Wall clock time and date at job start Tue Mar 31 2020 01:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35128 * 125.61872 * 2 1 4 4 C 1.40372 * 107.11697 * 180.02562 * 3 2 1 5 5 C 1.50689 * 126.64679 * 180.02562 * 4 3 2 6 6 C 1.36542 * 106.70333 * 0.02562 * 4 3 2 7 7 C 1.46664 * 125.98389 * 179.97438 * 6 4 3 8 8 O 1.21691 * 120.00154 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99921 * 180.02562 * 7 6 4 10 10 C 1.46492 * 120.00260 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47489 * 174.42050 * 10 9 7 12 12 N 1.46496 * 115.55145 * 324.36777 * 11 10 9 13 13 C 1.36939 * 119.99805 * 294.99859 * 12 11 10 14 14 H 1.08001 * 120.00336 * 356.89341 * 13 12 11 15 15 C 1.38814 * 120.00249 * 176.89294 * 13 12 11 16 16 N 1.31621 * 119.99789 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00267 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47235 * 89.99810 * 17 15 13 19 19 H 1.48501 * 109.47428 * 209.99765 * 17 15 13 20 20 H 1.48502 * 109.47137 * 330.00131 * 17 15 13 21 21 C 1.53000 * 117.49663 * 110.03719 * 11 10 9 22 22 C 1.53002 * 117.50130 * 178.69646 * 11 10 9 23 23 O 1.33934 * 125.61375 * 180.32979 * 2 1 3 24 24 H 1.09005 * 109.47644 * 89.99591 * 1 2 3 25 25 H 1.08994 * 109.47238 * 210.00054 * 1 2 3 26 26 H 1.09008 * 109.47002 * 330.00036 * 1 2 3 27 27 H 1.08005 * 126.44583 * 0.03684 * 3 2 1 28 28 H 1.09003 * 109.47536 * 269.97473 * 5 4 3 29 29 H 1.09002 * 109.47607 * 29.98112 * 5 4 3 30 30 H 1.09005 * 109.47372 * 149.97439 * 5 4 3 31 31 H 0.97000 * 120.00083 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.47039 * 54.41754 * 10 9 7 33 33 H 1.09001 * 109.47041 * 294.42789 * 10 9 7 34 34 H 0.96996 * 120.00499 * 115.27004 * 12 11 10 35 35 H 0.96997 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.09009 * 117.49748 * 215.00411 * 21 11 10 37 37 H 1.08999 * 117.50200 * 0.02562 * 21 11 10 38 38 H 1.09001 * 117.49624 * 359.97438 * 22 11 10 39 39 H 1.08997 * 117.50123 * 144.97781 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 4.8617 1.5141 -0.0003 6 6 3.5822 -0.7117 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8680 -1.1502 -0.0038 9 7 4.5589 -2.9456 -0.0043 10 6 5.7166 -3.8432 -0.0062 11 6 5.2402 -5.2905 0.1328 12 7 4.0713 -5.4911 0.9926 13 6 4.1533 -5.2235 2.3331 14 1 5.0930 -4.9127 2.7653 15 6 3.0287 -5.3516 3.1366 16 7 1.8832 -5.7299 2.6100 17 14 3.1408 -4.9873 4.9653 18 1 2.8419 -3.5523 5.2034 19 1 2.1584 -5.8257 5.6983 20 1 4.5112 -5.2942 5.4481 21 6 5.3843 -6.2019 -1.0876 22 6 6.3051 -6.3890 0.1207 23 8 2.2869 -1.0888 -0.0063 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.9613 2.1260 0.0006 28 1 5.1600 1.7221 -1.0279 29 1 4.6514 2.4519 0.5139 30 1 5.6685 0.9913 0.5134 31 1 3.6609 -3.3124 -0.0039 32 1 6.3709 -3.5942 0.8293 33 1 6.2634 -3.7289 -0.9422 34 1 3.2403 -5.8171 0.6132 35 1 1.0974 -5.8198 3.1715 36 1 4.6092 -6.9508 -1.2508 37 1 5.8188 -5.7706 -1.9894 38 1 7.3451 -6.0807 0.0133 39 1 6.1361 -7.2608 0.7528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733241210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:57 Heat of formation + Delta-G solvation = 9.045353 kcal Electronic energy + Delta-G solvation = -21806.479594 eV Core-core repulsion = 18523.827578 eV Total energy + Delta-G solvation = -3282.652017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51407 -39.08530 -37.44709 -34.25861 -33.33482 -33.10614 -32.31126 -29.71236 -27.93490 -27.84409 -25.54094 -23.92126 -21.89102 -21.40690 -21.02878 -19.52630 -18.99378 -17.63821 -17.10544 -16.31579 -15.90194 -15.21150 -14.81739 -14.45895 -14.25151 -13.81436 -13.56433 -13.35629 -13.13392 -13.09060 -12.84841 -12.79986 -12.48121 -12.33828 -12.23661 -11.89361 -11.48359 -11.00485 -10.94489 -10.91763 -10.36036 -10.26568 -9.78310 -9.69950 -9.48848 -9.35645 -8.91367 -8.57800 -8.13640 -7.12571 -5.86832 -3.17866 1.31167 2.45810 2.88362 3.39267 3.45424 3.46173 3.53879 3.69386 4.40815 4.55184 4.69907 4.93161 5.11942 5.21166 5.29616 5.33252 5.40154 5.48058 5.49251 5.55541 5.66986 5.74364 5.82764 5.89230 5.95727 6.12555 6.16303 6.23562 6.30976 6.36056 6.44145 6.59037 6.61168 6.77028 6.92619 7.13918 7.68345 8.04998 8.30549 8.57410 9.42639 9.93898 10.29647 11.34674 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.006438 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.073598 B = 4347.906376 C = 5454.780660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.228 4.228 4 C -0.097 4.097 5 C -0.090 4.090 6 C -0.073 4.073 7 C 0.597 3.403 8 O -0.539 6.539 9 N -0.686 5.686 10 C 0.151 3.849 11 C 0.126 3.874 12 N -0.688 5.688 13 C -0.236 4.236 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.930 5.930 17 Si 0.905 3.095 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.185 4.185 22 C -0.190 4.190 23 O -0.152 6.152 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.389 0.611 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 10.165 -8.128 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.247 4.247 4 C -0.100 4.100 5 C -0.146 4.146 6 C -0.125 4.125 7 C 0.383 3.617 8 O -0.420 6.420 9 N -0.336 5.336 10 C 0.025 3.975 11 C 0.032 3.968 12 N -0.328 5.328 13 C -0.367 4.367 14 H 0.089 0.911 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.736 3.264 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.223 4.223 22 C -0.231 4.231 23 O -0.048 6.048 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.169 0.831 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.224 0.776 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.821 10.161 -7.927 12.913 hybrid contribution -0.778 -0.043 1.035 1.295 sum 0.044 10.118 -6.892 12.242 Atomic orbital electron populations 1.20393 0.84855 1.04560 1.03681 1.22735 0.94294 0.84214 1.02160 1.21380 0.91932 0.99457 1.11924 1.20529 0.96188 0.92207 1.01075 1.20364 0.94122 0.97696 1.02461 1.21950 0.82079 0.94086 1.14382 1.16514 0.85820 0.81833 0.77495 1.90780 1.22051 1.76290 1.52845 1.45715 1.11885 1.04483 1.71469 1.21141 0.87268 0.88385 1.00706 1.20206 0.92769 0.88750 0.95075 1.41801 1.08333 1.78062 1.04613 1.19134 0.95268 1.38640 0.83631 0.91082 1.24727 0.95533 1.01946 0.98155 1.69650 0.99945 1.53289 1.34854 0.86220 0.77180 0.77738 0.85271 1.21645 1.21716 1.20637 1.23197 1.03331 1.03582 0.92202 1.23369 0.95549 1.03090 1.01054 1.84097 1.15872 1.34443 1.70357 0.89808 0.89817 0.89244 0.83099 0.91210 0.91895 0.89494 0.74801 0.91222 0.92063 0.77630 0.93405 0.89049 0.89349 0.89851 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.41 36.00 0.37 -0.41 16 2 C 0.02 0.27 7.31 -35.42 -0.26 0.01 16 3 C -0.23 -3.12 10.73 -39.89 -0.43 -3.55 16 4 C -0.10 -1.55 6.20 -104.44 -0.65 -2.20 16 5 C -0.09 -1.24 9.81 36.00 0.35 -0.88 16 6 C -0.07 -1.34 7.13 -36.79 -0.26 -1.60 16 7 C 0.60 11.79 7.79 -12.86 -0.10 11.69 16 8 O -0.54 -11.19 14.73 5.20 0.08 -11.12 16 9 N -0.69 -13.43 5.39 -61.63 -0.33 -13.76 16 10 C 0.15 2.82 5.69 -4.05 -0.02 2.80 16 11 C 0.13 2.42 2.46 -131.82 -0.32 2.10 16 12 N -0.69 -16.16 4.49 -47.23 -0.21 -16.37 16 13 C -0.24 -6.27 9.81 -15.06 -0.15 -6.42 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.19 -2.99 10.11 -26.69 -0.27 -3.26 16 22 C -0.19 -3.26 10.18 -26.69 -0.27 -3.53 16 23 O -0.15 -2.73 10.40 4.99 0.05 -2.67 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.36 6.45 -51.93 -0.33 1.03 16 31 H 0.41 8.51 7.54 -40.82 -0.31 8.20 16 32 H 0.07 1.39 8.13 -51.92 -0.42 0.96 16 33 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 34 H 0.39 9.71 8.03 -40.82 -0.33 9.38 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 37 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -30.42 337.52 -7.30 -37.72 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.57 Total: 15.49 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.10 Total: -5.56 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.18 Total: -56.23 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.13 Total: -13.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.42 -7.30 -37.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733241210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.769 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds