Wall clock time and date at job start Tue Mar 31 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34515 * 125.78435 * 2 1 4 4 C 1.41383 * 106.83837 * 179.89340 * 3 2 1 5 5 C 1.34516 * 106.83830 * 0.36919 * 4 3 2 6 6 C 1.50704 * 125.78811 * 179.79642 * 5 4 3 7 7 C 1.50702 * 109.47292 * 89.99849 * 6 5 4 8 8 O 1.21288 * 119.99940 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00472 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46961 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.96666 * 55.33468 * 11 10 9 13 13 C 1.53946 * 113.76718 * 187.01217 * 11 10 9 14 14 C 1.53949 * 86.29204 * 137.90775 * 13 11 10 15 15 N 1.47582 * 113.76883 * 283.64976 * 11 10 9 16 16 C 1.36939 * 134.49157 * 41.07634 * 15 11 10 17 17 H 1.07998 * 119.99433 * 359.97438 * 16 15 11 18 18 C 1.38802 * 120.00069 * 179.97438 * 16 15 11 19 19 N 1.31618 * 120.00515 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47059 * 120.00075 * 20 18 16 23 23 H 1.48503 * 109.47066 * 240.00186 * 20 18 16 24 24 O 1.34297 * 108.42286 * 359.77113 * 5 4 3 25 25 H 1.09001 * 109.46953 * 179.71480 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.71077 * 1 2 3 27 27 H 1.09000 * 109.47161 * 59.71708 * 1 2 3 28 28 H 1.07998 * 126.58442 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.58146 * 180.12757 * 4 3 2 30 30 H 1.08994 * 109.47298 * 209.99851 * 6 5 4 31 31 H 1.09001 * 109.46897 * 330.00190 * 6 5 4 32 32 H 0.96994 * 119.99108 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47112 * 300.00360 * 10 9 7 34 34 H 1.08997 * 109.47064 * 59.99873 * 10 9 7 35 35 H 1.09003 * 113.74328 * 252.24920 * 13 11 10 36 36 H 1.08995 * 113.74455 * 23.56230 * 13 11 10 37 37 H 1.09003 * 113.76843 * 90.69212 * 14 13 11 38 38 H 1.08995 * 113.76853 * 221.98118 * 14 13 11 39 39 H 0.96999 * 120.00900 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6322 0.0025 5 6 3.5814 -0.7121 -0.0044 6 6 4.7707 -1.6377 -0.0091 7 6 5.1671 -1.9535 1.4101 8 8 4.5448 -1.4745 2.3345 9 7 6.2124 -2.7691 1.6524 10 6 6.5974 -3.0765 3.0320 11 6 7.8048 -4.0161 3.0272 12 1 8.6475 -3.6228 2.4588 13 6 8.1884 -4.5406 4.4228 14 6 8.3938 -5.9066 3.7432 15 7 7.4682 -5.4155 2.7007 16 6 6.6336 -6.0158 1.7961 17 1 6.0432 -5.4121 1.1228 18 6 6.5465 -7.4001 1.7446 19 7 7.2664 -8.1359 2.5648 20 14 5.4074 -8.2191 0.5111 21 1 4.7146 -7.1781 -0.2899 22 1 6.2006 -9.0914 -0.3918 23 1 4.4020 -9.0387 1.2340 24 8 2.2925 -1.0893 -0.0058 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3634 0.5093 0.8926 27 1 -0.3633 0.5182 -0.8874 28 1 1.9665 2.1205 0.0004 29 1 4.5212 1.2435 0.0051 30 1 4.5108 -2.5605 -0.5276 31 1 5.6041 -1.1559 -0.5204 32 1 6.7098 -3.1524 0.9131 33 1 6.8574 -2.1538 3.5509 34 1 5.7637 -3.5581 3.5430 35 1 9.1059 -4.1049 4.8185 36 1 7.3664 -4.5257 5.1384 37 1 9.4100 -6.0703 3.3843 38 1 8.0057 -6.7466 4.3191 39 1 7.2053 -9.1033 2.5290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733215010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:55 Heat of formation + Delta-G solvation = 27.175180 kcal Electronic energy + Delta-G solvation = -21235.375018 eV Core-core repulsion = 17953.509169 eV Total energy + Delta-G solvation = -3281.865848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54732 -39.36093 -37.89087 -34.05790 -33.14747 -32.97801 -32.19777 -30.19358 -28.01243 -27.52625 -24.94869 -23.38745 -22.20891 -21.71766 -20.53781 -19.95516 -19.11102 -17.32425 -16.69437 -16.49601 -15.77318 -15.49177 -15.41486 -14.83350 -14.28584 -13.97274 -13.70496 -13.51751 -13.22042 -13.11953 -12.90528 -12.77270 -12.57842 -12.22197 -11.88275 -11.56887 -11.43448 -11.12700 -11.02896 -10.76015 -10.54826 -10.04440 -9.83116 -9.76782 -9.69222 -9.37518 -8.82351 -8.60136 -8.22820 -6.91320 -5.78459 -3.10971 1.71841 2.61221 2.85317 2.93034 3.36488 3.41511 3.44455 3.63610 4.41224 4.52739 4.85037 5.00895 5.04959 5.08908 5.17404 5.30202 5.31799 5.35917 5.38645 5.56562 5.60361 5.70312 5.83579 5.89964 5.97395 6.07420 6.17935 6.30628 6.38927 6.57098 6.60378 6.70186 6.86447 7.21994 7.22643 7.39200 7.56988 7.85108 7.95916 8.52130 9.01766 9.69170 10.57489 11.38440 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.004312 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.974335 B = 6491.710634 C = 7615.964109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.213 4.213 4 C -0.197 4.197 5 C 0.013 3.987 6 C -0.065 4.065 7 C 0.511 3.489 8 O -0.541 6.541 9 N -0.712 5.712 10 C 0.124 3.876 11 C 0.126 3.874 12 H 0.050 0.950 13 C -0.156 4.156 14 C 0.159 3.841 15 N -0.603 5.603 16 C -0.219 4.219 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 O -0.169 6.169 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.404 0.596 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 15.800 -5.067 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.232 4.232 4 C -0.217 4.217 5 C -0.037 4.037 6 C -0.104 4.104 7 C 0.296 3.704 8 O -0.418 6.418 9 N -0.363 5.363 10 C -0.001 4.001 11 C 0.018 3.982 12 H 0.067 0.933 13 C -0.195 4.195 14 C 0.034 3.966 15 N -0.330 5.330 16 C -0.347 4.347 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 O -0.065 6.065 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.238 0.762 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.829 15.548 -4.548 17.216 hybrid contribution -0.145 -0.595 -1.110 1.268 sum -5.974 14.953 -5.659 17.067 Atomic orbital electron populations 1.20282 0.85333 1.03992 1.03285 1.22377 0.93935 0.84212 1.06111 1.21467 0.92700 0.99185 1.09853 1.21444 0.98136 0.93614 1.08477 1.21478 0.82615 0.93828 1.05798 1.20135 0.93470 1.00239 0.96597 1.20271 0.80465 0.79167 0.90540 1.90711 1.52836 1.52449 1.45852 1.45913 1.32173 1.48080 1.10103 1.21760 0.98540 0.97862 0.81888 1.22502 0.93543 0.87546 0.94567 0.93273 1.23765 1.00055 0.99822 0.95856 1.22232 0.92414 0.93866 0.88122 1.46114 1.46327 0.99122 1.41402 1.18979 1.15321 0.89409 1.10967 0.90301 1.24757 0.99959 0.96012 0.99637 1.69823 1.43070 1.04376 1.39341 0.86131 0.80051 0.79521 0.80549 1.20537 1.21782 1.21728 1.83953 1.16284 1.35071 1.71239 0.90622 0.89782 0.89884 0.83701 0.83692 0.86961 0.86020 0.76176 0.92201 0.91061 0.92760 0.90510 0.95522 0.90876 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 36.01 0.38 -0.26 16 2 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 3 C -0.21 -2.68 10.81 -39.70 -0.43 -3.11 16 4 C -0.20 -2.67 10.81 -39.70 -0.43 -3.10 16 5 C 0.01 0.20 5.81 -35.62 -0.21 -0.01 16 6 C -0.06 -0.83 6.23 -29.03 -0.18 -1.02 16 7 C 0.51 8.57 7.82 -10.98 -0.09 8.48 16 8 O -0.54 -11.24 16.03 5.55 0.09 -11.15 16 9 N -0.71 -11.71 5.35 -60.30 -0.32 -12.03 16 10 C 0.12 2.23 5.54 -4.05 -0.02 2.21 16 11 C 0.13 2.38 4.33 -66.86 -0.29 2.09 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.16 -2.82 7.86 -25.79 -0.20 -3.03 16 14 C 0.16 3.61 7.52 -2.85 -0.02 3.59 16 15 N -0.60 -14.51 3.59 -169.74 -0.61 -15.12 16 16 C -0.22 -5.81 10.51 -15.06 -0.16 -5.97 16 17 H 0.08 1.99 7.49 -52.49 -0.39 1.60 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -26.81 11.40 55.49 0.63 -26.18 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 O -0.17 -2.69 10.65 5.73 0.06 -2.63 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 6.09 8.34 -40.82 -0.34 5.74 16 33 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.86 7.18 -51.93 -0.37 1.48 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -34.03 335.33 -7.86 -41.90 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.74 Total: 4.19 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.01 Total: -0.89 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.30 Total: -53.33 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.15 Total: -13.78 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.03 -7.86 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733215010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.071 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds