Wall clock time and date at job start Tue Mar 31 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 125.61333 * 2 1 4 4 C 1.40368 * 107.11208 * 180.02562 * 3 2 1 5 5 C 1.36537 * 106.70784 * 0.02562 * 4 3 2 6 6 C 1.46666 * 125.98916 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99682 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00050 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99635 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47212 * 325.00311 * 9 8 6 11 11 C 1.53005 * 109.46831 * 205.00143 * 9 8 6 12 12 N 1.46502 * 109.47209 * 55.00453 * 11 9 8 13 13 C 1.36934 * 119.99993 * 179.97438 * 12 11 9 14 14 H 1.07994 * 119.99681 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99749 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99862 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00295 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46946 * 89.99966 * 17 15 13 19 19 H 1.48501 * 109.47356 * 210.00150 * 17 15 13 20 20 H 1.48500 * 109.47418 * 330.00487 * 17 15 13 21 21 C 1.53002 * 109.47035 * 85.00546 * 9 8 6 22 22 C 1.53001 * 117.49835 * 8.74486 * 21 9 8 23 23 C 1.52997 * 117.49649 * 300.08577 * 21 9 8 24 24 O 1.33925 * 125.61798 * 180.32203 * 2 1 3 25 25 H 1.08993 * 109.47378 * 90.00044 * 1 2 3 26 26 H 1.09000 * 109.47225 * 210.00177 * 1 2 3 27 27 H 1.08998 * 109.47553 * 329.99750 * 1 2 3 28 28 H 1.07994 * 126.44576 * 0.03794 * 3 2 1 29 29 H 1.07999 * 126.64341 * 179.97438 * 4 3 2 30 30 H 0.97000 * 120.00547 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.46692 * 175.00236 * 11 9 8 32 32 H 1.08993 * 109.47016 * 295.00161 * 11 9 8 33 33 H 0.97000 * 119.99673 * 359.97438 * 12 11 9 34 34 H 0.97005 * 119.99821 * 180.02562 * 16 15 13 35 35 H 1.08996 * 115.54962 * 154.41232 * 21 9 8 36 36 H 1.09002 * 117.49771 * 0.02562 * 22 21 9 37 37 H 1.08993 * 117.50233 * 145.02370 * 22 21 9 38 38 H 1.09002 * 117.49986 * 214.98058 * 23 21 9 39 39 H 1.09000 * 117.49906 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5822 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9454 -0.0032 9 6 5.7169 -3.8429 -0.0052 10 1 6.5190 -3.3999 -0.5955 11 6 5.3182 -5.1884 -0.6149 12 7 4.7454 -4.9710 -1.9456 13 6 4.3143 -6.0378 -2.6881 14 1 4.3970 -7.0394 -2.2928 15 6 3.7722 -5.8318 -3.9492 16 7 3.3574 -6.8571 -4.6627 17 14 3.6299 -4.0994 -4.6332 18 1 4.8666 -3.7597 -5.3818 19 1 2.4614 -4.0221 -5.5464 20 1 3.4486 -3.1390 -3.5151 21 6 6.1989 -4.0567 1.4311 22 6 5.3204 -3.5125 2.5594 23 6 6.6434 -2.8222 2.2181 24 8 2.2869 -1.0887 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.9612 2.1260 0.0006 29 1 4.5112 1.2704 -0.0011 30 1 3.6610 -3.3123 -0.0029 31 1 6.1991 -5.8249 -0.6980 32 1 4.5794 -5.6722 0.0241 33 1 4.6715 -4.0714 -2.3008 34 1 2.9788 -6.7132 -5.5442 35 1 6.7326 -4.9893 1.6140 36 1 4.3989 -3.0026 2.2785 37 1 5.2766 -4.0868 3.4848 38 1 7.4694 -2.9427 2.9191 39 1 6.5920 -1.8578 1.7128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733163750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:40 Heat of formation + Delta-G solvation = -0.001387 kcal Electronic energy + Delta-G solvation = -21938.597225 eV Core-core repulsion = 18655.552913 eV Total energy + Delta-G solvation = -3283.044313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.75679 -41.24250 -38.49902 -36.73688 -35.05705 -34.26178 -33.44475 -32.87605 -30.47045 -28.08176 -25.84267 -23.81893 -23.43662 -22.89593 -22.66753 -21.45331 -21.00365 -20.01870 -19.19400 -17.75884 -17.34864 -17.08527 -16.69113 -16.44996 -15.86535 -15.34978 -15.20506 -14.86224 -14.68906 -14.32353 -14.06703 -14.00739 -13.84489 -13.75206 -13.48625 -13.03982 -12.87385 -12.79580 -12.75205 -12.34995 -12.17014 -11.87530 -11.57635 -11.18033 -11.07674 -11.07288 -10.87142 -10.21106 -9.51301 -9.36077 -8.06998 -5.40088 -0.05478 1.30523 1.31143 1.33421 1.39219 1.55859 2.02527 2.10640 2.41577 2.89116 3.25316 3.39327 3.56898 3.80838 3.88053 3.91876 4.00253 4.03704 4.30683 4.39741 4.49579 4.51732 4.58390 4.68586 4.69689 4.78786 4.81729 4.88969 5.01923 5.04334 5.09723 5.21025 5.33786 5.38578 5.43723 5.72318 5.82764 6.16690 6.35214 6.92303 7.02068 7.77314 7.95139 9.14262 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.007060 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.088649 B = 3964.858476 C = 5577.187253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.227 4.227 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.601 3.399 7 O -0.546 6.546 8 N -0.701 5.701 9 C 0.173 3.827 10 H 0.078 0.922 11 C 0.153 3.847 12 N -0.758 5.758 13 C -0.230 4.230 14 H 0.067 0.933 15 C -0.055 4.055 16 N -0.978 5.978 17 Si 0.945 3.055 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.264 1.264 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.186 4.186 24 O -0.177 6.177 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.188 0.812 29 H 0.166 0.834 30 H 0.410 0.590 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.362 0.638 34 H 0.258 0.742 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 16.517 15.634 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.246 4.246 4 C -0.138 4.138 5 C -0.167 4.167 6 C 0.389 3.611 7 O -0.428 6.428 8 N -0.350 5.350 9 C 0.068 3.932 10 H 0.096 0.904 11 C 0.027 3.973 12 N -0.404 5.404 13 C -0.361 4.361 14 H 0.084 0.916 15 C -0.247 4.247 16 N -0.628 5.628 17 Si 0.774 3.226 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.184 4.184 22 C -0.204 4.204 23 C -0.223 4.223 24 O -0.074 6.074 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.206 0.794 29 H 0.184 0.816 30 H 0.246 0.754 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.195 0.805 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.721 16.257 15.596 22.693 hybrid contribution -0.338 0.537 -1.014 1.196 sum -3.059 16.794 14.583 22.451 Atomic orbital electron populations 1.20674 0.81657 1.06110 1.05148 1.23776 0.96015 0.83599 0.99967 1.21948 0.91067 1.01227 1.10332 1.22226 1.00051 0.92357 0.99119 1.21957 0.82140 0.95113 1.17521 1.16739 0.86310 0.81889 0.76188 1.90773 1.22889 1.76603 1.52496 1.45965 1.11147 1.05059 1.72870 1.20724 0.87514 0.89326 0.95631 0.90401 1.21048 0.97466 0.93986 0.84844 1.42716 1.75751 1.04924 1.17004 1.19042 1.31551 0.88462 0.96997 0.91550 1.25339 1.01612 1.00187 0.97552 1.69850 1.49241 1.30891 1.12853 0.85561 0.77242 0.81434 0.78369 1.21052 1.21711 1.18947 1.22622 1.05318 0.99768 0.90729 1.22956 0.94559 1.03807 0.99111 1.23298 0.98581 0.97172 1.03200 1.84027 1.15904 1.36341 1.71092 0.88585 0.89699 0.85973 0.79444 0.81648 0.75369 0.93015 0.93765 0.80479 0.93260 0.85062 0.90070 0.87055 0.87495 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.41 71.23 0.74 -0.20 16 2 C 0.02 0.39 7.31 24.97 0.18 0.58 16 3 C -0.23 -4.46 10.77 22.07 0.24 -4.22 16 4 C -0.12 -2.97 10.62 22.39 0.24 -2.73 16 5 C -0.12 -3.49 7.13 24.07 0.17 -3.32 16 6 C 0.60 19.99 6.62 86.44 0.57 20.56 16 7 O -0.55 -20.10 13.89 -4.33 -0.06 -20.16 16 8 N -0.70 -22.38 3.05 -446.50 -1.36 -23.75 16 9 C 0.17 5.49 2.59 44.99 0.12 5.60 16 10 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 11 C 0.15 5.60 5.80 86.38 0.50 6.10 16 12 N -0.76 -35.37 5.24 -343.46 -1.80 -37.17 16 13 C -0.23 -12.99 10.47 84.03 0.88 -12.11 16 14 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 15 C -0.05 -3.25 5.50 84.86 0.47 -2.78 16 16 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 17 Si 0.95 46.98 27.73 68.60 1.90 48.89 16 18 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.26 -12.34 6.52 99.48 0.65 -11.69 16 21 C -0.16 -4.26 5.71 -10.79 -0.06 -4.32 16 22 C -0.17 -3.95 9.74 30.62 0.30 -3.65 16 23 C -0.19 -4.71 9.82 30.62 0.30 -4.41 16 24 O -0.18 -4.98 10.40 -4.97 -0.05 -5.03 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.41 12.98 8.36 -92.71 -0.77 12.21 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.36 16.94 5.20 -92.71 -0.48 16.46 16 34 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 35 H 0.13 2.94 8.11 -2.39 -0.02 2.92 16 36 H 0.08 2.09 6.67 -2.39 -0.02 2.07 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.85 5.01 -2.39 -0.01 2.84 16 Total: -1.00 -71.58 327.92 3.34 -68.24 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.24 Total: 36.02 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.65 Total: -4.90 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -2.86 Total: -123.06 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.11 Total: -25.19 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.89 kcal Total: -71.58 3.34 -68.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733163750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.235 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds