Wall clock time and date at job start Tue Mar 31 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 125.61333 * 2 1 4 4 C 1.40368 * 107.11208 * 180.02562 * 3 2 1 5 5 C 1.36537 * 106.70784 * 0.02562 * 4 3 2 6 6 C 1.46666 * 125.98916 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99682 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00050 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99635 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47212 * 325.00311 * 9 8 6 11 11 C 1.53005 * 109.46831 * 205.00143 * 9 8 6 12 12 N 1.46502 * 109.47209 * 55.00453 * 11 9 8 13 13 C 1.36934 * 119.99993 * 179.97438 * 12 11 9 14 14 H 1.07994 * 119.99681 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99749 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99862 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00295 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46946 * 89.99966 * 17 15 13 19 19 H 1.48501 * 109.47356 * 210.00150 * 17 15 13 20 20 H 1.48500 * 109.47418 * 330.00487 * 17 15 13 21 21 C 1.53002 * 109.47035 * 85.00546 * 9 8 6 22 22 C 1.53001 * 117.49835 * 8.74486 * 21 9 8 23 23 C 1.52997 * 117.49649 * 300.08577 * 21 9 8 24 24 O 1.33925 * 125.61798 * 180.32203 * 2 1 3 25 25 H 1.08993 * 109.47378 * 90.00044 * 1 2 3 26 26 H 1.09000 * 109.47225 * 210.00177 * 1 2 3 27 27 H 1.08998 * 109.47553 * 329.99750 * 1 2 3 28 28 H 1.07994 * 126.44576 * 0.03794 * 3 2 1 29 29 H 1.07999 * 126.64341 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00547 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.46692 * 175.00236 * 11 9 8 32 32 H 1.08993 * 109.47016 * 295.00161 * 11 9 8 33 33 H 0.97000 * 119.99673 * 359.97438 * 12 11 9 34 34 H 0.97005 * 119.99821 * 180.02562 * 16 15 13 35 35 H 1.08996 * 115.54962 * 154.41232 * 21 9 8 36 36 H 1.09002 * 117.49771 * 0.02562 * 22 21 9 37 37 H 1.08993 * 117.50233 * 145.02370 * 22 21 9 38 38 H 1.09002 * 117.49986 * 214.98058 * 23 21 9 39 39 H 1.09000 * 117.49906 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5822 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9454 -0.0032 9 6 5.7169 -3.8429 -0.0052 10 1 6.5190 -3.3999 -0.5955 11 6 5.3182 -5.1884 -0.6149 12 7 4.7454 -4.9710 -1.9456 13 6 4.3143 -6.0378 -2.6881 14 1 4.3970 -7.0394 -2.2928 15 6 3.7722 -5.8318 -3.9492 16 7 3.3574 -6.8571 -4.6627 17 14 3.6299 -4.0994 -4.6332 18 1 4.8666 -3.7597 -5.3818 19 1 2.4614 -4.0221 -5.5464 20 1 3.4486 -3.1390 -3.5151 21 6 6.1989 -4.0567 1.4311 22 6 5.3204 -3.5125 2.5594 23 6 6.6434 -2.8222 2.2181 24 8 2.2869 -1.0887 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.9612 2.1260 0.0006 29 1 4.5112 1.2704 -0.0011 30 1 3.6610 -3.3123 -0.0029 31 1 6.1991 -5.8249 -0.6980 32 1 4.5794 -5.6722 0.0241 33 1 4.6715 -4.0714 -2.3008 34 1 2.9788 -6.7132 -5.5442 35 1 6.7326 -4.9893 1.6140 36 1 4.3989 -3.0026 2.2785 37 1 5.2766 -4.0868 3.4848 38 1 7.4694 -2.9427 2.9191 39 1 6.5920 -1.8578 1.7128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733163750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:42 Heat of formation + Delta-G solvation = 21.392983 kcal Electronic energy + Delta-G solvation = -21937.669496 eV Core-core repulsion = 18655.552913 eV Total energy + Delta-G solvation = -3282.116583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.58 seconds Orbital eigenvalues (eV) -42.77528 -39.99767 -37.24606 -35.10550 -33.71806 -33.13846 -32.12448 -31.36157 -28.94376 -27.08356 -24.08181 -22.68673 -22.27650 -21.69746 -21.32707 -20.38114 -19.79248 -18.44808 -17.57714 -16.64741 -16.05896 -15.92990 -15.51182 -14.77944 -14.35856 -14.07178 -13.76115 -13.44932 -13.38607 -13.27961 -13.06857 -13.05766 -12.79195 -12.26588 -12.10627 -11.88689 -11.58555 -11.36392 -11.07302 -10.88926 -10.38055 -10.20743 -10.11907 -10.02552 -9.75051 -9.61000 -8.99214 -8.91381 -8.54485 -7.29311 -5.80522 -3.16821 1.00599 2.22366 2.54887 3.19964 3.27202 3.35772 3.40372 3.43904 3.97309 4.45894 4.56394 4.72271 4.80090 4.82227 5.07609 5.11484 5.12630 5.19597 5.37597 5.41535 5.48314 5.53011 5.57313 5.72373 5.76120 5.80844 5.82458 5.88081 6.04527 6.19650 6.26211 6.33659 6.42091 6.54716 6.68492 6.83033 7.59214 7.94306 8.16938 8.38011 9.16328 9.88775 10.07726 11.37545 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.007060 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.088649 B = 3964.858476 C = 5577.187253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.226 4.226 4 C -0.121 4.121 5 C -0.077 4.077 6 C 0.602 3.398 7 O -0.522 6.522 8 N -0.701 5.701 9 C 0.163 3.837 10 H 0.095 0.905 11 C 0.153 3.847 12 N -0.756 5.756 13 C -0.246 4.246 14 H 0.092 0.908 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.160 4.160 22 C -0.177 4.177 23 C -0.187 4.187 24 O -0.158 6.158 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.410 0.590 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 14.514 14.243 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.246 4.246 4 C -0.141 4.141 5 C -0.129 4.129 6 C 0.388 3.612 7 O -0.401 6.401 8 N -0.351 5.351 9 C 0.059 3.941 10 H 0.113 0.887 11 C 0.025 3.975 12 N -0.402 5.402 13 C -0.375 4.375 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.579 5.579 17 Si 0.712 3.288 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.180 4.180 22 C -0.215 4.215 23 C -0.223 4.223 24 O -0.054 6.054 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.246 0.754 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.962 14.238 14.158 20.174 hybrid contribution -0.545 1.155 -0.663 1.439 sum -2.507 15.393 13.495 20.623 Atomic orbital electron populations 1.20421 0.84614 1.04409 1.04126 1.22841 0.94368 0.84143 1.02054 1.21556 0.92359 0.99685 1.10953 1.21907 0.98563 0.92901 1.00769 1.22131 0.81988 0.94700 1.14064 1.16562 0.86002 0.81823 0.76795 1.90797 1.21848 1.76237 1.51250 1.45996 1.11328 1.05008 1.72739 1.20930 0.87971 0.91004 0.94238 0.88701 1.20904 0.97470 0.92171 0.86955 1.42705 1.75736 1.06151 1.15581 1.19030 1.33282 0.88283 0.96950 0.89036 1.24644 1.00789 0.96522 0.96856 1.69699 1.47251 1.28645 1.12344 0.86599 0.77598 0.85719 0.78907 1.21009 1.21658 1.20458 1.22668 1.04370 0.98763 0.92198 1.22905 0.95310 1.04383 0.98869 1.23341 0.97391 0.98458 1.03140 1.84045 1.15990 1.34893 1.70493 0.89475 0.90026 0.89020 0.82759 0.82311 0.75374 0.93617 0.94629 0.80460 0.93013 0.86786 0.89150 0.89237 0.89465 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.41 36.00 0.37 -0.22 16 2 C 0.02 0.22 7.31 -35.42 -0.26 -0.04 16 3 C -0.23 -2.53 10.77 -39.89 -0.43 -2.96 16 4 C -0.12 -1.61 10.62 -39.39 -0.42 -2.03 16 5 C -0.08 -1.18 7.13 -36.80 -0.26 -1.44 16 6 C 0.60 10.00 6.62 -12.86 -0.09 9.92 16 7 O -0.52 -9.51 13.89 5.20 0.07 -9.43 16 8 N -0.70 -11.28 3.05 -55.11 -0.17 -11.45 16 9 C 0.16 2.64 2.59 -67.92 -0.18 2.46 16 10 H 0.10 1.68 7.58 -51.93 -0.39 1.29 16 11 C 0.15 2.85 5.80 -4.04 -0.02 2.82 16 12 N -0.76 -17.76 5.24 -59.91 -0.31 -18.08 16 13 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 14 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 16 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 17 Si 0.88 22.58 27.73 -169.99 -4.71 17.87 16 18 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 21 C -0.16 -2.19 5.71 -90.62 -0.52 -2.71 16 22 C -0.18 -2.26 9.74 -26.69 -0.26 -2.52 16 23 C -0.19 -2.50 9.82 -26.69 -0.26 -2.76 16 24 O -0.16 -2.31 10.40 5.02 0.05 -2.26 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.41 6.54 8.36 -40.82 -0.34 6.19 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.36 8.60 5.20 -40.82 -0.21 8.39 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 36 H 0.09 1.21 6.67 -51.93 -0.35 0.86 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.11 1.77 5.01 -51.93 -0.26 1.51 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -32.88 327.92 -7.30 -40.18 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.37 Total: 13.05 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.57 Total: -6.39 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.29 Total: -57.97 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.12 Total: -11.69 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.88 -7.30 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733163750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.569 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.58 seconds