1.6153 0.0013 24 6 2.3408 -1.1291 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9769 2.1146 -0.0005 29 1 5.8898 0.9876 -0.9032 30 1 5.8549 0.9952 0.8809 31 1 8.2227 0.8906 -0.9810 32 1 8.1055 1.5714 0.6733 33 1 9.7996 -0.9403 -0.9485 34 1 10.4446 -0.1128 0.4894 35 1 9.6184 -2.7041 1.2499 36 1 11.3622 -5.4356 2.0409 37 1 7.2882 -2.5125 0.6177 38 1 7.6381 -1.8735 -1.0165 39 1 2.0266 -2.1624 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731669182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:42 Heat of formation + Delta-G solvation = -9.618072 kcal Electronic energy + Delta-G solvation = -21134.749401 eV Core-core repulsion = 17851.288078 eV Total energy + Delta-G solvation = -3283.461323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -42.89379 -39.79152 -37.61387 -34.77624 -34.36831 -32.30698 -30.81530 -30.31999 -28.75981 -27.56362 -25.70333 -23.95138 -22.41885 -21.90561 -21.20030 -20.03766 -19.32198 -17.63806 -17.01453 -16.70854 -16.50354 -16.00432 -15.31247 -14.63462 -14.43929 -13.86234 -13.67239 -13.48262 -13.40451 -13.28061 -13.16550 -12.93683 -12.67886 -12.56390 -12.19382 -11.95587 -11.72546 -11.28767 -10.83645 -10.65438 -10.60926 -10.42224 -10.22376 -10.02527 -9.92673 -9.66163 -8.88769 -8.85917 -8.53533 -6.91625 -5.73794 -3.03524 0.93185 2.08738 2.50575 3.05649 3.15015 3.46219 3.50280 3.51799 4.29743 4.52107 4.58579 4.66523 4.68655 4.82532 4.99214 5.08406 5.29460 5.33733 5.38769 5.47923 5.54747 5.60298 5.65227 5.68647 5.75318 5.87955 5.96274 6.03221 6.09072 6.16712 6.23069 6.38531 6.39501 6.67734 6.71595 6.82540 7.46460 7.71060 8.04115 8.44294 9.55426 10.12131 10.46532 11.48777 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039743 B = 0.003195 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.357759 B = 8762.896670 C = 9337.335744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.194 4.194 3 C -0.018 4.018 4 O -0.158 6.158 5 C -0.063 4.063 6 C 0.610 3.390 7 O -0.518 6.518 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.125 4.125 11 C -0.105 4.105 12 H 0.085 0.915 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.116 3.884 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.207 0.793 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.669 15.462 -3.623 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.195 4.195 3 C -0.087 4.087 4 O -0.053 6.053 5 C -0.115 4.115 6 C 0.397 3.603 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.125 4.125 12 H 0.104 0.896 13 C 0.037 3.963 14 N -0.378 5.378 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.005 4.005 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.332 14.924 -3.687 24.699 hybrid contribution 0.534 -0.524 0.016 0.749 sum -18.798 14.399 -3.671 23.962 Atomic orbital electron populations 1.20178 0.88691 1.02800 1.02309 1.20479 0.97663 0.92439 1.08936 1.24187 0.80248 0.99963 1.04335 1.84155 1.28957 1.21777 1.70422 1.22091 0.96038 0.80451 1.12929 1.16180 0.80292 0.86033 0.77753 1.90920 1.85364 1.12022 1.51265 1.48458 1.05741 1.08352 1.71546 1.22098 0.97184 0.80717 1.01923 1.22684 0.92791 0.98334 1.02504 1.22614 0.95853 0.93217 1.00802 0.89620 1.20585 0.89846 0.89677 0.96168 1.42362 1.16105 1.19121 1.60192 1.19159 0.91267 1.01650 1.25298 0.91197 1.24759 0.98324 0.97557 1.00263 1.69654 1.35751 1.14915 1.37693 0.86258 0.84125 0.78013 0.77715 1.21288 1.21692 1.21255 1.22400 0.79747 0.96235 1.02149 1.21840 0.90506 1.00612 1.01462 0.91278 0.91516 0.91282 0.77603 0.91279 0.91191 0.90214 0.89833 0.95969 0.95713 0.78180 0.93397 0.89489 0.90601 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.39 36.00 0.37 -0.14 16 2 C -0.19 -1.80 6.14 -104.93 -0.64 -2.44 16 3 C -0.02 -0.15 12.00 29.63 0.36 0.21 16 4 O -0.16 -1.77 8.27 5.00 0.04 -1.73 16 5 C -0.06 -0.86 6.95 -36.80 -0.26 -1.11 16 6 C 0.61 10.09 7.82 -12.86 -0.10 9.99 16 7 O -0.52 -10.35 17.12 5.19 0.09 -10.26 16 8 N -0.61 -9.33 3.33 -172.08 -0.57 -9.90 16 9 C 0.10 1.22 5.55 -3.06 -0.02 1.21 16 10 C -0.12 -1.46 6.43 -24.83 -0.16 -1.62 16 11 C -0.11 -1.66 3.11 -88.41 -0.27 -1.94 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.17 3.21 5.72 -4.04 -0.02 3.18 16 14 N -0.73 -18.53 5.45 -59.91 -0.33 -18.86 16 15 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 19 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 C 0.12 1.98 6.08 -2.54 -0.02 1.97 16 24 C -0.12 -1.49 10.57 -39.39 -0.42 -1.91 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.07 0.73 7.80 -51.92 -0.40 0.33 16 30 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 31 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 10.30 7.53 -40.82 -0.31 9.99 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 38 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 39 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -33.72 330.62 -7.22 -40.93 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.71 Total: 5.16 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.42 Total: -0.03 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.17 Total: -56.67 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.13 Total: -11.98 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.72 -7.22 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731669182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds