Wall clock time and date at job start Tue Mar 31 2020 01:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40374 * 126.64576 * 2 1 4 4 C 1.35132 * 107.11392 * 179.97438 * 3 2 1 5 5 O 1.33931 * 108.76580 * 359.77103 * 4 3 2 6 6 C 1.34907 * 109.38666 * 0.37556 * 5 4 3 7 7 C 1.46662 * 125.98491 * 179.88273 * 6 5 4 8 8 O 1.21694 * 119.99512 * 179.69284 * 7 6 5 9 9 N 1.34777 * 120.00083 * 359.70104 * 7 6 5 10 10 C 1.47420 * 125.64625 * 4.76548 * 9 7 6 11 11 C 1.54911 * 104.82931 * 204.15166 * 10 9 7 12 12 C 1.55165 * 101.58387 * 322.99090 * 11 10 9 13 13 C 1.47020 * 125.64512 * 184.79535 * 9 7 6 14 14 H 1.08999 * 110.01584 * 59.42490 * 13 9 7 15 15 C 1.53008 * 109.88047 * 298.32884 * 13 9 7 16 16 N 1.46503 * 109.46899 * 178.09795 * 15 13 9 17 17 C 1.36929 * 119.99747 * 174.93396 * 16 15 13 18 18 H 1.07996 * 120.00680 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00312 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00085 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47251 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47281 * 300.00550 * 21 19 17 24 24 H 1.48501 * 109.46934 * 60.00231 * 21 19 17 25 25 H 1.09004 * 109.47098 * 270.04098 * 1 2 3 26 26 H 1.09000 * 109.47062 * 30.04444 * 1 2 3 27 27 H 1.08996 * 109.46862 * 150.04424 * 1 2 3 28 28 H 1.07994 * 126.43990 * 359.96635 * 3 2 1 29 29 H 1.07996 * 125.61359 * 180.02562 * 4 3 2 30 30 H 1.08998 * 110.36579 * 85.31999 * 10 9 7 31 31 H 1.09001 * 110.46192 * 323.03428 * 10 9 7 32 32 H 1.09005 * 111.00723 * 204.91883 * 11 10 9 33 33 H 1.08998 * 111.00538 * 81.06505 * 11 10 9 34 34 H 1.08993 * 110.71608 * 277.14058 * 12 11 10 35 35 H 1.08991 * 110.87185 * 153.93255 * 12 11 10 36 36 H 1.08996 * 109.46910 * 58.10196 * 15 13 9 37 37 H 1.08992 * 109.47276 * 298.09955 * 15 13 9 38 38 H 0.96998 * 120.00122 * 354.93304 * 16 15 13 39 39 H 0.97003 * 119.99758 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6005 -0.6647 0.0060 6 6 2.3221 -1.0955 0.0006 7 6 1.8844 -2.4953 0.0015 8 8 0.6969 -2.7614 0.0019 9 7 2.7973 -3.4868 0.0021 10 6 4.2575 -3.3101 0.1014 11 6 4.8559 -4.5830 -0.5478 12 6 3.8518 -5.6710 -0.0835 13 6 2.5017 -4.9236 -0.0969 14 1 1.9716 -5.1323 -1.0261 15 6 1.6517 -5.3634 1.0970 16 7 1.3246 -6.7854 0.9660 17 6 0.6560 -7.4296 1.9725 18 1 0.3701 -6.8896 2.8630 19 6 0.3455 -8.7768 1.8481 20 7 0.6943 -9.4352 0.7631 21 14 -0.5661 -9.6559 3.2214 22 1 -0.7742 -11.0776 2.8466 23 1 0.2338 -9.5858 4.4706 24 1 -1.8820 -9.0031 3.4391 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0005 29 1 4.5046 1.2917 0.0011 30 1 4.5607 -3.2387 1.1459 31 1 4.5719 -2.4215 -0.4459 32 1 5.8558 -4.7845 -0.1633 33 1 4.8664 -4.4993 -1.6345 34 1 4.0929 -6.0140 0.9226 35 1 3.8360 -6.5080 -0.7814 36 1 0.7316 -4.7797 1.1225 37 1 2.2098 -5.2024 2.0193 38 1 1.5816 -7.2705 0.1664 39 1 1.1679 -8.9788 0.0501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733331788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:07 Heat of formation + Delta-G solvation = -27.674759 kcal Electronic energy + Delta-G solvation = -21874.308870 eV Core-core repulsion = 18590.064550 eV Total energy + Delta-G solvation = -3284.244320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.72215 -41.18904 -38.84250 -36.81079 -35.13374 -33.66535 -32.80563 -31.32012 -30.16637 -28.64035 -26.59637 -25.34643 -24.22735 -22.96077 -22.52823 -21.39987 -20.40463 -19.48676 -18.55072 -17.91581 -17.40850 -17.13472 -16.71513 -15.86013 -15.73172 -15.51669 -15.32484 -15.09538 -14.77379 -14.23713 -14.13152 -13.93307 -13.84585 -13.68599 -13.49787 -13.19170 -12.82204 -12.75864 -12.62127 -12.15921 -12.02711 -11.89234 -11.75235 -11.37426 -11.27147 -10.95637 -10.69925 -10.00066 -9.54003 -9.19053 -8.46268 -5.40342 -0.01533 1.39372 1.49169 1.56025 1.66319 1.83554 1.98296 2.05113 2.68169 3.32054 3.38105 3.49873 3.71820 3.76451 3.78529 3.89110 3.92729 4.14374 4.18514 4.36909 4.50063 4.58435 4.59848 4.66088 4.68986 4.78556 4.82331 4.90132 4.98681 5.02310 5.07293 5.17820 5.23622 5.27972 5.44789 5.50888 5.87846 6.32468 6.44320 6.85903 7.02241 7.90452 8.03317 9.05760 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.004249 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.098638 B = 6588.755156 C = 7408.967323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.094 4.094 3 C -0.234 4.234 4 C 0.016 3.984 5 O -0.164 6.164 6 C -0.113 4.113 7 C 0.601 3.399 8 O -0.557 6.557 9 N -0.606 5.606 10 C 0.096 3.904 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.137 3.863 14 H 0.059 0.941 15 C 0.159 3.841 16 N -0.747 5.747 17 C -0.342 4.342 18 H 0.058 0.942 19 C -0.096 4.096 20 N -0.968 5.968 21 Si 1.130 2.870 22 H -0.286 1.286 23 H -0.275 1.275 24 H -0.282 1.282 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.185 0.815 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.004 0.996 37 H 0.017 0.983 38 H 0.364 0.636 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 23.533 -3.367 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.253 4.253 4 C -0.053 4.053 5 O -0.060 6.060 6 C -0.164 4.164 7 C 0.392 3.608 8 O -0.438 6.438 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.153 4.153 12 C -0.155 4.155 13 C 0.034 3.966 14 H 0.077 0.923 15 C 0.031 3.969 16 N -0.392 5.392 17 C -0.473 4.473 18 H 0.076 0.924 19 C -0.288 4.288 20 N -0.615 5.615 21 Si 0.954 3.046 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.208 1.208 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.202 0.798 29 H 0.277 0.723 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.197 0.803 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.380 21.924 -2.676 24.846 hybrid contribution 0.110 1.234 -0.722 1.434 sum 11.490 23.158 -3.398 26.074 Atomic orbital electron populations 1.20418 0.88561 1.03429 1.02852 1.21001 0.98007 0.92011 0.98718 1.22080 0.92265 1.00469 1.10454 1.25455 1.01376 0.79823 0.98617 1.84139 1.26808 1.24051 1.70959 1.21330 0.82939 0.93249 1.18877 1.16708 0.84656 0.82700 0.76765 1.90858 1.17157 1.82935 1.52845 1.48478 1.08727 1.05237 1.71336 1.22715 0.77039 1.00609 1.02125 1.22819 0.99295 0.91528 1.01689 1.22594 0.91868 0.98215 1.02854 1.21624 0.97815 0.80080 0.97130 0.92307 1.20855 0.95774 0.84560 0.95697 1.42302 1.69930 1.06314 1.20663 1.20329 1.32741 0.95749 0.98496 0.92431 1.27291 1.02460 0.94528 1.04514 1.70991 1.43934 1.38394 1.08211 0.82619 0.75138 0.74878 0.71996 1.21138 1.20052 1.20838 0.90926 0.88731 0.92424 0.79807 0.72310 0.90600 0.87746 0.86591 0.89347 0.91186 0.89827 0.97763 0.96530 0.80303 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.82 71.24 0.70 -1.67 16 2 C -0.09 -2.33 6.20 -19.74 -0.12 -2.45 16 3 C -0.23 -3.64 10.83 22.07 0.24 -3.40 16 4 C 0.02 0.20 12.08 67.10 0.81 1.01 16 5 O -0.16 -3.35 7.77 -4.97 -0.04 -3.39 16 6 C -0.11 -3.19 6.94 24.07 0.17 -3.02 16 7 C 0.60 21.77 7.64 86.44 0.66 22.43 16 8 O -0.56 -24.69 13.57 -4.33 -0.06 -24.75 16 9 N -0.61 -19.91 3.06 -792.73 -2.43 -22.34 16 10 C 0.10 2.19 6.33 86.86 0.55 2.74 16 11 C -0.12 -2.31 7.09 31.99 0.23 -2.08 16 12 C -0.12 -3.52 6.08 31.79 0.19 -3.33 16 13 C 0.14 5.19 2.98 45.35 0.14 5.32 16 14 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.16 7.66 5.62 86.38 0.49 8.14 16 16 N -0.75 -41.55 5.37 -343.45 -1.84 -43.40 16 17 C -0.34 -20.91 9.99 84.03 0.84 -20.07 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.10 -5.86 5.50 84.86 0.47 -5.40 16 20 N -0.97 -62.25 13.70 21.65 0.30 -61.95 16 21 Si 1.13 54.17 29.92 68.60 2.05 56.22 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.79 6.44 -2.39 -0.02 1.77 16 28 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.26 0.21 8.06 -2.91 -0.02 0.18 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.97 5.95 -2.39 -0.01 1.96 16 32 H 0.12 1.65 8.14 -2.38 -0.02 1.64 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.31 7.82 -2.39 -0.02 2.29 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.00 0.24 6.64 -2.39 -0.02 0.23 16 37 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 38 H 0.36 20.27 6.35 -92.71 -0.59 19.68 16 39 H 0.24 15.64 6.77 -92.71 -0.63 15.01 16 Total: -1.00 -81.70 320.78 3.94 -77.75 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.62 Total: 23.62 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.35 Total: -1.77 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -3.98 Total: -127.69 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.10 Total: -28.13 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 2.05 Total: 56.22 kcal Total: -81.70 3.94 -77.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733331788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.077 kcal (2) G-P(sol) polarization free energy of solvation -81.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds