Wall clock time and date at job start Tue Mar 31 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35128 * 125.61872 * 2 1 4 4 C 1.40372 * 107.11697 * 180.02562 * 3 2 1 5 5 C 1.50689 * 126.64679 * 180.02562 * 4 3 2 6 6 C 1.36542 * 106.70333 * 0.02562 * 4 3 2 7 7 C 1.46664 * 125.98389 * 179.97438 * 6 4 3 8 8 O 1.21691 * 120.00154 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99921 * 180.02562 * 7 6 4 10 10 C 1.46492 * 120.00260 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47489 * 174.42050 * 10 9 7 12 12 N 1.46496 * 115.55145 * 324.36777 * 11 10 9 13 13 C 1.36939 * 119.99805 * 294.99859 * 12 11 10 14 14 H 1.08001 * 120.00336 * 356.89341 * 13 12 11 15 15 C 1.38814 * 120.00249 * 176.89294 * 13 12 11 16 16 N 1.31621 * 119.99789 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00267 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47235 * 89.99810 * 17 15 13 19 19 H 1.48501 * 109.47428 * 209.99765 * 17 15 13 20 20 H 1.48502 * 109.47137 * 330.00131 * 17 15 13 21 21 C 1.53000 * 117.49663 * 110.03719 * 11 10 9 22 22 C 1.53002 * 117.50130 * 178.69646 * 11 10 9 23 23 O 1.33934 * 125.61375 * 180.32979 * 2 1 3 24 24 H 1.09005 * 109.47644 * 89.99591 * 1 2 3 25 25 H 1.08994 * 109.47238 * 210.00054 * 1 2 3 26 26 H 1.09008 * 109.47002 * 330.00036 * 1 2 3 27 27 H 1.08005 * 126.44583 * 0.03684 * 3 2 1 28 28 H 1.09003 * 109.47536 * 269.97473 * 5 4 3 29 29 H 1.09002 * 109.47607 * 29.98112 * 5 4 3 30 30 H 1.09005 * 109.47372 * 149.97439 * 5 4 3 31 31 H 0.97000 * 120.00083 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.47039 * 54.41754 * 10 9 7 33 33 H 1.09001 * 109.47041 * 294.42789 * 10 9 7 34 34 H 0.96996 * 120.00499 * 115.27004 * 12 11 10 35 35 H 0.96997 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.09009 * 117.49748 * 215.00411 * 21 11 10 37 37 H 1.08999 * 117.50200 * 0.02562 * 21 11 10 38 38 H 1.09001 * 117.49624 * 359.97438 * 22 11 10 39 39 H 1.08997 * 117.50123 * 144.97781 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 4.8617 1.5141 -0.0003 6 6 3.5822 -0.7117 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8680 -1.1502 -0.0038 9 7 4.5589 -2.9456 -0.0043 10 6 5.7166 -3.8432 -0.0062 11 6 5.2402 -5.2905 0.1328 12 7 4.0713 -5.4911 0.9926 13 6 4.1533 -5.2235 2.3331 14 1 5.0930 -4.9127 2.7653 15 6 3.0287 -5.3516 3.1366 16 7 1.8832 -5.7299 2.6100 17 14 3.1408 -4.9873 4.9653 18 1 2.8419 -3.5523 5.2034 19 1 2.1584 -5.8257 5.6983 20 1 4.5112 -5.2942 5.4481 21 6 5.3843 -6.2019 -1.0876 22 6 6.3051 -6.3890 0.1207 23 8 2.2869 -1.0888 -0.0063 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5139 27 1 1.9613 2.1260 0.0006 28 1 5.1600 1.7221 -1.0279 29 1 4.6514 2.4519 0.5139 30 1 5.6685 0.9913 0.5134 31 1 3.6609 -3.3124 -0.0039 32 1 6.3709 -3.5942 0.8293 33 1 6.2634 -3.7289 -0.9422 34 1 3.2403 -5.8171 0.6132 35 1 1.0974 -5.8198 3.1715 36 1 4.6092 -6.9508 -1.2508 37 1 5.8188 -5.7706 -1.9894 38 1 7.3451 -6.0807 0.0133 39 1 6.1361 -7.2608 0.7528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733241210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:56 Heat of formation + Delta-G solvation = -10.588136 kcal Electronic energy + Delta-G solvation = -21807.330966 eV Core-core repulsion = 18523.827578 eV Total energy + Delta-G solvation = -3283.503389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.72115 -40.58545 -38.97494 -35.57623 -35.05811 -34.72053 -33.33369 -31.64455 -29.27467 -28.86380 -26.86499 -25.93939 -23.26076 -22.65774 -22.25413 -20.99547 -20.38618 -19.17635 -18.98167 -17.58978 -17.45623 -16.63795 -16.27227 -16.09186 -15.71407 -15.44278 -15.06706 -14.77613 -14.44252 -14.16848 -13.96192 -13.86117 -13.66444 -13.62542 -13.55713 -13.24990 -12.95823 -12.88437 -12.57289 -12.28995 -12.20462 -11.95125 -11.76389 -11.21506 -10.95899 -10.69090 -10.62583 -10.06822 -9.37779 -9.06492 -7.97751 -5.26457 0.02265 1.33766 1.41413 1.43158 1.50035 1.69385 2.10739 2.28603 2.50816 3.03208 3.37717 3.59947 3.63661 3.80815 3.85515 3.89075 4.15018 4.39071 4.45899 4.48107 4.58570 4.65211 4.69920 4.77009 4.78290 4.82308 4.84099 4.96268 5.01222 5.12725 5.16781 5.24328 5.37533 5.41846 5.53859 5.57412 5.93548 6.24510 6.52520 7.05506 7.31344 8.01953 8.26802 9.24140 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.006438 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.073598 B = 4347.906376 C = 5454.780660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 C -0.226 4.226 4 C -0.092 4.092 5 C -0.088 4.088 6 C -0.122 4.122 7 C 0.593 3.407 8 O -0.559 6.559 9 N -0.691 5.691 10 C 0.157 3.843 11 C 0.093 3.907 12 N -0.695 5.695 13 C -0.223 4.223 14 H 0.064 0.936 15 C -0.063 4.063 16 N -0.959 5.959 17 Si 0.957 3.043 18 H -0.295 1.295 19 H -0.292 1.292 20 H -0.274 1.274 21 C -0.157 4.157 22 C -0.182 4.182 23 O -0.180 6.180 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.190 0.810 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.408 0.592 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.378 0.622 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 11.652 -8.985 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.245 4.245 4 C -0.095 4.095 5 C -0.145 4.145 6 C -0.173 4.173 7 C 0.380 3.620 8 O -0.442 6.442 9 N -0.339 5.339 10 C 0.032 3.968 11 C 0.001 3.999 12 N -0.334 5.334 13 C -0.355 4.355 14 H 0.082 0.918 15 C -0.255 4.255 16 N -0.609 5.609 17 Si 0.787 3.213 18 H -0.222 1.222 19 H -0.218 1.218 20 H -0.199 1.199 21 C -0.195 4.195 22 C -0.222 4.222 23 O -0.077 6.077 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.207 0.793 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.212 0.788 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.866 11.646 -8.801 14.623 hybrid contribution -0.771 -0.445 1.226 1.515 sum 0.095 11.201 -7.574 13.522 Atomic orbital electron populations 1.20650 0.81805 1.05537 1.05410 1.23743 0.96044 0.83686 1.00092 1.21795 0.90481 1.01045 1.11169 1.21023 0.98088 0.91586 0.98774 1.20413 0.92499 0.98210 1.03338 1.21846 0.82129 0.94837 1.18503 1.16777 0.86320 0.81929 0.76934 1.90744 1.22888 1.76572 1.53959 1.45769 1.11666 1.04775 1.71721 1.21126 0.86917 0.87754 1.01043 1.20466 0.92613 0.89591 0.97207 1.41782 1.09408 1.78094 1.04087 1.19275 0.94593 1.36478 0.85157 0.91794 1.25323 0.95618 1.03279 1.01330 1.69763 1.00268 1.55296 1.35599 0.85395 0.77203 0.76954 0.81774 1.22230 1.21821 1.19946 1.23285 1.02317 1.01628 0.92245 1.23367 0.96545 1.01027 1.01238 1.84070 1.16065 1.36281 1.71252 0.87562 0.90840 0.86172 0.79301 0.89906 0.88950 0.91839 0.75573 0.93120 0.89749 0.78815 0.94005 0.89195 0.86232 0.87273 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.41 71.23 0.74 -0.63 16 2 C 0.02 0.46 7.31 24.97 0.18 0.64 16 3 C -0.23 -5.64 10.73 22.07 0.24 -5.41 16 4 C -0.09 -2.84 6.20 -19.74 -0.12 -2.97 16 5 C -0.09 -2.30 9.81 71.23 0.70 -1.61 16 6 C -0.12 -4.55 7.13 24.07 0.17 -4.38 16 7 C 0.59 24.04 7.79 86.44 0.67 24.71 16 8 O -0.56 -23.75 14.73 -4.32 -0.06 -23.81 16 9 N -0.69 -27.74 5.39 -467.11 -2.52 -30.26 16 10 C 0.16 5.85 5.69 86.38 0.49 6.34 16 11 C 0.09 3.54 2.46 3.60 0.01 3.55 16 12 N -0.69 -33.15 4.49 -303.35 -1.36 -34.51 16 13 C -0.22 -12.07 9.81 84.03 0.82 -11.24 16 14 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 15 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 16 N -0.96 -56.57 13.06 21.65 0.28 -56.29 16 17 Si 0.96 46.57 29.55 68.60 2.03 48.60 16 18 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 21 C -0.16 -4.73 10.11 30.62 0.31 -4.42 16 22 C -0.18 -5.94 10.18 30.62 0.31 -5.63 16 23 O -0.18 -6.53 10.40 -5.07 -0.05 -6.59 16 24 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.12 1.37 8.14 -2.38 -0.02 1.36 16 27 H 0.19 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.98 6.45 -2.38 -0.02 1.96 16 31 H 0.41 17.40 7.54 -92.71 -0.70 16.71 16 32 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 33 H 0.08 2.71 7.91 -2.39 -0.02 2.69 16 34 H 0.38 19.36 8.03 -92.71 -0.74 18.62 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.12 2.89 8.06 -2.39 -0.02 2.87 16 38 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -67.54 337.52 2.94 -64.60 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.37 Total: 42.33 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.00 Total: -4.08 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -3.60 Total: -121.05 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.12 Total: -30.40 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -67.54 2.94 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733241210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.015 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds