Wall clock time and date at job start Mon Mar 30 2020 23:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37980 * 120.07022 * 2 1 4 4 C 1.38341 * 120.14097 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29644 * 359.97438 * 4 3 2 6 6 C 1.37941 * 120.13946 * 0.02562 * 5 4 3 7 7 C 1.39548 * 120.07577 * 179.97438 * 2 1 3 8 8 C 1.47852 * 120.14202 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99954 * 353.77425 * 8 7 2 10 10 N 1.34780 * 120.00016 * 173.78407 * 8 7 2 11 11 C 1.46490 * 120.00243 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47336 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47823 * 295.00014 * 12 11 10 14 14 C 1.53003 * 109.47436 * 174.99714 * 12 11 10 15 15 O 1.42894 * 109.47414 * 305.00732 * 14 12 11 16 16 N 1.46503 * 109.47142 * 55.00061 * 12 11 10 17 17 C 1.36937 * 120.00269 * 204.99501 * 16 12 11 18 18 H 1.07991 * 119.99775 * 0.02562 * 17 16 12 19 19 C 1.38807 * 119.99986 * 179.97438 * 17 16 12 20 20 N 1.31625 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47271 * 60.00432 * 21 19 17 23 23 H 1.48499 * 109.47067 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47289 * 300.00012 * 21 19 17 25 25 H 1.08999 * 109.47296 * 263.44278 * 1 2 3 26 26 H 1.09003 * 109.47031 * 23.44256 * 1 2 3 27 27 H 1.09000 * 109.47089 * 143.44320 * 1 2 3 28 28 H 1.07999 * 119.93146 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.85029 * 180.02562 * 4 3 2 30 30 H 1.07991 * 119.92800 * 180.27743 * 5 4 3 31 31 H 1.08002 * 120.06815 * 180.02562 * 6 5 4 32 32 H 0.97005 * 119.99596 * 359.97438 * 10 8 7 33 33 H 1.08999 * 109.47061 * 299.99998 * 11 10 8 34 34 H 1.09004 * 109.47423 * 59.99750 * 11 10 8 35 35 H 1.09008 * 109.47002 * 65.00166 * 14 12 11 36 36 H 1.08990 * 109.47498 * 184.99823 * 14 12 11 37 37 H 0.96700 * 114.00376 * 179.97438 * 15 14 12 38 38 H 0.97006 * 119.99350 * 25.00231 * 16 12 11 39 39 H 0.97000 * 120.00078 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2813 0.0019 0.0016 6 6 3.6022 -1.1988 0.0016 7 6 2.2063 -1.2076 0.0005 8 6 1.4720 -2.4908 0.0005 9 8 0.2618 -2.4985 0.1142 10 7 2.1444 -3.6521 -0.1253 11 6 1.4169 -4.9236 -0.1248 12 6 2.4081 -6.0785 -0.2811 13 1 2.8839 -6.0190 -1.2599 14 6 1.6643 -7.4096 -0.1556 15 8 0.9452 -7.4390 1.0788 16 7 3.4301 -5.9898 0.7649 17 6 4.6644 -6.5482 0.5653 18 1 4.8846 -7.0535 -0.3633 19 6 5.6328 -6.4636 1.5561 20 7 5.3646 -5.8472 2.6877 21 14 7.3168 -7.2247 1.2835 22 1 7.9583 -6.5967 0.1005 23 1 8.1621 -6.9991 2.4835 24 1 7.1688 -8.6838 1.0501 25 1 -0.3634 -0.1174 1.0209 26 1 -0.3633 0.9429 -0.4088 27 1 -0.3633 -0.8255 -0.6121 28 1 1.6584 2.1294 -0.0004 29 1 4.1182 2.1332 0.0010 30 1 5.3612 0.0101 0.0066 31 1 4.1494 -2.1300 0.0029 32 1 3.1101 -3.6459 -0.2163 33 1 0.8767 -5.0327 0.8157 34 1 0.7093 -4.9378 -0.9539 35 1 0.9656 -7.5150 -0.9857 36 1 2.3814 -8.2301 -0.1781 37 1 0.4486 -8.2557 1.2254 38 1 3.2323 -5.5356 1.5989 39 1 6.0412 -5.7885 3.3803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734358882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:42 Heat of formation + Delta-G solvation = -73.219357 kcal Electronic energy + Delta-G solvation = -21552.398267 eV Core-core repulsion = 18266.178985 eV Total energy + Delta-G solvation = -3286.219282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34649 -39.43063 -38.49487 -36.44261 -35.33317 -33.60445 -33.23734 -32.03813 -30.01659 -28.05122 -26.60730 -25.63813 -24.37683 -22.46032 -21.63872 -21.24370 -19.47592 -18.62070 -18.16701 -17.34331 -16.81435 -16.47316 -16.31369 -15.96313 -15.82430 -15.41179 -15.17552 -14.81817 -14.63326 -14.24989 -14.14503 -14.01835 -13.61528 -13.05271 -13.01527 -12.93299 -12.73518 -12.66300 -12.58829 -12.28816 -12.01198 -11.88198 -11.72844 -10.99926 -10.73052 -10.61936 -10.14406 -9.85129 -9.61982 -9.01401 -7.89834 -5.19724 -0.09555 0.41077 1.50164 1.51923 1.58060 1.89649 2.25589 2.57905 2.88300 3.42047 3.60428 3.75230 3.85818 3.90208 3.92913 4.04140 4.17959 4.42145 4.42437 4.52319 4.55064 4.59984 4.76679 4.82133 4.86696 4.87706 4.98967 5.02218 5.21308 5.26736 5.39714 5.51292 5.51963 5.56006 5.63732 5.99400 6.28280 6.56751 7.06322 7.21130 7.36425 8.08145 8.34221 9.32736 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.005363 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.182976 B = 5220.111861 C = 6754.288487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.162 4.162 8 C 0.547 3.453 9 O -0.571 6.571 10 N -0.709 5.709 11 C 0.130 3.870 12 C 0.160 3.840 13 H 0.079 0.921 14 C 0.066 3.934 15 O -0.584 6.584 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.302 1.302 24 H -0.282 1.282 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.407 0.593 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.385 0.615 38 H 0.372 0.628 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 10.781 -8.995 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.043 4.043 3 C -0.151 4.151 4 C -0.101 4.101 5 C -0.157 4.157 6 C -0.109 4.109 7 C -0.165 4.165 8 C 0.336 3.664 9 O -0.453 6.453 10 N -0.360 5.360 11 C 0.006 3.994 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.015 4.015 15 O -0.391 6.391 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.200 1.200 23 H -0.229 1.229 24 H -0.209 1.209 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.233 0.767 38 H 0.203 0.797 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.116 11.231 -8.957 15.613 hybrid contribution 1.134 -1.387 0.565 1.879 sum -4.982 9.844 -8.392 13.862 Atomic orbital electron populations 1.20977 0.90019 1.03271 1.02728 1.20287 0.97219 0.91928 0.94908 1.21391 0.94803 0.97498 1.01370 1.21759 0.94172 0.99086 0.95119 1.21412 1.01424 0.91834 1.01012 1.21504 0.92746 0.99829 0.96871 1.19859 0.94220 0.92933 1.09489 1.18690 0.86955 0.84623 0.76097 1.90652 1.14764 1.87834 1.52046 1.45950 1.11727 1.05540 1.72737 1.21395 0.94349 0.82044 1.01615 1.20858 0.88693 0.91897 0.93455 0.90332 1.22861 0.94216 0.98688 0.85765 1.86525 1.67647 1.44004 1.40904 1.42472 1.10120 1.66893 1.16748 1.19581 0.89569 1.27694 1.00253 0.90078 1.25484 1.01923 1.02447 0.96337 1.69847 1.34957 1.49546 1.07349 0.85281 0.80157 0.78249 0.76412 1.20023 1.22866 1.20866 0.91816 0.89776 0.90969 0.82477 0.82062 0.83530 0.86156 0.75534 0.93085 0.90302 0.91578 0.94456 0.76659 0.79659 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 8.73 71.24 0.62 -2.37 16 2 C -0.04 -1.17 5.91 -19.61 -0.12 -1.29 16 3 C -0.13 -2.75 9.66 22.23 0.21 -2.53 16 4 C -0.08 -1.58 10.04 22.33 0.22 -1.35 16 5 C -0.14 -3.22 10.03 22.23 0.22 -2.99 16 6 C -0.09 -2.67 9.52 22.53 0.21 -2.46 16 7 C -0.16 -5.23 5.87 -20.09 -0.12 -5.35 16 8 C 0.55 20.37 7.70 86.79 0.67 21.04 16 9 O -0.57 -23.33 13.35 -3.88 -0.05 -23.38 16 10 N -0.71 -25.96 5.34 -465.99 -2.49 -28.45 16 11 C 0.13 4.75 5.12 86.38 0.44 5.20 16 12 C 0.16 6.01 2.84 44.99 0.13 6.14 16 13 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 14 C 0.07 2.17 6.86 71.98 0.49 2.66 16 15 O -0.58 -20.55 12.64 -148.98 -1.88 -22.44 16 16 N -0.72 -34.64 4.51 -322.95 -1.46 -36.10 16 17 C -0.24 -12.44 9.93 84.03 0.83 -11.61 16 18 H 0.08 3.96 7.83 -2.92 -0.02 3.93 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 21 Si 0.97 44.48 29.55 68.60 2.03 46.50 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 1.61 8.04 -2.39 -0.02 1.60 16 27 H 0.07 2.25 5.85 -2.39 -0.01 2.24 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.15 2.75 8.06 -2.92 -0.02 2.73 16 31 H 0.12 3.74 6.46 -2.91 -0.02 3.72 16 32 H 0.41 15.01 6.21 -92.70 -0.58 14.43 16 33 H 0.05 2.14 7.40 -2.39 -0.02 2.12 16 34 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.39 9.49 9.12 -74.06 -0.68 8.82 16 38 H 0.37 20.33 7.80 -92.70 -0.72 19.60 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -69.36 329.32 -0.15 -69.51 By element: Atomic # 1 Polarization: 51.28 SS G_CDS: -0.88 Total: 50.39 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 4.30 Total: 1.75 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -3.66 Total: -122.34 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.93 Total: -45.82 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.36 -0.15 -69.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734358882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds