Wall clock time and date at job start Tue Mar 31 2020 00:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.65541 * 2 1 4 4 N 1.46495 * 109.47289 * 56.80385 * 3 2 1 5 5 C 1.36939 * 120.00195 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.38804 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31625 * 120.00380 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47449 * 89.99849 * 9 7 5 11 11 H 1.48507 * 109.46971 * 209.99804 * 9 7 5 12 12 H 1.48497 * 109.47068 * 329.99737 * 9 7 5 13 13 C 1.54614 * 110.74291 * 236.80607 * 2 1 3 14 14 C 1.54003 * 105.04384 * 263.51064 * 13 2 1 15 15 N 1.47486 * 107.08405 * 1.30539 * 14 13 2 16 16 C 1.34778 * 127.03004 * 154.51786 * 15 14 13 17 17 O 1.21703 * 119.99404 * 180.02562 * 16 15 14 18 18 C 1.46650 * 120.00431 * 0.02562 * 16 15 14 19 19 C 1.36548 * 125.99044 * 180.02562 * 18 16 15 20 20 C 1.40360 * 106.70846 * 180.28893 * 19 18 16 21 21 C 1.35139 * 107.11532 * 359.57258 * 20 19 18 22 22 O 1.33926 * 108.76311 * 0.43407 * 21 20 19 23 23 C 1.48117 * 105.93126 * 334.78077 * 15 14 13 24 24 H 1.09002 * 109.46875 * 183.18988 * 1 2 3 25 25 H 1.08994 * 109.47147 * 303.19276 * 1 2 3 26 26 H 1.09000 * 109.47144 * 63.19869 * 1 2 3 27 27 H 1.08999 * 109.47218 * 176.80884 * 3 2 1 28 28 H 1.09000 * 109.46828 * 296.80329 * 3 2 1 29 29 H 0.97003 * 120.00238 * 0.02562 * 4 3 2 30 30 H 0.96998 * 120.00231 * 180.02562 * 8 7 5 31 31 H 1.08991 * 110.32927 * 144.61867 * 13 2 1 32 32 H 1.09002 * 110.41453 * 22.44445 * 13 2 1 33 33 H 1.08997 * 109.91172 * 241.94093 * 14 13 2 34 34 H 1.09009 * 109.91129 * 120.66308 * 14 13 2 35 35 H 1.08002 * 126.64113 * 0.02562 * 19 18 16 36 36 H 1.08007 * 126.44102 * 179.73700 * 20 19 18 37 37 H 1.07998 * 125.61056 * 180.15550 * 21 20 19 38 38 H 1.08999 * 110.66254 * 157.51309 * 23 15 14 39 39 H 1.09003 * 110.65656 * 280.62298 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5344 2.1554 1.1558 5 6 1.8807 3.4636 1.3649 6 1 2.5489 3.9618 0.6779 7 6 1.3740 4.1492 2.4602 8 7 1.7072 5.4066 2.6615 9 14 0.2201 3.2870 3.6496 10 1 1.0115 2.6462 4.7304 11 1 -0.7131 4.2793 4.2411 12 1 -0.5556 2.2501 2.9227 13 6 2.0777 -0.7916 -1.2100 14 6 2.3764 -2.2003 -0.6640 15 7 1.9872 -2.2051 0.7586 16 6 1.6222 -3.2721 1.4967 17 8 1.3239 -3.1285 2.6678 18 6 1.5845 -4.6061 0.8886 19 6 1.2343 -5.7657 1.5189 20 6 1.3450 -6.7915 0.5673 21 6 1.7435 -6.2191 -0.5901 22 8 1.8903 -4.9028 -0.3915 23 6 2.0733 -0.7965 1.2084 24 1 -0.3633 -1.0261 0.0572 25 1 -0.3633 0.5626 0.8599 26 1 -0.3633 0.4634 -0.9173 27 1 3.1580 1.4097 0.0572 28 1 1.7643 1.9351 -0.9173 29 1 0.9346 1.7079 1.7730 30 1 1.3534 5.8856 3.4272 31 1 2.9910 -0.3287 -1.5833 32 1 1.3293 -0.8430 -2.0009 33 1 3.4404 -2.4171 -0.7586 34 1 1.7937 -2.9417 -1.2108 35 1 0.9348 -5.8732 2.5510 36 1 1.1461 -7.8407 0.7290 37 1 1.9194 -6.7383 -1.5206 38 1 1.4489 -0.6345 2.0871 39 1 3.1077 -0.5211 1.4143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733414476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:15 Heat of formation + Delta-G solvation = 2.534391 kcal Electronic energy + Delta-G solvation = -21868.349973 eV Core-core repulsion = 18585.415619 eV Total energy + Delta-G solvation = -3282.934353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.93520 -40.10644 -38.09289 -35.05791 -33.39982 -32.71320 -30.91432 -30.13340 -29.43499 -26.85282 -25.98073 -23.83928 -22.45222 -22.01229 -21.67746 -20.03516 -19.06786 -18.11386 -17.30620 -16.76630 -16.55853 -15.78798 -15.52873 -14.56387 -14.45841 -14.11860 -13.92733 -13.47241 -13.31312 -13.26448 -13.13288 -12.97976 -12.56151 -12.32810 -12.21878 -11.77192 -11.66305 -11.34548 -10.88292 -10.63280 -10.55430 -10.38348 -10.33332 -10.27974 -10.04520 -9.55239 -9.06564 -8.89224 -8.67831 -7.22317 -5.75714 -3.11328 0.84544 2.08326 2.39825 2.94130 3.05419 3.40524 3.44256 3.49019 4.23144 4.57998 4.60119 4.61295 4.62256 4.77145 4.88358 5.17976 5.28662 5.34085 5.45142 5.48336 5.55336 5.57982 5.63608 5.67699 5.81458 5.89535 5.94671 5.94844 6.03364 6.12460 6.21671 6.34789 6.50232 6.59382 6.63277 6.68597 7.38020 7.92719 7.99853 8.43268 9.22045 9.94607 10.13818 11.42651 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.004247 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.255045 B = 6591.199093 C = 7198.523832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C 0.174 3.826 4 N -0.755 5.755 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.610 5.610 16 C 0.615 3.385 17 O -0.521 6.521 18 C -0.067 4.067 19 C -0.125 4.125 20 C -0.224 4.224 21 C -0.015 4.015 22 O -0.160 6.160 23 C 0.117 3.883 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.362 0.638 30 H 0.259 0.741 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.209 0.791 38 H 0.087 0.913 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -24.629 -10.261 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 C 0.047 3.953 4 N -0.401 5.401 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.203 1.203 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.342 5.342 16 C 0.403 3.597 17 O -0.399 6.399 18 C -0.119 4.119 19 C -0.146 4.146 20 C -0.243 4.243 21 C -0.084 4.084 22 O -0.055 6.055 23 C -0.004 4.004 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.195 0.805 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.329 -24.153 -9.817 26.074 hybrid contribution -0.867 -0.801 0.925 1.500 sum -0.537 -24.954 -8.892 26.497 Atomic orbital electron populations 1.21743 0.93551 1.00807 1.02841 1.21875 0.96594 0.96224 0.93842 1.20604 0.96103 0.87286 0.91340 1.42764 1.57401 1.11594 1.28363 1.19038 1.23930 0.86068 1.08360 0.89167 1.24649 1.00148 0.95765 0.98404 1.69699 1.48531 1.09126 1.30854 0.86622 0.81459 0.78864 0.82014 1.20894 1.21662 1.20330 1.22577 1.02271 0.93486 0.97733 1.22236 1.00374 0.98666 0.80861 1.48694 1.65431 1.07900 1.12158 1.16150 0.77820 0.80717 0.85025 1.90913 1.50183 1.83892 1.14907 1.22106 1.10840 0.95982 0.83007 1.21981 1.00715 0.90486 1.01412 1.21857 1.08244 1.01040 0.93208 1.24435 1.02358 0.80778 1.00862 1.84176 1.67240 1.25727 1.28371 1.22616 1.02222 0.77440 0.98140 0.93479 0.91783 0.92146 0.95107 0.94903 0.80480 0.93050 0.89827 0.90297 0.91214 0.90206 0.82263 0.82675 0.77443 0.89486 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.30 37.16 0.31 -1.70 16 2 C -0.08 -1.24 0.64 -152.82 -0.10 -1.34 16 3 C 0.17 3.19 5.11 -4.04 -0.02 3.17 16 4 N -0.75 -17.63 4.96 -59.91 -0.30 -17.92 16 5 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 9 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 13 C -0.12 -1.35 6.09 -25.36 -0.15 -1.50 16 14 C 0.10 1.10 6.29 -2.98 -0.02 1.08 16 15 N -0.61 -8.62 3.19 -171.52 -0.55 -9.16 16 16 C 0.61 9.49 7.86 -12.86 -0.10 9.39 16 17 O -0.52 -9.78 17.07 5.19 0.09 -9.69 16 18 C -0.07 -0.85 6.95 -36.80 -0.26 -1.10 16 19 C -0.13 -1.38 10.62 -39.39 -0.42 -1.80 16 20 C -0.22 -1.80 10.87 -39.89 -0.43 -2.23 16 21 C -0.01 -0.10 12.08 29.63 0.36 0.25 16 22 O -0.16 -1.63 7.96 5.01 0.04 -1.59 16 23 C 0.12 1.85 5.66 -2.32 -0.01 1.83 16 24 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 25 H 0.06 1.13 6.69 -51.93 -0.35 0.78 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.57 8.11 -51.93 -0.42 0.14 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.36 8.41 4.07 -40.82 -0.17 8.24 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 32 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.79 6.22 -51.92 -0.32 0.47 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.09 1.57 7.75 -51.93 -0.40 1.16 16 39 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -34.10 321.68 -6.35 -40.45 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.44 Total: 4.87 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.10 Total: -0.89 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.07 Total: -55.84 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.13 Total: -11.29 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.10 -6.35 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733414476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.989 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds