Wall clock time and date at job start Tue Mar 31 2020 01:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40374 * 126.64576 * 2 1 4 4 C 1.35132 * 107.11392 * 179.97438 * 3 2 1 5 5 O 1.33931 * 108.76580 * 359.77103 * 4 3 2 6 6 C 1.34907 * 109.38666 * 0.37556 * 5 4 3 7 7 C 1.46662 * 125.98491 * 179.88273 * 6 5 4 8 8 O 1.21694 * 119.99512 * 179.69284 * 7 6 5 9 9 N 1.34777 * 120.00083 * 359.70104 * 7 6 5 10 10 C 1.47420 * 125.64625 * 4.76548 * 9 7 6 11 11 C 1.54911 * 104.82931 * 204.15166 * 10 9 7 12 12 C 1.55165 * 101.58387 * 322.99090 * 11 10 9 13 13 C 1.47020 * 125.64512 * 184.79535 * 9 7 6 14 14 H 1.08999 * 110.01584 * 59.42490 * 13 9 7 15 15 C 1.53008 * 109.88047 * 298.32884 * 13 9 7 16 16 N 1.46503 * 109.46899 * 178.09795 * 15 13 9 17 17 C 1.36929 * 119.99747 * 174.93396 * 16 15 13 18 18 H 1.07996 * 120.00680 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00085 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47251 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47281 * 300.00550 * 21 19 17 24 24 H 1.48501 * 109.46934 * 60.00231 * 21 19 17 25 25 H 1.09004 * 109.47098 * 270.04098 * 1 2 3 26 26 H 1.09000 * 109.47062 * 30.04444 * 1 2 3 27 27 H 1.08996 * 109.46862 * 150.04424 * 1 2 3 28 28 H 1.07994 * 126.43990 * 359.96635 * 3 2 1 29 29 H 1.07996 * 125.61359 * 180.02562 * 4 3 2 30 30 H 1.08998 * 110.36579 * 85.31999 * 10 9 7 31 31 H 1.09001 * 110.46192 * 323.03428 * 10 9 7 32 32 H 1.09005 * 111.00723 * 204.91883 * 11 10 9 33 33 H 1.08998 * 111.00538 * 81.06505 * 11 10 9 34 34 H 1.08993 * 110.71608 * 277.14058 * 12 11 10 35 35 H 1.08991 * 110.87185 * 153.93255 * 12 11 10 36 36 H 1.08996 * 109.46910 * 58.10196 * 15 13 9 37 37 H 1.08992 * 109.47276 * 298.09955 * 15 13 9 38 38 H 0.96998 * 120.00122 * 354.93304 * 16 15 13 39 39 H 0.97003 * 119.99758 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6005 -0.6647 0.0060 6 6 2.3221 -1.0955 0.0006 7 6 1.8844 -2.4953 0.0015 8 8 0.6969 -2.7614 0.0019 9 7 2.7973 -3.4868 0.0021 10 6 4.2575 -3.3101 0.1014 11 6 4.8559 -4.5830 -0.5478 12 6 3.8518 -5.6710 -0.0835 13 6 2.5017 -4.9236 -0.0969 14 1 1.9716 -5.1323 -1.0261 15 6 1.6517 -5.3634 1.0970 16 7 1.3246 -6.7854 0.9660 17 6 0.6560 -7.4296 1.9725 18 1 0.3701 -6.8896 2.8630 19 6 0.3455 -8.7768 1.8481 20 7 0.6943 -9.4352 0.7631 21 14 -0.5661 -9.6559 3.2214 22 1 -0.7742 -11.0776 2.8466 23 1 0.2338 -9.5858 4.4706 24 1 -1.8820 -9.0031 3.4391 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0005 29 1 4.5046 1.2917 0.0011 30 1 4.5607 -3.2387 1.1459 31 1 4.5719 -2.4215 -0.4459 32 1 5.8558 -4.7845 -0.1633 33 1 4.8664 -4.4993 -1.6345 34 1 4.0929 -6.0140 0.9226 35 1 3.8360 -6.5080 -0.7814 36 1 0.7316 -4.7797 1.1225 37 1 2.2098 -5.2024 2.0193 38 1 1.5816 -7.2705 0.1664 39 1 1.1679 -8.9788 0.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733331788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:09 Heat of formation + Delta-G solvation = -3.362200 kcal Electronic energy + Delta-G solvation = -21873.254599 eV Core-core repulsion = 18590.064550 eV Total energy + Delta-G solvation = -3283.190049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.86287 -39.90062 -37.50527 -34.78738 -34.22055 -31.95873 -31.33877 -30.38044 -28.55111 -27.61960 -24.93209 -23.76539 -22.46953 -21.97623 -21.55867 -20.19034 -19.24073 -17.67168 -17.09649 -16.70672 -16.37267 -16.05020 -15.22378 -14.37378 -14.18283 -14.02300 -13.66477 -13.54993 -13.31730 -13.22654 -13.16242 -12.93550 -12.71313 -12.54465 -12.16473 -11.87070 -11.61863 -11.11976 -10.78545 -10.60979 -10.55442 -10.46502 -9.98287 -9.90942 -9.85854 -9.16737 -8.85265 -8.79172 -8.44418 -6.93064 -6.04328 -3.03079 0.96959 2.17238 2.52928 3.07112 3.20381 3.56479 3.60734 3.77724 4.36407 4.58513 4.61368 4.64454 4.74748 4.91842 4.99710 5.30263 5.35050 5.35261 5.40096 5.52705 5.64907 5.66300 5.69605 5.76814 5.86975 5.89587 5.93279 6.00862 6.02907 6.09250 6.28489 6.35030 6.46465 6.71260 6.79822 6.96721 7.53411 7.87770 8.13562 8.81872 9.29058 10.15196 10.30434 11.44480 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.004249 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.098638 B = 6588.755156 C = 7408.967323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.091 4.091 3 C -0.224 4.224 4 C -0.015 4.015 5 O -0.161 6.161 6 C -0.073 4.073 7 C 0.611 3.389 8 O -0.506 6.506 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.134 4.134 12 C -0.121 4.121 13 C 0.130 3.870 14 H 0.077 0.923 15 C 0.151 3.849 16 N -0.740 5.740 17 C -0.326 4.326 18 H 0.063 0.937 19 C -0.046 4.046 20 N -0.946 5.946 21 Si 1.081 2.919 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.295 1.295 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.022 0.978 38 H 0.366 0.634 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 21.231 -3.635 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.243 4.243 4 C -0.084 4.084 5 O -0.056 6.056 6 C -0.125 4.125 7 C 0.399 3.601 8 O -0.383 6.383 9 N -0.336 5.336 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.159 4.159 13 C 0.028 3.972 14 H 0.095 0.905 15 C 0.022 3.978 16 N -0.386 5.386 17 C -0.457 4.457 18 H 0.081 0.919 19 C -0.243 4.243 20 N -0.592 5.592 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.224 0.776 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.199 0.801 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.011 19.578 -2.937 21.751 hybrid contribution 0.814 1.781 -0.631 2.057 sum 9.825 21.359 -3.568 23.779 Atomic orbital electron populations 1.20434 0.88172 1.03587 1.03029 1.20643 0.97732 0.90912 1.00115 1.21725 0.92479 1.00044 1.10019 1.24351 0.99862 0.81084 1.03152 1.84175 1.28406 1.22277 1.70764 1.21932 0.81346 0.94696 1.14550 1.16185 0.85054 0.81180 0.77703 1.90900 1.15134 1.81753 1.50519 1.48361 1.06955 1.06557 1.71765 1.22453 0.79613 0.99144 1.01181 1.22804 0.99192 0.94335 1.00824 1.22674 0.92516 0.97265 1.03430 1.21884 0.96939 0.77910 1.00494 0.90506 1.20919 0.96408 0.86888 0.93547 1.42205 1.70144 1.04942 1.21289 1.20019 1.32510 0.95161 0.97999 0.91863 1.25760 1.02044 0.93504 1.03002 1.70887 1.42708 1.38057 1.07516 0.83233 0.75515 0.76160 0.73943 1.21035 1.22334 1.22274 0.90731 0.91605 0.89337 0.82826 0.77556 0.91210 0.89853 0.89792 0.90747 0.89754 0.89825 0.94558 0.96019 0.80079 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.82 36.01 0.35 -0.80 16 2 C -0.09 -1.16 6.20 -104.43 -0.65 -1.81 16 3 C -0.22 -2.13 10.83 -39.88 -0.43 -2.57 16 4 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 5 O -0.16 -1.86 7.77 5.01 0.04 -1.82 16 6 C -0.07 -1.05 6.94 -36.80 -0.26 -1.31 16 7 C 0.61 10.54 7.64 -12.86 -0.10 10.44 16 8 O -0.51 -10.32 13.57 5.19 0.07 -10.25 16 9 N -0.60 -9.69 3.06 -164.55 -0.50 -10.19 16 10 C 0.10 1.21 6.33 -2.53 -0.02 1.19 16 11 C -0.13 -1.49 7.09 -24.58 -0.17 -1.67 16 12 C -0.12 -1.82 6.08 -24.89 -0.15 -1.97 16 13 C 0.13 2.35 2.98 -66.95 -0.20 2.15 16 14 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 15 C 0.15 3.42 5.62 -4.04 -0.02 3.39 16 16 N -0.74 -19.66 5.37 -59.91 -0.32 -19.98 16 17 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 18 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 20 N -0.95 -29.87 13.70 55.49 0.76 -29.11 16 21 Si 1.08 26.79 29.92 -169.99 -5.09 21.71 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.27 6.44 -51.93 -0.33 0.93 16 28 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.38 7.82 -51.93 -0.41 0.98 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.92 6.64 -51.93 -0.34 0.58 16 37 H 0.02 0.51 8.09 -51.93 -0.42 0.08 16 38 H 0.37 9.70 6.35 -40.82 -0.26 9.44 16 39 H 0.25 7.86 6.77 -40.82 -0.28 7.58 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -35.39 320.78 -7.10 -42.49 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.36 Total: 6.32 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.53 Total: -4.01 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.07 Total: -59.28 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.11 Total: -12.07 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -5.09 Total: 21.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.39 -7.10 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733331788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.127 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds