Wall clock time and date at job start Tue Mar 31 2020 00:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.65541 * 2 1 4 4 N 1.46495 * 109.47289 * 56.80385 * 3 2 1 5 5 C 1.36939 * 120.00195 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.38804 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31625 * 120.00380 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47449 * 89.99849 * 9 7 5 11 11 H 1.48507 * 109.46971 * 209.99804 * 9 7 5 12 12 H 1.48497 * 109.47068 * 329.99737 * 9 7 5 13 13 C 1.54614 * 110.74291 * 236.80607 * 2 1 3 14 14 C 1.54003 * 105.04384 * 263.51064 * 13 2 1 15 15 N 1.47486 * 107.08405 * 1.30539 * 14 13 2 16 16 C 1.34778 * 127.03004 * 154.51786 * 15 14 13 17 17 O 1.21703 * 119.99404 * 180.02562 * 16 15 14 18 18 C 1.46650 * 120.00431 * 0.02562 * 16 15 14 19 19 C 1.36548 * 125.99044 * 180.02562 * 18 16 15 20 20 C 1.40360 * 106.70846 * 180.28893 * 19 18 16 21 21 C 1.35139 * 107.11532 * 359.57258 * 20 19 18 22 22 O 1.33926 * 108.76311 * 0.43407 * 21 20 19 23 23 C 1.48117 * 105.93126 * 334.78077 * 15 14 13 24 24 H 1.09002 * 109.46875 * 183.18988 * 1 2 3 25 25 H 1.08994 * 109.47147 * 303.19276 * 1 2 3 26 26 H 1.09000 * 109.47144 * 63.19869 * 1 2 3 27 27 H 1.08999 * 109.47218 * 176.80884 * 3 2 1 28 28 H 1.09000 * 109.46828 * 296.80329 * 3 2 1 29 29 H 0.97003 * 120.00238 * 0.02562 * 4 3 2 30 30 H 0.96998 * 120.00231 * 180.02562 * 8 7 5 31 31 H 1.08991 * 110.32927 * 144.61867 * 13 2 1 32 32 H 1.09002 * 110.41453 * 22.44445 * 13 2 1 33 33 H 1.08997 * 109.91172 * 241.94093 * 14 13 2 34 34 H 1.09009 * 109.91129 * 120.66308 * 14 13 2 35 35 H 1.08002 * 126.64113 * 0.02562 * 19 18 16 36 36 H 1.08007 * 126.44102 * 179.73700 * 20 19 18 37 37 H 1.07998 * 125.61056 * 180.15550 * 21 20 19 38 38 H 1.08999 * 110.66254 * 157.51309 * 23 15 14 39 39 H 1.09003 * 110.65656 * 280.62298 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5344 2.1554 1.1558 5 6 1.8807 3.4636 1.3649 6 1 2.5489 3.9618 0.6779 7 6 1.3740 4.1492 2.4602 8 7 1.7072 5.4066 2.6615 9 14 0.2201 3.2870 3.6496 10 1 1.0115 2.6462 4.7304 11 1 -0.7131 4.2793 4.2411 12 1 -0.5556 2.2501 2.9227 13 6 2.0777 -0.7916 -1.2100 14 6 2.3764 -2.2003 -0.6640 15 7 1.9872 -2.2051 0.7586 16 6 1.6222 -3.2721 1.4967 17 8 1.3239 -3.1285 2.6678 18 6 1.5845 -4.6061 0.8886 19 6 1.2343 -5.7657 1.5189 20 6 1.3450 -6.7915 0.5673 21 6 1.7435 -6.2191 -0.5901 22 8 1.8903 -4.9028 -0.3915 23 6 2.0733 -0.7965 1.2084 24 1 -0.3633 -1.0261 0.0572 25 1 -0.3633 0.5626 0.8599 26 1 -0.3633 0.4634 -0.9173 27 1 3.1580 1.4097 0.0572 28 1 1.7643 1.9351 -0.9173 29 1 0.9346 1.7079 1.7730 30 1 1.3534 5.8856 3.4272 31 1 2.9910 -0.3287 -1.5833 32 1 1.3293 -0.8430 -2.0009 33 1 3.4404 -2.4171 -0.7586 34 1 1.7937 -2.9417 -1.2108 35 1 0.9348 -5.8732 2.5510 36 1 1.1461 -7.8407 0.7290 37 1 1.9194 -6.7383 -1.5206 38 1 1.4489 -0.6345 2.0871 39 1 3.1077 -0.5211 1.4143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733414476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:14 Heat of formation + Delta-G solvation = -20.933500 kcal Electronic energy + Delta-G solvation = -21869.367617 eV Core-core repulsion = 18585.415619 eV Total energy + Delta-G solvation = -3283.951997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65962 -41.23377 -39.31871 -36.69114 -34.51481 -34.00353 -32.72577 -30.98221 -30.56836 -28.09184 -27.50615 -25.19263 -23.68780 -23.02425 -22.68229 -20.94422 -20.46762 -19.69489 -18.55094 -17.64351 -17.54719 -16.87396 -16.59448 -16.46329 -15.67090 -15.64384 -15.16775 -14.82050 -14.68592 -14.29257 -14.02982 -13.97411 -13.74976 -13.64250 -13.52438 -13.28218 -12.97671 -12.86909 -12.61656 -12.22341 -11.95876 -11.76927 -11.64838 -11.50196 -11.44581 -11.05886 -11.00129 -10.00503 -9.58476 -9.28650 -8.04265 -5.35682 -0.00004 1.34081 1.36758 1.41951 1.42110 1.51359 2.02659 2.04991 2.44942 3.25452 3.29062 3.55521 3.62500 3.76281 3.91833 3.94441 4.10950 4.24424 4.27286 4.27495 4.52331 4.61281 4.66237 4.71464 4.79823 4.89446 4.92072 4.97996 5.01333 5.03260 5.08174 5.22669 5.27701 5.38822 5.42455 5.76361 5.87045 6.20654 6.33182 6.82179 7.07233 7.84676 8.01138 9.17471 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.004247 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.255045 B = 6591.199093 C = 7198.523832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C 0.171 3.829 4 N -0.759 5.759 5 C -0.226 4.226 6 H 0.065 0.935 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.941 3.059 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.258 1.258 13 C -0.111 4.111 14 C 0.102 3.898 15 N -0.609 5.609 16 C 0.608 3.392 17 O -0.573 6.573 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.234 4.234 21 C 0.013 3.987 22 O -0.163 6.163 23 C 0.115 3.885 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.363 0.637 30 H 0.257 0.743 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.184 0.816 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -28.031 -12.842 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C 0.045 3.955 4 N -0.405 5.405 5 C -0.357 4.357 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.769 3.231 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.183 1.183 13 C -0.150 4.150 14 C -0.019 4.019 15 N -0.340 5.340 16 C 0.399 3.601 17 O -0.455 6.455 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.253 4.253 21 C -0.056 4.056 22 O -0.058 6.058 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.196 0.804 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.171 0.829 36 H 0.201 0.799 37 H 0.275 0.725 38 H 0.074 0.926 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.188 -27.601 -12.465 30.286 hybrid contribution -0.741 0.138 1.596 1.765 sum -0.553 -27.464 -10.869 29.542 Atomic orbital electron populations 1.21700 0.93727 1.00937 1.02169 1.21735 0.96319 0.94213 0.95514 1.20804 0.96242 0.88999 0.89482 1.42834 1.57475 1.10207 1.29980 1.19074 1.21932 0.87730 1.06980 0.91708 1.25348 1.02584 0.96479 1.00620 1.69852 1.50689 1.10910 1.31862 0.85627 0.79592 0.78054 0.79821 1.21005 1.21900 1.18320 1.22588 1.03450 0.92644 0.96273 1.22442 1.01675 0.98961 0.78823 1.48740 1.64980 1.06810 1.13465 1.16566 0.76995 0.81931 0.84653 1.90865 1.52619 1.84945 1.17082 1.21529 1.14580 0.94796 0.84519 1.22236 0.99531 0.91263 1.01816 1.22204 1.08609 1.01824 0.92651 1.25472 0.98606 0.79387 1.02156 1.84146 1.67331 1.27406 1.26939 1.22469 1.01384 0.79188 0.97648 0.92658 0.94743 0.90704 0.94656 0.94227 0.80382 0.93371 0.88227 0.88096 0.89571 0.88554 0.82944 0.79902 0.72533 0.92571 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.30 71.98 0.60 -3.11 16 2 C -0.08 -2.14 0.64 -51.09 -0.03 -2.18 16 3 C 0.17 6.07 5.11 86.38 0.44 6.51 16 4 N -0.76 -35.41 4.96 -343.46 -1.70 -37.11 16 5 C -0.23 -12.92 10.47 84.03 0.88 -12.04 16 6 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 7 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 8 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16 9 Si 0.94 47.58 27.74 68.60 1.90 49.49 16 10 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 12 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 13 C -0.11 -2.07 6.09 31.48 0.19 -1.87 16 14 C 0.10 1.91 6.29 86.53 0.54 2.45 16 15 N -0.61 -16.71 3.19 -814.79 -2.60 -19.31 16 16 C 0.61 18.90 7.86 86.44 0.68 19.58 16 17 O -0.57 -22.55 17.07 -4.36 -0.07 -22.63 16 18 C -0.10 -2.46 6.95 24.07 0.17 -2.29 16 19 C -0.13 -2.65 10.62 22.39 0.24 -2.41 16 20 C -0.23 -2.93 10.87 22.07 0.24 -2.69 16 21 C 0.01 0.13 12.08 67.11 0.81 0.94 16 22 O -0.16 -2.77 7.96 -4.99 -0.04 -2.81 16 23 C 0.12 3.64 5.66 86.61 0.49 4.13 16 24 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 25 H 0.03 1.19 6.69 -2.39 -0.02 1.17 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.36 16.86 4.07 -92.71 -0.38 16.48 16 30 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.10 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.53 6.22 -2.38 -0.01 1.51 16 35 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.26 -0.32 8.06 -2.91 -0.02 -0.34 16 38 H 0.06 2.10 7.75 -2.39 -0.02 2.08 16 39 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 Total: -1.00 -77.84 321.68 4.12 -73.72 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.62 Total: 18.21 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.71 Total: 3.95 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -4.00 Total: -119.92 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.11 Total: -25.44 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.90 Total: 49.49 kcal Total: -77.84 4.12 -73.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733414476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.786 kcal (2) G-P(sol) polarization free energy of solvation -77.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds