Wall clock time and date at job start Tue Mar 31 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34515 * 125.78435 * 2 1 4 4 C 1.41383 * 106.83837 * 179.89340 * 3 2 1 5 5 C 1.34516 * 106.83830 * 0.36919 * 4 3 2 6 6 C 1.50704 * 125.78811 * 179.79642 * 5 4 3 7 7 C 1.50702 * 109.47292 * 89.99849 * 6 5 4 8 8 O 1.21288 * 119.99940 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00472 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46961 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.96666 * 55.33468 * 11 10 9 13 13 C 1.53946 * 113.76718 * 187.01217 * 11 10 9 14 14 C 1.53949 * 86.29204 * 137.90775 * 13 11 10 15 15 N 1.47582 * 113.76883 * 283.64976 * 11 10 9 16 16 C 1.36939 * 134.49157 * 41.07634 * 15 11 10 17 17 H 1.07998 * 119.99433 * 359.97438 * 16 15 11 18 18 C 1.38802 * 120.00069 * 179.97438 * 16 15 11 19 19 N 1.31618 * 120.00515 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47059 * 120.00075 * 20 18 16 23 23 H 1.48503 * 109.47066 * 240.00186 * 20 18 16 24 24 O 1.34297 * 108.42286 * 359.77113 * 5 4 3 25 25 H 1.09001 * 109.46953 * 179.71480 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.71077 * 1 2 3 27 27 H 1.09000 * 109.47161 * 59.71708 * 1 2 3 28 28 H 1.07998 * 126.58442 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.58146 * 180.12757 * 4 3 2 30 30 H 1.08994 * 109.47298 * 209.99851 * 6 5 4 31 31 H 1.09001 * 109.46897 * 330.00190 * 6 5 4 32 32 H 0.96994 * 119.99108 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47112 * 300.00360 * 10 9 7 34 34 H 1.08997 * 109.47064 * 59.99873 * 10 9 7 35 35 H 1.09003 * 113.74328 * 252.24920 * 13 11 10 36 36 H 1.08995 * 113.74455 * 23.56230 * 13 11 10 37 37 H 1.09003 * 113.76843 * 90.69212 * 14 13 11 38 38 H 1.08995 * 113.76853 * 221.98118 * 14 13 11 39 39 H 0.96999 * 120.00900 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6322 0.0025 5 6 3.5814 -0.7121 -0.0044 6 6 4.7707 -1.6377 -0.0091 7 6 5.1671 -1.9535 1.4101 8 8 4.5448 -1.4745 2.3345 9 7 6.2124 -2.7691 1.6524 10 6 6.5974 -3.0765 3.0320 11 6 7.8048 -4.0161 3.0272 12 1 8.6475 -3.6228 2.4588 13 6 8.1884 -4.5406 4.4228 14 6 8.3938 -5.9066 3.7432 15 7 7.4682 -5.4155 2.7007 16 6 6.6336 -6.0158 1.7961 17 1 6.0432 -5.4121 1.1228 18 6 6.5465 -7.4001 1.7446 19 7 7.2664 -8.1359 2.5648 20 14 5.4074 -8.2191 0.5111 21 1 4.7146 -7.1781 -0.2899 22 1 6.2006 -9.0914 -0.3918 23 1 4.4020 -9.0387 1.2340 24 8 2.2925 -1.0893 -0.0058 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3634 0.5093 0.8926 27 1 -0.3633 0.5182 -0.8874 28 1 1.9665 2.1205 0.0004 29 1 4.5212 1.2435 0.0051 30 1 4.5108 -2.5605 -0.5276 31 1 5.6041 -1.1559 -0.5204 32 1 6.7098 -3.1524 0.9131 33 1 6.8574 -2.1538 3.5509 34 1 5.7637 -3.5581 3.5430 35 1 9.1059 -4.1049 4.8185 36 1 7.3664 -4.5257 5.1384 37 1 9.4100 -6.0703 3.3843 38 1 8.0057 -6.7466 4.3191 39 1 7.2053 -9.1033 2.5290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733215010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:55 Heat of formation + Delta-G solvation = 4.396257 kcal Electronic energy + Delta-G solvation = -21236.362786 eV Core-core repulsion = 17953.509169 eV Total energy + Delta-G solvation = -3282.853617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.54866 -40.75874 -39.52443 -35.51436 -34.23265 -34.14175 -33.90436 -31.17987 -29.87850 -28.96142 -25.95774 -25.28553 -23.72062 -22.74999 -21.78748 -21.10007 -20.75568 -18.86512 -18.03911 -17.79116 -17.12137 -16.89555 -16.71435 -16.37866 -15.77010 -15.38118 -15.14388 -14.95531 -14.46195 -14.19520 -13.73324 -13.72641 -13.70829 -13.54530 -13.28280 -12.98328 -12.95624 -12.67723 -12.58572 -12.52245 -12.27189 -11.84301 -11.51170 -11.38407 -10.94940 -10.83215 -10.76794 -10.02747 -9.20488 -8.87102 -7.85775 -5.17095 0.70647 1.43969 1.45736 1.53800 1.59596 1.64504 1.95331 2.37524 2.49818 3.34773 3.40149 3.56887 3.87953 3.98956 4.04245 4.13684 4.17088 4.24888 4.36757 4.42374 4.56441 4.64251 4.71048 4.72426 4.85384 4.87647 4.91970 5.06594 5.06777 5.11636 5.29307 5.35177 5.45539 5.62576 5.66759 5.76107 5.98829 6.23309 6.55753 6.96394 7.22968 7.66954 8.61722 9.31574 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.004312 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.974335 B = 6491.710634 C = 7615.964109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.031 4.031 3 C -0.224 4.224 4 C -0.201 4.201 5 C -0.020 4.020 6 C -0.056 4.056 7 C 0.509 3.491 8 O -0.586 6.586 9 N -0.708 5.708 10 C 0.132 3.868 11 C 0.134 3.866 12 H 0.076 0.924 13 C -0.132 4.132 14 C 0.149 3.851 15 N -0.630 5.630 16 C -0.211 4.211 17 H 0.089 0.911 18 C -0.072 4.072 19 N -0.955 5.955 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.302 1.302 24 O -0.199 6.199 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.164 0.836 30 H 0.122 0.878 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.036 0.964 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 18.169 -6.190 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.243 4.243 4 C -0.220 4.220 5 C -0.069 4.069 6 C -0.095 4.095 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.007 3.993 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.171 4.171 14 C 0.024 3.976 15 N -0.357 5.357 16 C -0.339 4.339 17 H 0.106 0.894 18 C -0.264 4.264 19 N -0.605 5.605 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.229 1.229 24 O -0.097 6.097 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.189 0.811 29 H 0.182 0.818 30 H 0.140 0.860 31 H 0.180 0.820 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.869 17.958 -5.698 19.733 hybrid contribution -0.134 -1.224 -0.720 1.426 sum -6.002 16.735 -6.417 18.901 Atomic orbital electron populations 1.20479 0.82719 1.04486 1.05153 1.23251 0.95653 0.83873 1.05277 1.21872 0.92396 1.00390 1.09617 1.21838 0.99343 0.93523 1.07284 1.21893 0.82772 0.94817 1.07448 1.20213 0.94293 1.00987 0.94006 1.20929 0.79529 0.78093 0.91785 1.90688 1.54161 1.54128 1.47636 1.45876 1.32346 1.47925 1.09730 1.21532 0.96806 0.98120 0.82803 1.22672 0.94305 0.85288 0.94899 0.90677 1.23567 1.01808 0.96316 0.95412 1.22202 0.91748 0.95211 0.88416 1.46466 1.46311 1.01816 1.41109 1.19377 1.14674 0.89602 1.10265 0.89360 1.25500 1.02103 0.97001 1.01838 1.70003 1.45250 1.03865 1.41409 0.85203 0.78136 0.78623 0.78615 1.18785 1.22056 1.22940 1.83934 1.17154 1.36630 1.71958 0.90828 0.88376 0.87384 0.81150 0.81825 0.86013 0.82031 0.75187 0.90220 0.94465 0.88670 0.90657 0.95807 0.94533 0.94681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.42 71.24 0.74 -0.40 16 2 C -0.03 -0.77 7.32 24.83 0.18 -0.59 16 3 C -0.22 -5.24 10.81 22.19 0.24 -5.00 16 4 C -0.20 -5.07 10.81 22.19 0.24 -4.84 16 5 C -0.02 -0.55 5.81 24.83 0.14 -0.41 16 6 C -0.06 -1.33 6.23 29.10 0.18 -1.15 16 7 C 0.51 16.37 7.82 87.66 0.69 17.05 16 8 O -0.59 -24.07 16.03 -3.06 -0.05 -24.11 16 9 N -0.71 -21.92 5.35 -463.06 -2.48 -24.40 16 10 C 0.13 4.53 5.54 86.38 0.48 5.01 16 11 C 0.13 4.76 4.33 45.09 0.20 4.96 16 12 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.13 -4.51 7.86 31.25 0.25 -4.27 16 14 C 0.15 6.80 7.52 86.44 0.65 7.45 16 15 N -0.63 -29.95 3.59 -690.95 -2.48 -32.43 16 16 C -0.21 -11.09 10.51 84.03 0.88 -10.21 16 17 H 0.09 4.36 7.49 -2.91 -0.02 4.34 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.96 -57.31 11.40 21.65 0.25 -57.07 16 20 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 24 O -0.20 -6.24 10.65 -2.40 -0.03 -6.27 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.41 11.38 8.34 -92.71 -0.77 10.61 16 33 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 1.91 7.18 -2.39 -0.02 1.90 16 39 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.77 335.33 2.86 -72.91 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.28 Total: 19.78 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.33 Total: 4.05 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -4.71 Total: -113.89 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.07 Total: -30.38 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.77 2.86 -72.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733215010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.307 kcal (2) G-P(sol) polarization free energy of solvation -75.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds