Wall clock time and date at job start Tue Mar 31 2020 00:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34508 * 125.79196 * 2 1 4 4 C 1.41379 * 106.84417 * 180.02562 * 3 2 1 5 5 C 1.34509 * 106.84075 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.78958 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47357 * 89.99642 * 6 5 4 8 8 O 1.21280 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.78530 * 303.72872 * 11 10 9 13 13 C 1.53499 * 113.46472 * 172.93553 * 11 10 9 14 14 C 1.53749 * 83.25991 * 218.98716 * 13 11 10 15 15 N 1.47072 * 113.46180 * 74.50654 * 11 10 9 16 16 C 1.36931 * 136.06174 * 321.86155 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 O 1.34298 * 108.41995 * 0.25642 * 5 4 3 25 25 H 1.09004 * 109.47412 * 90.00354 * 1 2 3 26 26 H 1.09004 * 109.47034 * 210.00056 * 1 2 3 27 27 H 1.08998 * 109.47282 * 329.99682 * 1 2 3 28 28 H 1.08003 * 126.58001 * 0.02562 * 3 2 1 29 29 H 1.08007 * 126.58015 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46959 * 329.99106 * 6 5 4 31 31 H 1.08999 * 109.46770 * 209.99562 * 6 5 4 32 32 H 0.97001 * 119.99969 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46704 * 59.99925 * 10 9 7 34 34 H 1.08998 * 109.46915 * 299.99782 * 10 9 7 35 35 H 1.09000 * 114.20984 * 332.74702 * 13 11 10 36 36 H 1.09004 * 114.19718 * 105.37227 * 13 11 10 37 37 H 1.09004 * 113.47201 * 271.50865 * 14 13 11 38 38 H 1.09001 * 113.55046 * 140.98942 * 14 13 11 39 39 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 6 5.1668 -1.9473 1.4188 8 8 4.5450 -1.4635 2.3408 9 7 6.2127 -2.7610 1.6647 10 6 6.5982 -3.0614 3.0458 11 6 7.8055 -4.0013 3.0453 12 1 7.6251 -4.9199 2.4871 13 6 8.3943 -4.2406 4.4425 14 6 9.7340 -4.1746 3.6910 15 7 9.0661 -3.3350 2.6850 16 6 9.4501 -2.3644 1.7987 17 1 8.7184 -1.9046 1.1509 18 6 10.7800 -1.9722 1.7320 19 7 11.6720 -2.5336 2.5204 20 14 11.3040 -0.6486 0.5224 21 1 12.7650 -0.4143 0.6473 22 1 10.9902 -1.0895 -0.8604 23 1 10.5732 0.6098 0.8186 24 8 2.2924 -1.0894 -0.0072 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.9666 2.1204 0.0004 29 1 4.5212 1.2433 -0.0012 30 1 5.6040 -1.1584 -0.5153 31 1 4.5107 -2.5630 -0.5163 32 1 6.7102 -3.1477 0.9273 33 1 5.7649 -3.5410 3.5594 34 1 6.8578 -2.1360 3.5600 35 1 8.2303 -3.4217 5.1430 36 1 8.1641 -5.2197 4.8627 37 1 10.0620 -5.1390 3.3029 38 1 10.5169 -3.6528 4.2413 39 1 12.6014 -2.2598 2.4736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733215013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:00 Heat of formation + Delta-G solvation = 30.841519 kcal Electronic energy + Delta-G solvation = -21220.663535 eV Core-core repulsion = 17938.956671 eV Total energy + Delta-G solvation = -3281.706864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54753 -39.38712 -38.07018 -34.05567 -33.14633 -32.98345 -32.23915 -30.20161 -28.06829 -27.49373 -24.93117 -23.49693 -22.08068 -21.70116 -20.52672 -19.94754 -19.22959 -17.31826 -16.69833 -16.51541 -15.79027 -15.50966 -15.38880 -14.83547 -14.21066 -14.08047 -13.70150 -13.48884 -13.20373 -13.08066 -12.93429 -12.76513 -12.64886 -12.20265 -11.84993 -11.63734 -11.49303 -11.13414 -10.99601 -10.79229 -10.61186 -10.03805 -9.86713 -9.81963 -9.68275 -9.24498 -8.84277 -8.58775 -8.22709 -6.93354 -5.80070 -3.12956 1.71204 2.63351 2.83324 2.94037 3.35390 3.39913 3.41753 3.63972 4.40159 4.52782 4.84644 5.03330 5.06451 5.07836 5.20770 5.26668 5.27896 5.37548 5.42690 5.53399 5.54986 5.71294 5.85871 5.89664 6.01553 6.08860 6.17421 6.31020 6.38309 6.57915 6.58246 6.69839 6.86634 7.19406 7.20754 7.36570 7.54497 7.85863 7.94139 8.52736 8.99096 9.66769 10.59843 11.37040 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.004133 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.686135 B = 6773.261810 C = 7865.175653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.210 4.210 4 C -0.195 4.195 5 C 0.012 3.988 6 C -0.063 4.063 7 C 0.510 3.490 8 O -0.541 6.541 9 N -0.712 5.712 10 C 0.122 3.878 11 C 0.127 3.873 12 H 0.048 0.952 13 C -0.161 4.161 14 C 0.151 3.849 15 N -0.601 5.601 16 C -0.216 4.216 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.284 1.284 24 O -0.172 6.172 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.404 0.596 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.820 0.776 -5.020 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.229 4.229 4 C -0.214 4.214 5 C -0.039 4.039 6 C -0.103 4.103 7 C 0.295 3.705 8 O -0.419 6.419 9 N -0.363 5.363 10 C -0.002 4.002 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.200 4.200 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.343 4.343 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.739 3.261 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.211 1.211 24 O -0.069 6.069 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.143 0.857 31 H 0.127 0.873 32 H 0.238 0.762 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.095 1.054 -4.513 17.712 hybrid contribution 0.847 0.683 -1.099 1.547 sum -16.248 1.737 -5.613 17.278 Atomic orbital electron populations 1.20260 0.85324 1.03949 1.03166 1.22345 0.93859 0.84235 1.06518 1.21507 0.92714 0.99220 1.09437 1.21518 0.98261 0.93782 1.07846 1.21467 0.82463 0.93921 1.06029 1.20135 0.93593 1.00008 0.96577 1.20271 0.80597 0.79069 0.90537 1.90708 1.53531 1.51556 1.46066 1.45925 1.31480 1.48751 1.10118 1.21811 0.96466 1.00104 0.81832 1.22420 0.87648 0.93625 0.94381 0.93434 1.23705 1.00416 1.00190 0.95714 1.22083 0.93611 0.93214 0.88519 1.45690 1.02860 1.39913 1.44265 1.18798 0.92568 1.10221 1.12737 0.90242 1.24784 0.95777 0.99985 0.99823 1.69819 1.01773 1.44449 1.40459 0.86253 0.77647 0.81582 0.80605 1.21540 1.21174 1.21086 1.83904 1.16280 1.35098 1.71604 0.90359 0.90670 0.89500 0.83677 0.83530 0.85746 0.87284 0.76153 0.92320 0.91076 0.90205 0.92363 0.95739 0.90930 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.00 0.38 -0.20 16 2 C -0.02 -0.25 7.32 -35.63 -0.26 -0.51 16 3 C -0.21 -2.71 10.81 -39.71 -0.43 -3.14 16 4 C -0.19 -2.80 10.81 -39.71 -0.43 -3.23 16 5 C 0.01 0.17 5.81 -35.62 -0.21 -0.04 16 6 C -0.06 -0.82 6.23 -29.03 -0.18 -1.00 16 7 C 0.51 8.58 7.82 -10.99 -0.09 8.49 16 8 O -0.54 -11.26 16.03 5.56 0.09 -11.17 16 9 N -0.71 -11.76 5.33 -60.29 -0.32 -12.08 16 10 C 0.12 2.21 5.52 -4.04 -0.02 2.18 16 11 C 0.13 2.41 4.10 -72.39 -0.30 2.11 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.16 -2.91 8.04 -26.08 -0.21 -3.12 16 14 C 0.15 3.43 7.41 -8.37 -0.06 3.36 16 15 N -0.60 -14.41 3.65 -176.82 -0.65 -15.06 16 16 C -0.22 -5.67 10.55 -15.06 -0.16 -5.83 16 17 H 0.08 1.97 7.50 -52.49 -0.39 1.57 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -26.70 11.50 55.49 0.64 -26.06 16 20 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 O -0.17 -2.59 10.65 5.71 0.06 -2.53 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.15 1.93 8.06 -52.48 -0.42 1.50 16 30 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.40 6.14 8.37 -40.82 -0.34 5.79 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.84 7.11 -51.93 -0.37 1.48 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -33.67 335.34 -7.95 -41.62 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.73 Total: 4.88 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.06 Total: -1.21 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.33 Total: -53.20 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.15 Total: -13.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.67 -7.95 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733215013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.462 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds