Wall clock time and date at job start Mon Mar 30 2020 23:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37980 * 120.07022 * 2 1 4 4 C 1.38341 * 120.14097 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29644 * 359.97438 * 4 3 2 6 6 C 1.37941 * 120.13946 * 0.02562 * 5 4 3 7 7 C 1.39548 * 120.07577 * 179.97438 * 2 1 3 8 8 C 1.47852 * 120.14202 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99954 * 353.77425 * 8 7 2 10 10 N 1.34780 * 120.00016 * 173.78407 * 8 7 2 11 11 C 1.46490 * 120.00243 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47336 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47823 * 295.00014 * 12 11 10 14 14 C 1.53003 * 109.47436 * 174.99714 * 12 11 10 15 15 O 1.42894 * 109.47414 * 305.00732 * 14 12 11 16 16 N 1.46503 * 109.47142 * 55.00061 * 12 11 10 17 17 C 1.36937 * 120.00269 * 204.99501 * 16 12 11 18 18 H 1.07991 * 119.99775 * 0.02562 * 17 16 12 19 19 C 1.38807 * 119.99986 * 179.97438 * 17 16 12 20 20 N 1.31625 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47271 * 60.00432 * 21 19 17 23 23 H 1.48499 * 109.47067 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47289 * 300.00012 * 21 19 17 25 25 H 1.08999 * 109.47296 * 263.44278 * 1 2 3 26 26 H 1.09003 * 109.47031 * 23.44256 * 1 2 3 27 27 H 1.09000 * 109.47089 * 143.44320 * 1 2 3 28 28 H 1.07999 * 119.93146 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.85029 * 180.02562 * 4 3 2 30 30 H 1.07991 * 119.92800 * 180.27743 * 5 4 3 31 31 H 1.08002 * 120.06815 * 180.02562 * 6 5 4 32 32 H 0.97005 * 119.99596 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47061 * 299.99998 * 11 10 8 34 34 H 1.09004 * 109.47423 * 59.99750 * 11 10 8 35 35 H 1.09008 * 109.47002 * 65.00166 * 14 12 11 36 36 H 1.08990 * 109.47498 * 184.99823 * 14 12 11 37 37 H 0.96700 * 114.00376 * 179.97438 * 15 14 12 38 38 H 0.97006 * 119.99350 * 25.00231 * 16 12 11 39 39 H 0.97000 * 120.00078 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0019 0.0016 6 6 3.6022 -1.1988 0.0016 7 6 2.2063 -1.2076 0.0005 8 6 1.4720 -2.4908 0.0005 9 8 0.2618 -2.4985 0.1142 10 7 2.1444 -3.6521 -0.1253 11 6 1.4169 -4.9236 -0.1248 12 6 2.4081 -6.0785 -0.2811 13 1 2.8839 -6.0190 -1.2599 14 6 1.6643 -7.4096 -0.1556 15 8 0.9452 -7.4390 1.0788 16 7 3.4301 -5.9898 0.7649 17 6 4.6644 -6.5482 0.5653 18 1 4.8846 -7.0535 -0.3633 19 6 5.6328 -6.4636 1.5561 20 7 5.3646 -5.8472 2.6877 21 14 7.3168 -7.2247 1.2835 22 1 7.9583 -6.5967 0.1005 23 1 8.1621 -6.9991 2.4835 24 1 7.1688 -8.6838 1.0501 25 1 -0.3634 -0.1174 1.0209 26 1 -0.3633 0.9429 -0.4088 27 1 -0.3633 -0.8255 -0.6121 28 1 1.6584 2.1294 -0.0004 29 1 4.1182 2.1332 0.0010 30 1 5.3612 0.0101 0.0066 31 1 4.1494 -2.1300 0.0029 32 1 3.1101 -3.6459 -0.2163 33 1 0.8767 -5.0327 0.8157 34 1 0.7093 -4.9378 -0.9539 35 1 0.9656 -7.5150 -0.9857 36 1 2.3814 -8.2301 -0.1781 37 1 0.4486 -8.2557 1.2254 38 1 3.2323 -5.5356 1.5989 39 1 6.0412 -5.7885 3.3803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734358882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:43 Heat of formation + Delta-G solvation = -49.878075 kcal Electronic energy + Delta-G solvation = -21551.386113 eV Core-core repulsion = 18266.178985 eV Total energy + Delta-G solvation = -3285.207128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10258 -38.19807 -37.03078 -34.95206 -33.65416 -32.42823 -31.72020 -30.73303 -28.31686 -26.95769 -25.26225 -23.71945 -23.19734 -21.37536 -20.17320 -19.88600 -17.78764 -17.23510 -16.60980 -15.93979 -15.61995 -15.14734 -14.90398 -14.64653 -14.41146 -13.96723 -13.63540 -13.33007 -13.19604 -13.04330 -12.85626 -12.73053 -12.02112 -11.94685 -11.84762 -11.63379 -11.40319 -11.00330 -10.89081 -10.84753 -10.56199 -10.14154 -9.79510 -9.40140 -9.27178 -8.98918 -8.94249 -8.70546 -8.43465 -7.05541 -5.82692 -3.13487 0.99452 1.42179 3.14402 3.37800 3.43036 3.44511 3.61263 3.99281 4.51155 4.84040 4.91836 4.93359 4.96414 5.12912 5.34891 5.40654 5.50798 5.53697 5.57090 5.72750 5.87416 5.90638 5.95059 5.98505 6.03132 6.05186 6.33121 6.36029 6.38376 6.49575 6.50773 6.67342 6.75102 6.95964 6.96843 7.60419 7.98312 8.20573 8.34094 8.61468 9.46235 10.01492 10.38207 11.38643 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.005363 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.182976 B = 5220.111861 C = 6754.288487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.095 4.095 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.135 4.135 8 C 0.553 3.447 9 O -0.546 6.546 10 N -0.707 5.707 11 C 0.119 3.881 12 C 0.165 3.835 13 H 0.065 0.935 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.713 5.713 17 C -0.250 4.250 18 H 0.070 0.930 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.048 0.952 37 H 0.364 0.636 38 H 0.389 0.611 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 9.478 -7.496 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.114 4.114 5 C -0.153 4.153 6 C -0.094 4.094 7 C -0.138 4.138 8 C 0.340 3.660 9 O -0.426 6.426 10 N -0.359 5.359 11 C -0.005 4.005 12 C 0.054 3.946 13 H 0.083 0.917 14 C -0.022 4.022 15 O -0.363 6.363 16 N -0.355 5.355 17 C -0.381 4.381 18 H 0.088 0.912 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.208 0.792 38 H 0.224 0.776 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.484 9.963 -7.400 14.002 hybrid contribution 1.341 -1.034 0.153 1.700 sum -5.143 8.929 -7.247 12.597 Atomic orbital electron populations 1.21062 0.90211 1.02598 1.03644 1.20041 0.96789 0.91539 0.94459 1.21004 0.94254 0.97316 1.03030 1.21303 0.94243 0.98155 0.97659 1.21101 1.00277 0.92157 1.01784 1.21500 0.93112 0.99133 0.95652 1.19887 0.93671 0.93407 1.06858 1.18234 0.87039 0.83834 0.76856 1.90672 1.13778 1.87372 1.50823 1.45940 1.11831 1.05476 1.72647 1.21552 0.94513 0.82091 1.02354 1.20602 0.89204 0.90491 0.94350 0.91677 1.23023 0.93673 1.00861 0.84594 1.86571 1.67226 1.42138 1.40387 1.42376 1.09573 1.67060 1.16488 1.19170 0.88965 1.29540 1.00405 0.91247 1.24743 0.98393 1.00970 0.96254 1.69672 1.34191 1.47056 1.06325 0.86307 0.84213 0.78994 0.76820 1.21234 1.21700 1.21332 0.90812 0.92874 0.88604 0.85742 0.85905 0.85484 0.84881 0.75442 0.90488 0.92061 0.95531 0.93330 0.79162 0.77650 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.73 36.01 0.31 -1.28 16 2 C -0.03 -0.39 5.91 -104.23 -0.62 -1.00 16 3 C -0.14 -1.64 9.66 -39.64 -0.38 -2.02 16 4 C -0.10 -1.07 10.04 -39.49 -0.40 -1.47 16 5 C -0.14 -1.69 10.03 -39.64 -0.40 -2.09 16 6 C -0.08 -1.10 9.52 -39.19 -0.37 -1.48 16 7 C -0.14 -2.15 5.87 -104.97 -0.62 -2.77 16 8 C 0.55 9.93 7.70 -12.32 -0.09 9.83 16 9 O -0.55 -10.76 13.35 5.32 0.07 -10.69 16 10 N -0.71 -12.55 5.34 -61.26 -0.33 -12.87 16 11 C 0.12 2.15 5.12 -4.05 -0.02 2.13 16 12 C 0.16 3.13 2.84 -67.93 -0.19 2.93 16 13 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 14 C 0.06 1.04 6.86 37.16 0.25 1.29 16 15 O -0.56 -10.02 12.64 -35.23 -0.45 -10.47 16 16 N -0.71 -16.89 4.51 -53.43 -0.24 -17.14 16 17 C -0.25 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 21 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.56 8.04 -51.93 -0.42 0.15 16 27 H 0.10 1.46 5.85 -51.93 -0.30 1.16 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.97 6.46 -52.49 -0.34 1.63 16 32 H 0.41 7.23 6.21 -40.82 -0.25 6.97 16 33 H 0.08 1.56 7.40 -51.93 -0.38 1.18 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.36 4.69 9.12 45.56 0.42 5.10 16 38 H 0.39 10.29 7.80 -40.82 -0.32 9.97 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -31.46 329.32 -7.57 -39.03 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -4.53 Total: 19.90 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.77 Total: -2.84 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.16 Total: -56.36 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.37 Total: -21.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.46 -7.57 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734358882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.850 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds