Wall clock time and date at job start Tue Mar 31 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35130 * 126.44303 * 2 1 4 4 O 1.33923 * 108.77124 * 180.02562 * 3 2 1 5 5 C 1.34913 * 109.38499 * 359.97438 * 4 3 2 6 6 C 1.46652 * 125.99053 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00315 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99960 * 0.02562 * 6 5 4 9 9 C 1.47019 * 125.64508 * 0.02617 * 8 6 5 10 10 C 1.54325 * 107.26681 * 181.01366 * 9 8 6 11 11 C 1.55150 * 102.94486 * 22.19482 * 10 9 8 12 12 H 1.09002 * 111.00629 * 82.60681 * 11 10 9 13 13 C 1.53002 * 111.00522 * 206.42157 * 11 10 9 14 14 N 1.46506 * 109.47035 * 184.99752 * 13 11 10 15 15 C 1.36938 * 119.99589 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00325 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99821 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99700 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47420 * 89.99777 * 19 17 15 21 21 H 1.48505 * 109.47105 * 209.99801 * 19 17 15 22 22 H 1.48504 * 109.46998 * 329.99267 * 19 17 15 23 23 C 1.47419 * 125.64924 * 179.97438 * 8 6 5 24 24 C 1.36544 * 108.02496 * 0.22924 * 5 4 3 25 25 H 1.08996 * 109.47131 * 89.98316 * 1 2 3 26 26 H 1.09007 * 109.47288 * 209.97554 * 1 2 3 27 27 H 1.09000 * 109.47725 * 329.97822 * 1 2 3 28 28 H 1.08007 * 125.61079 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.88577 * 61.60189 * 9 8 6 30 30 H 1.08999 * 109.88661 * 300.42656 * 9 8 6 31 31 H 1.09001 * 110.72359 * 263.82912 * 10 9 8 32 32 H 1.09007 * 110.87263 * 140.63248 * 10 9 8 33 33 H 1.09004 * 109.46930 * 64.99982 * 13 11 10 34 34 H 1.09000 * 109.47312 * 304.99926 * 13 11 10 35 35 H 0.96999 * 120.00080 * 0.02562 * 14 13 11 36 36 H 0.97000 * 119.99481 * 179.97438 * 18 17 15 37 37 H 1.09005 * 110.36909 * 37.07774 * 23 8 6 38 38 H 1.09000 * 110.36656 * 274.75899 * 23 8 6 39 39 H 1.07993 * 126.65300 * 179.77184 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6260 -0.6680 -0.0004 6 6 4.8378 -1.4940 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9090 -0.0021 9 6 6.3054 0.5392 -0.0014 10 6 7.8358 0.7366 -0.0288 11 6 8.3489 -0.6054 -0.6144 12 1 8.2890 -0.6051 -1.7027 13 6 9.7760 -0.8979 -0.1467 14 7 10.2695 -2.1068 -0.8111 15 6 11.5324 -2.5659 -0.5473 16 1 12.1644 -2.0371 0.1508 17 6 12.0002 -3.7110 -1.1772 18 7 11.2297 -4.3558 -2.0276 19 14 13.7226 -4.3378 -0.8169 20 1 13.6757 -5.2853 0.3254 21 1 14.2571 -5.0332 -2.0152 22 1 14.6044 -3.1930 -0.4747 23 6 7.3461 -1.6153 -0.0026 24 6 2.3408 -1.1292 -0.0049 25 1 -0.3633 0.0003 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9769 2.1146 0.0004 29 1 5.8899 0.9879 0.9009 30 1 5.8572 0.9944 -0.8846 31 1 8.2228 0.8909 0.9785 32 1 8.1084 1.5695 -0.6769 33 1 9.7808 -1.0490 0.9329 34 1 10.4207 -0.0559 -0.3986 35 1 9.7020 -2.5815 -1.4383 36 1 11.5568 -5.1557 -2.4680 37 1 7.2882 -2.5128 -0.6185 38 1 7.6389 -1.8712 1.0156 39 1 2.0266 -2.1624 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731669183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:45 Heat of formation + Delta-G solvation = -9.680245 kcal Electronic energy + Delta-G solvation = -21108.150613 eV Core-core repulsion = 17824.686593 eV Total energy + Delta-G solvation = -3283.464020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.90137 -39.80551 -37.62604 -34.77985 -34.37488 -32.31696 -30.82372 -30.32128 -28.78679 -27.56918 -25.70011 -23.95494 -22.39176 -21.92305 -21.20945 -20.08020 -19.33167 -17.64147 -17.01167 -16.71950 -16.50605 -16.02139 -15.32473 -14.65111 -14.41216 -13.87253 -13.67816 -13.48828 -13.40868 -13.28688 -13.15946 -12.94671 -12.69804 -12.58059 -12.19553 -11.96895 -11.75001 -11.27390 -10.85631 -10.65146 -10.61210 -10.42414 -10.23671 -10.00823 -9.93328 -9.67121 -8.89578 -8.86619 -8.54901 -6.91737 -5.74410 -3.03938 0.92387 2.08059 2.49786 3.04567 3.13860 3.45591 3.50238 3.52230 4.28996 4.51518 4.58595 4.65825 4.68041 4.81878 4.99241 5.07808 5.29086 5.33167 5.38020 5.47155 5.53987 5.60037 5.64287 5.67985 5.74680 5.87984 5.96145 6.02089 6.08329 6.16059 6.21906 6.36695 6.38400 6.67732 6.71331 6.82029 7.45094 7.71266 8.02723 8.43799 9.55018 10.11817 10.46172 11.48284 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.003149 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.705929 B = 8890.418352 C = 9423.855787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.194 4.194 3 C -0.017 4.017 4 O -0.158 6.158 5 C -0.063 4.063 6 C 0.610 3.390 7 O -0.518 6.518 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.125 4.125 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.115 3.885 24 C -0.123 4.123 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.207 0.793 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 14.945 4.508 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.195 4.195 3 C -0.087 4.087 4 O -0.053 6.053 5 C -0.115 4.115 6 C 0.398 3.602 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.125 4.125 12 H 0.105 0.895 13 C 0.037 3.963 14 N -0.378 5.378 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.006 4.006 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.224 0.776 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.736 14.419 4.574 24.866 hybrid contribution 0.547 -0.513 -0.063 0.753 sum -19.188 13.906 4.511 24.123 Atomic orbital electron populations 1.20176 0.88687 1.02801 1.02314 1.20482 0.97666 0.92436 1.08947 1.24188 0.80245 0.99970 1.04297 1.84154 1.28957 1.21768 1.70419 1.22082 0.96029 0.80459 1.12968 1.16180 0.80295 0.86028 0.77721 1.90916 1.85379 1.12033 1.51312 1.48459 1.05724 1.08371 1.71542 1.22095 0.97210 0.80683 1.01924 1.22665 0.92781 0.98393 1.02491 1.22608 0.95826 0.93187 1.00891 0.89512 1.20590 0.89537 0.90650 0.95511 1.42379 1.15657 1.27665 1.52085 1.19208 0.90891 1.06570 1.20606 0.91144 1.24761 0.98407 0.98242 0.99549 1.69667 1.36211 1.20303 1.31831 0.86182 0.84158 0.78632 0.77157 1.21702 1.21784 1.20779 1.22435 0.79827 0.96305 1.02007 1.21838 0.90507 1.00611 1.01444 0.91279 0.91281 0.91511 0.77594 0.91246 0.91175 0.90222 0.89805 0.95956 0.95704 0.78194 0.93463 0.89501 0.90665 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 36.00 0.37 -0.14 16 2 C -0.19 -1.78 6.14 -104.93 -0.64 -2.43 16 3 C -0.02 -0.14 12.00 29.63 0.36 0.21 16 4 O -0.16 -1.75 8.28 5.02 0.04 -1.71 16 5 C -0.06 -0.85 6.95 -36.80 -0.26 -1.11 16 6 C 0.61 10.01 7.82 -12.86 -0.10 9.91 16 7 O -0.52 -10.25 17.12 5.19 0.09 -10.17 16 8 N -0.61 -9.24 3.33 -172.07 -0.57 -9.81 16 9 C 0.10 1.22 5.54 -3.07 -0.02 1.20 16 10 C -0.12 -1.46 6.42 -24.90 -0.16 -1.62 16 11 C -0.11 -1.66 3.05 -88.47 -0.27 -1.93 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.17 3.20 5.72 -4.04 -0.02 3.18 16 14 N -0.73 -18.52 5.55 -59.90 -0.33 -18.85 16 15 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.12 1.95 6.32 -2.53 -0.02 1.93 16 24 C -0.12 -1.48 10.57 -39.39 -0.42 -1.89 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.21 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.44 7.96 -51.93 -0.41 0.02 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.68 8.04 -51.93 -0.42 1.27 16 38 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 39 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -33.70 330.81 -7.21 -40.91 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.70 Total: 5.04 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.42 Total: -0.11 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.18 Total: -56.54 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.13 Total: -11.88 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.70 -7.21 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731669183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.226 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds