Wall clock time and date at job start Tue Mar 31 2020 00:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34508 * 125.79196 * 2 1 4 4 C 1.41379 * 106.84417 * 180.02562 * 3 2 1 5 5 C 1.34509 * 106.84075 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.78958 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47357 * 89.99642 * 6 5 4 8 8 O 1.21280 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.78530 * 303.72872 * 11 10 9 13 13 C 1.53499 * 113.46472 * 172.93553 * 11 10 9 14 14 C 1.53749 * 83.25991 * 218.98716 * 13 11 10 15 15 N 1.47072 * 113.46180 * 74.50654 * 11 10 9 16 16 C 1.36931 * 136.06174 * 321.86155 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 O 1.34298 * 108.41995 * 0.25642 * 5 4 3 25 25 H 1.09004 * 109.47412 * 90.00354 * 1 2 3 26 26 H 1.09004 * 109.47034 * 210.00056 * 1 2 3 27 27 H 1.08998 * 109.47282 * 329.99682 * 1 2 3 28 28 H 1.08003 * 126.58001 * 0.02562 * 3 2 1 29 29 H 1.08007 * 126.58015 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46959 * 329.99106 * 6 5 4 31 31 H 1.08999 * 109.46770 * 209.99562 * 6 5 4 32 32 H 0.97001 * 119.99969 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46704 * 59.99925 * 10 9 7 34 34 H 1.08998 * 109.46915 * 299.99782 * 10 9 7 35 35 H 1.09000 * 114.20984 * 332.74702 * 13 11 10 36 36 H 1.09004 * 114.19718 * 105.37227 * 13 11 10 37 37 H 1.09004 * 113.47201 * 271.50865 * 14 13 11 38 38 H 1.09001 * 113.55046 * 140.98942 * 14 13 11 39 39 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 6 5.1668 -1.9473 1.4188 8 8 4.5450 -1.4635 2.3408 9 7 6.2127 -2.7610 1.6647 10 6 6.5982 -3.0614 3.0458 11 6 7.8055 -4.0013 3.0453 12 1 7.6251 -4.9199 2.4871 13 6 8.3943 -4.2406 4.4425 14 6 9.7340 -4.1746 3.6910 15 7 9.0661 -3.3350 2.6850 16 6 9.4501 -2.3644 1.7987 17 1 8.7184 -1.9046 1.1509 18 6 10.7800 -1.9722 1.7320 19 7 11.6720 -2.5336 2.5204 20 14 11.3040 -0.6486 0.5224 21 1 12.7650 -0.4143 0.6473 22 1 10.9902 -1.0895 -0.8604 23 1 10.5732 0.6098 0.8186 24 8 2.2924 -1.0894 -0.0072 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.9666 2.1204 0.0004 29 1 4.5212 1.2433 -0.0012 30 1 5.6040 -1.1584 -0.5153 31 1 4.5107 -2.5630 -0.5163 32 1 6.7102 -3.1477 0.9273 33 1 5.7649 -3.5410 3.5594 34 1 6.8578 -2.1360 3.5600 35 1 8.2303 -3.4217 5.1430 36 1 8.1641 -5.2197 4.8627 37 1 10.0620 -5.1390 3.3029 38 1 10.5169 -3.6528 4.2413 39 1 12.6014 -2.2598 2.4736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733215013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:00 Heat of formation + Delta-G solvation = 8.399303 kcal Electronic energy + Delta-G solvation = -21221.636703 eV Core-core repulsion = 17938.956671 eV Total energy + Delta-G solvation = -3282.680032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -43.55564 -40.80605 -39.68716 -35.51351 -34.25137 -34.15224 -33.91741 -31.17985 -29.92724 -28.91717 -25.93900 -25.37572 -23.58957 -22.76605 -21.78743 -21.13972 -20.84013 -18.85571 -18.05226 -17.79791 -17.10950 -16.89923 -16.74418 -16.33616 -15.79068 -15.33973 -15.22868 -14.80462 -14.48068 -14.23964 -13.79000 -13.76743 -13.68856 -13.47412 -13.34715 -12.97842 -12.92069 -12.68030 -12.59230 -12.51241 -12.33840 -11.83743 -11.63081 -11.26851 -10.91043 -10.82438 -10.75623 -10.02367 -9.21849 -8.87827 -7.85316 -5.17317 0.69306 1.46358 1.49226 1.54424 1.59286 1.62546 1.92125 2.37201 2.50581 3.36888 3.45392 3.56507 3.85899 3.96612 4.00684 4.11247 4.17368 4.25616 4.35804 4.42482 4.58783 4.64394 4.70194 4.72018 4.85201 4.87586 4.92313 5.06214 5.06657 5.10807 5.28039 5.34340 5.45565 5.60359 5.63343 5.74959 5.98588 6.20205 6.55623 6.95068 7.22686 7.66419 8.65974 9.32325 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.004133 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.686135 B = 6773.261810 C = 7865.175653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.025 4.025 3 C -0.227 4.227 4 C -0.212 4.212 5 C -0.013 4.013 6 C -0.055 4.055 7 C 0.509 3.491 8 O -0.586 6.586 9 N -0.708 5.708 10 C 0.131 3.869 11 C 0.135 3.865 12 H 0.072 0.928 13 C -0.137 4.137 14 C 0.142 3.858 15 N -0.629 5.629 16 C -0.209 4.209 17 H 0.092 0.908 18 C -0.073 4.073 19 N -0.956 5.956 20 Si 0.969 3.031 21 H -0.301 1.301 22 H -0.270 1.270 23 H -0.283 1.283 24 O -0.190 6.190 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.168 0.832 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.973 0.500 -6.166 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.245 4.245 4 C -0.231 4.231 5 C -0.063 4.063 6 C -0.094 4.094 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.006 3.994 11 C 0.029 3.971 12 H 0.089 0.911 13 C -0.175 4.175 14 C 0.017 3.983 15 N -0.355 5.355 16 C -0.337 4.337 17 H 0.110 0.890 18 C -0.265 4.265 19 N -0.606 5.606 20 Si 0.798 3.202 21 H -0.227 1.227 22 H -0.196 1.196 23 H -0.209 1.209 24 O -0.088 6.088 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.248 0.752 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.282 0.755 -5.685 20.116 hybrid contribution 1.417 0.752 -0.701 1.750 sum -17.865 1.508 -6.386 19.032 Atomic orbital electron populations 1.20480 0.82246 1.05058 1.04833 1.23243 0.95681 0.83667 1.04913 1.21864 0.92258 1.00568 1.09843 1.21834 0.99294 0.94155 1.07816 1.21797 0.82952 0.94486 1.07086 1.20189 0.93750 1.01447 0.94044 1.20914 0.79727 0.77933 0.91762 1.90686 1.54938 1.53155 1.47843 1.45886 1.31507 1.48735 1.09743 1.21579 0.96613 0.98491 0.82730 1.22553 0.86041 0.93834 0.94717 0.91056 1.23532 0.96454 1.02342 0.95203 1.22093 0.94847 0.92418 0.88979 1.46011 1.05342 1.40107 1.44039 1.19236 0.92607 1.09914 1.11932 0.89048 1.25569 0.96292 1.02627 1.02057 1.70015 1.01464 1.46450 1.42645 0.85278 0.76345 0.79198 0.79339 1.22747 1.19615 1.20934 1.83897 1.16641 1.36244 1.71970 0.88294 0.90323 0.87587 0.81486 0.83082 0.83593 0.84305 0.75184 0.90597 0.94218 0.90485 0.88276 0.95862 0.94677 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.23 0.74 -0.23 16 2 C -0.03 -0.61 7.32 24.83 0.18 -0.43 16 3 C -0.23 -5.57 10.81 22.19 0.24 -5.33 16 4 C -0.21 -5.93 10.81 22.19 0.24 -5.69 16 5 C -0.01 -0.38 5.81 24.83 0.14 -0.23 16 6 C -0.06 -1.31 6.23 29.10 0.18 -1.13 16 7 C 0.51 16.43 7.82 87.66 0.69 17.11 16 8 O -0.59 -24.14 16.03 -3.03 -0.05 -24.19 16 9 N -0.71 -22.06 5.33 -463.06 -2.47 -24.53 16 10 C 0.13 4.51 5.52 86.38 0.48 4.98 16 11 C 0.13 4.82 4.10 41.79 0.17 4.99 16 12 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 13 C -0.14 -4.66 8.04 31.01 0.25 -4.41 16 14 C 0.14 6.44 7.41 83.26 0.62 7.06 16 15 N -0.63 -29.78 3.65 -713.34 -2.60 -32.39 16 16 C -0.21 -10.88 10.55 84.03 0.89 -9.99 16 17 H 0.09 4.41 7.50 -2.91 -0.02 4.38 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 19 N -0.96 -57.13 11.50 21.65 0.25 -56.88 16 20 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 O -0.19 -5.51 10.65 -2.48 -0.03 -5.54 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.41 11.51 8.37 -92.71 -0.78 10.73 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 36 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.03 1.84 7.11 -2.39 -0.02 1.82 16 39 H 0.24 14.41 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -74.63 335.34 2.69 -71.94 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.27 Total: 21.70 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.28 Total: 3.13 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.82 Total: -113.80 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.07 Total: -29.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.63 2.69 -71.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733215013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.344 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds