Wall clock time and date at job start Tue Mar 31 2020 01:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35130 * 126.44303 * 2 1 4 4 O 1.33923 * 108.77124 * 180.02562 * 3 2 1 5 5 C 1.34913 * 109.38499 * 359.97438 * 4 3 2 6 6 C 1.46652 * 125.99053 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00315 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99960 * 0.02562 * 6 5 4 9 9 C 1.47019 * 125.64508 * 0.02617 * 8 6 5 10 10 C 1.54325 * 107.26681 * 181.01366 * 9 8 6 11 11 C 1.55150 * 102.94486 * 22.19482 * 10 9 8 12 12 H 1.09002 * 111.00629 * 82.60681 * 11 10 9 13 13 C 1.53002 * 111.00522 * 206.42157 * 11 10 9 14 14 N 1.46506 * 109.47035 * 184.99752 * 13 11 10 15 15 C 1.36938 * 119.99589 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00325 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99821 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99700 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47420 * 89.99777 * 19 17 15 21 21 H 1.48505 * 109.47105 * 209.99801 * 19 17 15 22 22 H 1.48504 * 109.46998 * 329.99267 * 19 17 15 23 23 C 1.47419 * 125.64924 * 179.97438 * 8 6 5 24 24 C 1.36544 * 108.02496 * 0.22924 * 5 4 3 25 25 H 1.08996 * 109.47131 * 89.98316 * 1 2 3 26 26 H 1.09007 * 109.47288 * 209.97554 * 1 2 3 27 27 H 1.09000 * 109.47725 * 329.97822 * 1 2 3 28 28 H 1.08007 * 125.61079 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.88577 * 61.60189 * 9 8 6 30 30 H 1.08999 * 109.88661 * 300.42656 * 9 8 6 31 31 H 1.09001 * 110.72359 * 263.82912 * 10 9 8 32 32 H 1.09007 * 110.87263 * 140.63248 * 10 9 8 33 33 H 1.09004 * 109.46930 * 64.99982 * 13 11 10 34 34 H 1.09000 * 109.47312 * 304.99926 * 13 11 10 35 35 H 0.96999 * 120.00080 * 0.02562 * 14 13 11 36 36 H 0.97000 * 119.99481 * 179.97438 * 18 17 15 37 37 H 1.09005 * 110.36909 * 37.07774 * 23 8 6 38 38 H 1.09000 * 110.36656 * 274.75899 * 23 8 6 39 39 H 1.07993 * 126.65300 * 179.77184 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6260 -0.6680 -0.0004 6 6 4.8378 -1.4940 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9090 -0.0021 9 6 6.3054 0.5392 -0.0014 10 6 7.8358 0.7366 -0.0288 11 6 8.3489 -0.6054 -0.6144 12 1 8.2890 -0.6051 -1.7027 13 6 9.7760 -0.8979 -0.1467 14 7 10.2695 -2.1068 -0.8111 15 6 11.5324 -2.5659 -0.5473 16 1 12.1644 -2.0371 0.1508 17 6 12.0002 -3.7110 -1.1772 18 7 11.2297 -4.3558 -2.0276 19 14 13.7226 -4.3378 -0.8169 20 1 13.6757 -5.2853 0.3254 21 1 14.2571 -5.0332 -2.0152 22 1 14.6044 -3.1930 -0.4747 23 6 7.3461 -1.6153 -0.0026 24 6 2.3408 -1.1292 -0.0049 25 1 -0.3633 0.0003 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 1.9769 2.1146 0.0004 29 1 5.8899 0.9879 0.9009 30 1 5.8572 0.9944 -0.8846 31 1 8.2228 0.8909 0.9785 32 1 8.1084 1.5695 -0.6769 33 1 9.7808 -1.0490 0.9329 34 1 10.4207 -0.0559 -0.3986 35 1 9.7020 -2.5815 -1.4383 36 1 11.5568 -5.1557 -2.4680 37 1 7.2882 -2.5128 -0.6185 38 1 7.6389 -1.8712 1.0156 39 1 2.0266 -2.1624 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731669183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:44 Heat of formation + Delta-G solvation = -32.549444 kcal Electronic energy + Delta-G solvation = -21109.142296 eV Core-core repulsion = 17824.686593 eV Total energy + Delta-G solvation = -3284.455702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72520 -41.03043 -38.93696 -36.49589 -35.19680 -33.98746 -32.25875 -31.43287 -30.09333 -28.33218 -27.16289 -25.51449 -23.85209 -23.06434 -22.04998 -21.44136 -20.35417 -19.16968 -18.46102 -17.69681 -17.58842 -17.18085 -16.61838 -16.34717 -15.72800 -15.32395 -15.12432 -14.71783 -14.46609 -14.21352 -14.09264 -13.97840 -13.92077 -13.55221 -13.50115 -13.11200 -13.01637 -12.76156 -12.55376 -12.25176 -12.14220 -11.90193 -11.66299 -11.63217 -11.50151 -10.94330 -10.76247 -9.93636 -9.51770 -9.00479 -7.94866 -5.24349 -0.02807 1.32104 1.47036 1.49435 1.51246 1.57769 1.99859 2.03295 2.56191 3.30970 3.39770 3.58548 3.66080 3.80700 3.84555 4.04172 4.16445 4.25213 4.31131 4.42257 4.54553 4.63880 4.64899 4.79025 4.81984 4.87113 4.89035 4.98798 5.02607 5.04191 5.09268 5.14189 5.21736 5.39209 5.50353 5.51538 5.85846 6.26803 6.29369 6.80643 7.32806 8.08929 8.30515 9.28938 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.003149 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.705929 B = 8890.418352 C = 9423.855787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.010 3.990 4 O -0.159 6.159 5 C -0.097 4.097 6 C 0.603 3.397 7 O -0.572 6.572 8 N -0.609 5.609 9 C 0.104 3.896 10 C -0.110 4.110 11 C -0.097 4.097 12 H 0.077 0.923 13 C 0.164 3.836 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.081 0.919 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.976 3.024 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.265 1.265 23 C 0.118 3.882 24 C -0.126 4.126 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.258 0.742 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.027 0.973 34 H 0.038 0.962 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.984 18.503 5.394 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.059 4.059 4 O -0.054 6.054 5 C -0.148 4.148 6 C 0.393 3.607 7 O -0.454 6.454 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.116 4.116 12 H 0.096 0.904 13 C 0.038 3.962 14 N -0.392 5.392 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.805 3.195 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.190 1.190 23 C -0.004 4.004 24 C -0.147 4.147 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.273 0.727 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.635 18.060 5.493 27.967 hybrid contribution 0.696 -1.507 -0.301 1.687 sum -19.940 16.553 5.192 26.430 Atomic orbital electron populations 1.20257 0.86448 1.03924 1.03142 1.20840 0.99216 0.91495 1.09289 1.25211 0.78752 1.01713 1.00267 1.84128 1.30566 1.20189 1.70521 1.21448 0.94863 0.81573 1.16949 1.16623 0.81363 0.85905 0.76817 1.90866 1.86327 1.14348 1.53878 1.48534 1.04732 1.09846 1.70936 1.22322 0.97431 0.78398 1.03595 1.22683 0.92232 0.96340 1.03528 1.22425 0.93363 0.95507 1.00326 0.90444 1.20769 0.91632 0.88655 0.95166 1.42650 1.14920 1.29361 1.52262 1.19675 0.91913 1.06270 1.19655 0.90151 1.25636 1.02481 0.99004 1.00102 1.69843 1.38155 1.20824 1.33531 0.85103 0.79737 0.78226 0.76477 1.21613 1.22342 1.18965 1.22207 0.81638 0.95766 1.00776 1.22078 0.90874 1.01454 1.00255 0.90540 0.91549 0.89081 0.72656 0.89213 0.89788 0.88832 0.86992 0.95510 0.94372 0.79699 0.94104 0.93372 0.91467 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.23 0.74 -0.01 16 2 C -0.21 -3.29 6.14 -20.06 -0.12 -3.41 16 3 C 0.01 0.12 12.00 67.10 0.81 0.93 16 4 O -0.16 -3.11 8.28 -4.96 -0.04 -3.16 16 5 C -0.10 -2.59 6.95 24.07 0.17 -2.42 16 6 C 0.60 20.68 7.82 86.44 0.68 21.36 16 7 O -0.57 -24.49 17.12 -4.34 -0.07 -24.56 16 8 N -0.61 -18.77 3.33 -816.52 -2.72 -21.49 16 9 C 0.10 2.20 5.54 86.73 0.48 2.68 16 10 C -0.11 -2.24 6.42 31.78 0.20 -2.04 16 11 C -0.10 -3.01 3.05 -9.40 -0.03 -3.04 16 12 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 13 C 0.16 6.28 5.72 86.38 0.49 6.77 16 14 N -0.75 -38.57 5.55 -343.43 -1.91 -40.48 16 15 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 18 N -0.97 -61.57 13.06 21.65 0.28 -61.29 16 19 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C 0.12 4.19 6.32 86.86 0.55 4.74 16 24 C -0.13 -2.99 10.57 22.39 0.24 -2.75 16 25 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 29 H 0.09 1.59 7.79 -2.39 -0.02 1.57 16 30 H 0.08 1.59 7.68 -2.39 -0.02 1.57 16 31 H 0.09 1.71 8.04 -2.39 -0.02 1.69 16 32 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.03 1.02 7.96 -2.38 -0.02 1.00 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 36 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.05 2.05 8.04 -2.38 -0.02 2.03 16 38 H 0.07 2.44 7.91 -2.39 -0.02 2.42 16 39 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -77.09 330.81 3.42 -73.67 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.34 Total: 22.63 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.51 Total: 5.66 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -4.34 Total: -123.26 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.12 Total: -27.72 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.09 3.42 -73.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731669183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.117 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds