Wall clock time and date at job start Tue Mar 31 2020 01:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35130 * 126.44164 * 2 1 4 4 O 1.33934 * 108.76889 * 179.75406 * 3 2 1 5 5 C 1.34909 * 109.38340 * 0.40574 * 4 3 2 6 6 C 1.46652 * 125.98812 * 179.86223 * 5 4 3 7 7 O 1.21698 * 120.00060 * 179.68903 * 6 5 4 8 8 N 1.34780 * 120.00284 * 359.68601 * 6 5 4 9 9 C 1.47023 * 125.64409 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.27149 * 178.95789 * 9 8 6 11 11 C 1.55282 * 103.00430 * 337.88615 * 10 9 8 12 12 H 1.09001 * 110.95548 * 277.33125 * 11 10 9 13 13 C 1.52999 * 111.09626 * 153.45081 * 11 10 9 14 14 N 1.46510 * 109.46866 * 181.35720 * 13 11 10 15 15 C 1.36929 * 119.99938 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00267 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00319 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46487 * 60.00238 * 19 17 15 21 21 H 1.48495 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47060 * 300.00318 * 19 17 15 23 23 C 1.47419 * 125.65006 * 179.97438 * 8 6 5 24 24 C 1.36552 * 108.02482 * 359.59810 * 5 4 3 25 25 H 1.09007 * 109.47201 * 269.99823 * 1 2 3 26 26 H 1.09002 * 109.47259 * 29.99956 * 1 2 3 27 27 H 1.09003 * 109.47329 * 150.00055 * 1 2 3 28 28 H 1.08005 * 125.61463 * 359.96505 * 3 2 1 29 29 H 1.09009 * 109.87859 * 298.37607 * 9 8 6 30 30 H 1.09003 * 109.88678 * 59.38281 * 9 8 6 31 31 H 1.09006 * 110.71959 * 96.16400 * 10 9 8 32 32 H 1.08997 * 110.71908 * 219.26179 * 10 9 8 33 33 H 1.09001 * 109.47239 * 301.34870 * 13 11 10 34 34 H 1.08999 * 109.47584 * 61.35828 * 13 11 10 35 35 H 0.96993 * 119.99543 * 359.97438 * 14 13 11 36 36 H 0.97002 * 120.00127 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36926 * 322.95057 * 23 8 6 38 38 H 1.08995 * 110.36556 * 85.16341 * 23 8 6 39 39 H 1.07997 * 126.64686 * 180.26653 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0054 5 6 3.6261 -0.6680 0.0000 6 6 4.8379 -1.4939 0.0005 7 8 4.7472 -2.7075 0.0009 8 7 6.0522 -0.9090 0.0004 9 6 6.3055 0.5392 -0.0007 10 6 7.8358 0.7367 0.0264 11 6 8.3511 -0.6065 0.6108 12 1 8.2926 -0.6061 1.6992 13 6 9.7771 -0.9007 0.1406 14 7 10.2150 -2.1884 0.6852 15 6 11.4663 -2.6637 0.3969 16 1 12.1304 -2.0896 -0.2323 17 6 11.8814 -3.8834 0.9133 18 7 11.0720 -4.5834 1.6797 19 14 13.5883 -4.5323 0.5195 20 1 14.6084 -3.5700 1.0080 21 1 13.7857 -5.8438 1.1875 22 1 13.7279 -4.6985 -0.9495 23 6 7.3461 -1.6153 0.0013 24 6 2.3408 -1.1291 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9769 2.1146 -0.0005 29 1 5.8898 0.9876 -0.9032 30 1 5.8549 0.9952 0.8809 31 1 8.2227 0.8906 -0.9810 32 1 8.1055 1.5714 0.6733 33 1 9.7996 -0.9403 -0.9485 34 1 10.4446 -0.1128 0.4894 35 1 9.6184 -2.7041 1.2499 36 1 11.3622 -5.4356 2.0409 37 1 7.2882 -2.5125 0.6177 38 1 7.6381 -1.8735 -1.0165 39 1 2.0266 -2.1624 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731669182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:37 Heat of formation + Delta-G solvation = -32.530933 kcal Electronic energy + Delta-G solvation = -21135.742978 eV Core-core repulsion = 17851.288078 eV Total energy + Delta-G solvation = -3284.454900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.72490 -41.02800 -38.93586 -36.49289 -35.19663 -33.98557 -32.25537 -31.43440 -30.07834 -28.33457 -27.16513 -25.52550 -23.87797 -23.05006 -22.04830 -21.40330 -20.36042 -19.17349 -18.46222 -17.69543 -17.58807 -17.17321 -16.62843 -16.34441 -15.74355 -15.31388 -15.13924 -14.72109 -14.46807 -14.20788 -14.08861 -13.97375 -13.91804 -13.54615 -13.48435 -13.12995 -13.00615 -12.70664 -12.55452 -12.30718 -12.15891 -11.90166 -11.65738 -11.62706 -11.50304 -10.93155 -10.76301 -9.93551 -9.51765 -9.00524 -7.94505 -5.24194 -0.02859 1.32101 1.46929 1.50460 1.51323 1.56793 1.99837 2.03326 2.56315 3.31091 3.39624 3.58781 3.65273 3.80655 3.85382 4.04072 4.17062 4.25552 4.31218 4.41920 4.54534 4.63623 4.64605 4.78397 4.82822 4.87282 4.89055 4.99141 5.02720 5.04475 5.09271 5.14628 5.21046 5.39501 5.49918 5.51539 5.85781 6.26797 6.29632 6.80781 7.32891 8.09094 8.30688 9.29058 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039743 B = 0.003195 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.357759 B = 8762.896670 C = 9337.335744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.010 3.990 4 O -0.159 6.159 5 C -0.096 4.096 6 C 0.602 3.398 7 O -0.572 6.572 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.109 4.109 11 C -0.096 4.096 12 H 0.078 0.922 13 C 0.164 3.836 14 N -0.749 5.749 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.976 3.024 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.277 1.277 23 C 0.119 3.881 24 C -0.126 4.126 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.258 0.742 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.028 0.972 34 H 0.038 0.962 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 19.118 -4.388 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.059 4.059 4 O -0.054 6.054 5 C -0.148 4.148 6 C 0.392 3.608 7 O -0.454 6.454 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.116 4.116 12 H 0.097 0.903 13 C 0.038 3.962 14 N -0.392 5.392 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.805 3.195 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.204 1.204 23 C -0.003 4.003 24 C -0.147 4.147 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.274 0.726 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.193 18.666 -4.480 27.861 hybrid contribution 0.674 -1.541 0.221 1.696 sum -19.518 17.125 -4.258 26.313 Atomic orbital electron populations 1.20259 0.86440 1.03921 1.03148 1.20838 0.99219 0.91487 1.09286 1.25215 0.78740 1.01711 1.00260 1.84129 1.30575 1.20170 1.70520 1.21442 0.94840 0.81577 1.16950 1.16632 0.81379 0.85910 0.76831 1.90869 1.86329 1.14380 1.53865 1.48535 1.04716 1.09862 1.70929 1.22334 0.97464 0.78369 1.03619 1.22702 0.92179 0.96336 1.03523 1.22439 0.93321 0.95462 1.00364 0.90312 1.20767 0.92037 0.87305 0.96117 1.42635 1.15284 1.21060 1.60226 1.19638 0.92275 1.01577 1.24161 0.90148 1.25640 1.02336 0.98265 1.00951 1.69837 1.37769 1.15190 1.39573 0.85170 0.79711 0.76989 0.77643 1.20003 1.22452 1.20359 1.22157 0.81662 0.95769 1.00717 1.22079 0.90878 1.01455 1.00264 0.90522 0.89071 0.91568 0.72631 0.89293 0.89699 0.88938 0.86827 0.95456 0.94413 0.79696 0.94099 0.93434 0.91744 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 71.23 0.74 -0.02 16 2 C -0.21 -3.31 6.14 -20.06 -0.12 -3.43 16 3 C 0.01 0.13 12.00 67.10 0.81 0.93 16 4 O -0.16 -3.13 8.27 -5.02 -0.04 -3.17 16 5 C -0.10 -2.60 6.95 24.07 0.17 -2.44 16 6 C 0.60 20.90 7.82 86.44 0.68 21.58 16 7 O -0.57 -24.81 17.12 -4.34 -0.07 -24.89 16 8 N -0.61 -18.99 3.33 -816.55 -2.72 -21.71 16 9 C 0.10 2.20 5.55 86.73 0.48 2.68 16 10 C -0.11 -2.23 6.43 31.83 0.20 -2.03 16 11 C -0.10 -3.00 3.11 -9.36 -0.03 -3.03 16 12 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 13 C 0.16 6.29 5.72 86.38 0.49 6.78 16 14 N -0.75 -38.67 5.45 -343.44 -1.87 -40.54 16 15 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 18 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 19 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C 0.12 4.30 6.08 86.85 0.53 4.83 16 24 C -0.13 -3.02 10.57 22.39 0.24 -2.78 16 25 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.26 0.43 8.06 -2.91 -0.02 0.40 16 29 H 0.09 1.60 7.80 -2.38 -0.02 1.58 16 30 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 31 H 0.09 1.71 8.04 -2.38 -0.02 1.69 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.37 20.84 7.53 -92.71 -0.70 20.14 16 36 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.05 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.06 2.42 8.00 -2.39 -0.02 2.40 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -77.43 330.62 3.44 -73.98 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.35 Total: 22.92 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.49 Total: 5.82 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.31 Total: -123.75 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.12 Total: -28.06 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.43 3.44 -73.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731669182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.453 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds