Wall clock time and date at job start Tue Mar 31 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35128 * 125.61648 * 2 1 4 4 C 1.40368 * 107.11542 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70770 * 359.97438 * 4 3 2 6 6 C 1.46653 * 125.98700 * 179.97438 * 5 4 3 7 7 O 1.21699 * 119.99810 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00152 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00358 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46913 * 34.99538 * 9 8 6 11 11 C 1.52997 * 109.47269 * 154.99590 * 9 8 6 12 12 N 1.46505 * 109.47212 * 304.99931 * 11 9 8 13 13 C 1.36936 * 119.99992 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46951 * 89.99797 * 17 15 13 19 19 H 1.48500 * 109.47313 * 210.00112 * 17 15 13 20 20 H 1.48501 * 109.46991 * 330.00153 * 17 15 13 21 21 C 1.52997 * 109.46834 * 274.99972 * 9 8 6 22 22 C 1.53002 * 117.50022 * 128.74672 * 21 9 8 23 23 C 1.52997 * 117.50076 * 60.08477 * 21 9 8 24 24 O 1.33939 * 125.61544 * 180.31716 * 2 1 3 25 25 H 1.08995 * 109.46756 * 90.00935 * 1 2 3 26 26 H 1.09007 * 109.47038 * 210.00415 * 1 2 3 27 27 H 1.08994 * 109.47211 * 330.00341 * 1 2 3 28 28 H 1.08001 * 126.44198 * 0.02776 * 3 2 1 29 29 H 1.08004 * 126.64457 * 179.97438 * 4 3 2 30 30 H 0.97007 * 119.99723 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 184.99923 * 11 9 8 32 32 H 1.09001 * 109.46832 * 65.00114 * 11 9 8 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 9 34 34 H 0.97001 * 120.00803 * 179.97438 * 16 15 13 35 35 H 1.09003 * 115.54905 * 274.41110 * 21 9 8 36 36 H 1.09000 * 117.49650 * 359.97438 * 22 21 9 37 37 H 1.09001 * 117.49817 * 145.01411 * 22 21 9 38 38 H 1.08996 * 117.49862 * 214.97497 * 23 21 9 39 39 H 1.08996 * 117.50355 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1499 -0.0029 8 7 4.5590 -2.9455 -0.0015 9 6 5.7169 -3.8431 -0.0019 10 1 6.5199 -3.4004 0.5874 11 6 5.3192 -5.1889 0.6077 12 7 4.7486 -4.9722 1.9396 13 6 4.3178 -6.0392 2.6818 14 1 4.3991 -7.0407 2.2855 15 6 3.7767 -5.8339 3.9434 16 7 3.6771 -4.6135 4.4261 17 14 3.1896 -7.2896 4.9562 18 1 4.3089 -7.7954 5.7908 19 1 2.0708 -6.8627 5.8344 20 1 2.7226 -8.3681 4.0484 21 6 6.1966 -4.0559 -1.4390 22 6 7.6820 -3.8311 -1.7286 23 6 6.6437 -2.8216 -2.2247 24 8 2.2870 -1.0888 -0.0060 25 1 -0.3633 -0.0002 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 4.5114 1.2703 -0.0011 30 1 3.6610 -3.3123 -0.0006 31 1 6.2003 -5.8254 0.6891 32 1 4.5794 -5.6723 -0.0303 33 1 4.6753 -4.0727 2.2952 34 1 3.2986 -4.4699 5.3076 35 1 5.6905 -4.8479 -1.9911 36 1 8.3174 -3.5311 -0.8954 37 1 8.1530 -4.4748 -2.4715 38 1 6.4321 -2.8016 -3.2938 39 1 6.5957 -1.8578 -1.7180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733163751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:44 Heat of formation + Delta-G solvation = -7.863381 kcal Electronic energy + Delta-G solvation = -21634.787135 eV Core-core repulsion = 18351.401901 eV Total energy + Delta-G solvation = -3283.385234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.69297 -40.99852 -38.46279 -36.65466 -35.15339 -34.22069 -33.17454 -32.74557 -30.00658 -27.97096 -25.94023 -23.85149 -23.15145 -23.05174 -22.60288 -21.45601 -21.22299 -19.60285 -18.94195 -17.59988 -17.48196 -16.78446 -16.50304 -16.36531 -15.87274 -15.40307 -15.17688 -14.90442 -14.49178 -14.24306 -14.03433 -13.95289 -13.77868 -13.65803 -13.21679 -12.83090 -12.77865 -12.74153 -12.52821 -12.31625 -12.09203 -11.86954 -11.51222 -11.19268 -11.03216 -11.02449 -10.96092 -10.12866 -9.45028 -9.04564 -7.95544 -5.26367 0.01146 1.35620 1.47242 1.49278 1.57645 1.62308 2.10043 2.13922 2.54803 2.99541 3.38481 3.53303 3.63116 3.87329 3.93905 3.96976 4.09181 4.14986 4.29620 4.41360 4.52617 4.59456 4.61634 4.72255 4.73469 4.81047 4.85410 4.92839 5.02687 5.06876 5.12992 5.26738 5.30243 5.45763 5.48159 5.49659 5.88547 6.24107 6.43735 7.00821 7.31176 8.03282 8.27554 9.27572 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.006029 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.891274 B = 4643.326182 C = 6553.782385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 C -0.227 4.227 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.602 3.398 7 O -0.554 6.554 8 N -0.694 5.694 9 C 0.177 3.823 10 H 0.065 0.935 11 C 0.150 3.850 12 N -0.744 5.744 13 C -0.245 4.245 14 H 0.081 0.919 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.976 3.024 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.266 1.266 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.185 4.185 24 O -0.177 6.177 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.189 0.811 29 H 0.165 0.835 30 H 0.408 0.592 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.372 0.628 34 H 0.250 0.750 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 8.939 -14.625 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.246 4.246 4 C -0.141 4.141 5 C -0.163 4.163 6 C 0.390 3.610 7 O -0.435 6.435 8 N -0.342 5.342 9 C 0.073 3.927 10 H 0.083 0.917 11 C 0.023 3.977 12 N -0.388 5.388 13 C -0.377 4.377 14 H 0.099 0.901 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.216 1.216 19 H -0.223 1.223 20 H -0.191 1.191 21 C -0.188 4.188 22 C -0.195 4.195 23 C -0.222 4.222 24 O -0.073 6.073 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.206 0.794 29 H 0.183 0.817 30 H 0.244 0.756 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.204 0.796 34 H 0.059 0.941 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.192 8.706 -14.603 17.299 hybrid contribution -0.460 -0.363 1.144 1.286 sum -3.653 8.343 -13.459 16.251 Atomic orbital electron populations 1.20660 0.81633 1.05686 1.05443 1.23780 0.96055 0.83609 1.00119 1.21934 0.91025 1.01201 1.10427 1.22209 1.00044 0.92331 0.99495 1.21957 0.82123 0.95111 1.17061 1.16723 0.86262 0.81964 0.76075 1.90747 1.23012 1.76692 1.53091 1.45861 1.10924 1.04936 1.72467 1.20698 0.87526 0.89569 0.94955 0.91730 1.21058 0.96952 0.93709 0.85940 1.42538 1.74375 1.06404 1.15435 1.19649 1.31881 0.88895 0.97242 0.90097 1.25607 1.02990 0.99003 0.99144 1.69850 1.52544 1.21117 1.18522 0.85101 0.77131 0.78773 0.78482 1.21599 1.22340 1.19062 1.22569 0.99151 1.01920 0.95180 1.23001 0.90553 1.02534 1.03459 1.23212 1.03978 0.94825 1.00173 1.84031 1.15940 1.36362 1.71006 0.87520 0.90401 0.86423 0.79390 0.81741 0.75647 0.93872 0.94200 0.79579 0.94119 0.85944 0.89736 0.86292 0.87693 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.41 71.24 0.74 -0.36 16 2 C 0.02 0.40 7.31 24.97 0.18 0.58 16 3 C -0.23 -5.12 10.77 22.07 0.24 -4.88 16 4 C -0.12 -3.45 10.62 22.39 0.24 -3.21 16 5 C -0.11 -3.77 7.13 24.07 0.17 -3.60 16 6 C 0.60 22.55 7.12 86.44 0.62 23.17 16 7 O -0.55 -22.60 13.88 -4.35 -0.06 -22.66 16 8 N -0.69 -25.06 4.49 -446.52 -2.01 -27.06 16 9 C 0.18 6.28 2.43 44.99 0.11 6.39 16 10 H 0.06 2.63 7.34 -2.39 -0.02 2.61 16 11 C 0.15 5.94 5.80 86.38 0.50 6.44 16 12 N -0.74 -38.05 5.43 -343.45 -1.87 -39.92 16 13 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 16 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 17 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 C -0.17 -4.77 5.36 -10.80 -0.06 -4.82 16 22 C -0.16 -3.99 10.18 30.62 0.31 -3.68 16 23 C -0.18 -5.08 9.74 30.62 0.30 -4.78 16 24 O -0.18 -5.61 10.40 -5.10 -0.05 -5.66 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.17 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.41 14.68 8.36 -92.70 -0.77 13.91 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.37 20.87 7.33 -92.71 -0.68 20.19 16 34 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.12 3.04 8.11 -2.39 -0.02 3.02 16 36 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.09 3.07 5.01 -2.39 -0.01 3.05 16 Total: -1.00 -70.60 333.95 2.60 -68.00 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -0.38 Total: 44.54 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.66 Total: -5.40 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -3.59 Total: -126.99 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.11 Total: -28.33 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.60 2.60 -68.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733163751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.136 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds