Wall clock time and date at job start Mon Mar 30 2020 23:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37979 * 120.07245 * 2 1 4 4 C 1.38335 * 120.14391 * 180.02562 * 3 2 1 5 5 C 1.38387 * 120.29230 * 359.97438 * 4 3 2 6 6 C 1.37939 * 120.14483 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.07285 * 180.27956 * 2 1 3 8 8 C 1.47851 * 120.14351 * 359.97438 * 7 2 1 9 9 O 1.21548 * 120.00069 * 6.48417 * 8 7 2 10 10 N 1.34769 * 119.99555 * 186.48004 * 8 7 2 11 11 C 1.46510 * 119.99767 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46961 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46620 * 65.00808 * 12 11 10 14 14 C 1.52995 * 109.46786 * 185.00072 * 12 11 10 15 15 O 1.42905 * 109.47286 * 55.00354 * 14 12 11 16 16 N 1.46497 * 109.47532 * 305.00338 * 12 11 10 17 17 C 1.36941 * 120.00105 * 154.99944 * 16 12 11 18 18 H 1.07998 * 119.99666 * 359.97438 * 17 16 12 19 19 C 1.38811 * 119.99862 * 180.02562 * 17 16 12 20 20 N 1.31613 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47081 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47272 * 119.99849 * 21 19 17 24 24 H 1.48497 * 109.47026 * 240.00032 * 21 19 17 25 25 H 1.09002 * 109.47075 * 96.57223 * 1 2 3 26 26 H 1.08999 * 109.46908 * 216.57662 * 1 2 3 27 27 H 1.09003 * 109.47146 * 336.57792 * 1 2 3 28 28 H 1.08003 * 119.93120 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.85707 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.92853 * 180.02562 * 5 4 3 31 31 H 1.07994 * 120.07519 * 179.97438 * 6 5 4 32 32 H 0.96995 * 120.00735 * 0.02562 * 10 8 7 33 33 H 1.08993 * 109.47263 * 300.00580 * 11 10 8 34 34 H 1.09007 * 109.46456 * 60.00422 * 11 10 8 35 35 H 1.09005 * 109.47246 * 175.00299 * 14 12 11 36 36 H 1.08997 * 109.47647 * 295.00432 * 14 12 11 37 37 H 0.96696 * 114.00032 * 179.97438 * 15 14 12 38 38 H 0.97001 * 120.00022 * 334.99953 * 16 12 11 39 39 H 0.96999 * 119.99961 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0017 -0.0005 6 6 3.6023 -1.1989 -0.0005 7 6 2.2064 -1.2077 -0.0059 8 6 1.4720 -2.4909 -0.0116 9 8 0.2623 -2.4983 -0.1300 10 7 2.1439 -3.6523 0.1145 11 6 1.4161 -4.9239 0.1094 12 6 2.4068 -6.0791 0.2670 13 1 2.8793 -6.0213 1.2476 14 6 1.6632 -7.4099 0.1369 15 8 0.9482 -7.4372 -1.1001 16 7 3.4323 -5.9888 -0.7754 17 6 4.6659 -6.5475 -0.5725 18 1 4.8830 -7.0544 0.3560 19 6 5.6377 -6.4614 -1.5600 20 7 5.3732 -5.8432 -2.6914 21 14 7.3203 -7.2242 -1.2836 22 1 7.3627 -7.8562 0.0596 23 1 7.5741 -8.2534 -2.3236 24 1 8.3618 -6.1690 -1.3667 25 1 -0.3633 -0.1176 -1.0209 26 1 -0.3633 -0.8253 0.6124 27 1 -0.3633 0.9430 0.4085 28 1 1.6585 2.1294 0.0004 29 1 4.1183 2.1331 -0.0001 30 1 5.3613 0.0099 -0.0005 31 1 4.1493 -2.1301 -0.0010 32 1 3.1092 -3.6465 0.2093 33 1 0.7060 -4.9394 0.9361 34 1 0.8791 -5.0313 -0.8331 35 1 2.3803 -8.2306 0.1603 36 1 0.9618 -7.5166 0.9643 37 1 0.4527 -8.2538 -1.2500 38 1 3.2374 -5.5331 -1.6093 39 1 6.0524 -5.7827 -3.3813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734358883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:46 Heat of formation + Delta-G solvation = -50.152769 kcal Electronic energy + Delta-G solvation = -21551.048750 eV Core-core repulsion = 18265.829710 eV Total energy + Delta-G solvation = -3285.219040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10291 -38.19912 -37.03242 -34.95303 -33.65704 -32.42957 -31.72302 -30.73518 -28.32061 -26.95873 -25.26403 -23.72517 -23.19895 -21.37630 -20.17476 -19.88752 -17.78953 -17.23743 -16.61258 -15.94130 -15.62026 -15.15268 -14.90310 -14.64564 -14.41287 -13.96341 -13.63899 -13.32803 -13.20243 -13.04442 -12.85947 -12.73399 -12.02424 -11.94750 -11.85030 -11.63368 -11.40657 -11.00408 -10.90861 -10.86645 -10.54843 -10.08965 -9.80678 -9.40590 -9.27621 -9.00193 -8.94294 -8.70657 -8.43628 -7.05717 -5.83363 -3.14007 0.99389 1.42101 3.14395 3.37068 3.42970 3.45582 3.61132 3.99206 4.50748 4.83944 4.91664 4.93212 4.96309 5.12836 5.34785 5.40454 5.50598 5.53582 5.56864 5.72620 5.87332 5.90531 5.94945 5.98332 6.02925 6.04952 6.33004 6.35811 6.38263 6.49489 6.50503 6.67103 6.74869 6.95648 6.96729 7.61151 7.98257 8.20353 8.33447 8.61372 9.45814 10.01121 10.37764 11.38137 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.005362 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.767818 B = 5221.062575 C = 6755.437412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.095 4.095 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.135 4.135 8 C 0.553 3.447 9 O -0.546 6.546 10 N -0.708 5.708 11 C 0.119 3.881 12 C 0.165 3.835 13 H 0.066 0.934 14 C 0.060 3.940 15 O -0.560 6.560 16 N -0.714 5.714 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.027 0.973 37 H 0.364 0.636 38 H 0.389 0.611 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 9.454 7.561 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.114 4.114 5 C -0.153 4.153 6 C -0.094 4.094 7 C -0.138 4.138 8 C 0.340 3.660 9 O -0.426 6.426 10 N -0.359 5.359 11 C -0.005 4.005 12 C 0.054 3.946 13 H 0.083 0.917 14 C -0.022 4.022 15 O -0.363 6.363 16 N -0.355 5.355 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.208 0.792 38 H 0.223 0.777 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.551 9.932 7.479 14.054 hybrid contribution 1.344 -1.023 -0.174 1.698 sum -5.207 8.909 7.306 12.643 Atomic orbital electron populations 1.21053 0.90207 1.02558 1.03637 1.20044 0.96786 0.91539 0.94472 1.21002 0.94254 0.97315 1.03023 1.21303 0.94243 0.98154 0.97661 1.21103 1.00278 0.92157 1.01774 1.21498 0.93112 0.99131 0.95664 1.19892 0.93673 0.93408 1.06847 1.18228 0.87032 0.83832 0.76871 1.90674 1.13806 1.87392 1.50771 1.45940 1.11872 1.05468 1.72621 1.21558 0.94502 0.82089 1.02365 1.20602 0.89173 0.90496 0.94377 0.91671 1.23023 0.93719 1.00855 0.84553 1.86573 1.67464 1.42092 1.40196 1.42390 1.09497 1.66955 1.16682 1.19264 0.88880 1.29292 1.00508 0.91130 1.24744 0.98406 1.00993 0.96273 1.69689 1.33889 1.47116 1.06510 0.86167 0.84462 0.78539 0.77240 1.20592 1.21880 1.21843 0.90800 0.88668 0.92872 0.85741 0.85902 0.85485 0.84884 0.75447 0.92058 0.90484 0.93326 0.95520 0.79160 0.77654 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.72 36.01 0.31 -1.27 16 2 C -0.03 -0.39 5.91 -104.22 -0.62 -1.01 16 3 C -0.14 -1.64 9.66 -39.64 -0.38 -2.02 16 4 C -0.10 -1.07 10.04 -39.49 -0.40 -1.47 16 5 C -0.14 -1.69 10.03 -39.64 -0.40 -2.09 16 6 C -0.08 -1.10 9.53 -39.19 -0.37 -1.48 16 7 C -0.14 -2.15 5.87 -104.97 -0.62 -2.76 16 8 C 0.55 9.92 7.70 -12.33 -0.09 9.83 16 9 O -0.55 -10.76 13.36 5.32 0.07 -10.69 16 10 N -0.71 -12.54 5.34 -61.24 -0.33 -12.86 16 11 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 12 C 0.16 3.12 2.84 -67.93 -0.19 2.93 16 13 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 14 C 0.06 1.03 6.86 37.16 0.25 1.29 16 15 O -0.56 -10.01 12.64 -35.23 -0.45 -10.46 16 16 N -0.71 -16.89 4.51 -53.43 -0.24 -17.13 16 17 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.07 13.06 55.49 0.72 -26.34 16 21 Si 0.90 21.50 29.55 -169.99 -5.02 16.47 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 27 H 0.05 0.56 8.04 -51.93 -0.42 0.15 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.97 6.45 -52.49 -0.34 1.63 16 32 H 0.41 7.21 6.21 -40.82 -0.25 6.96 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.56 7.40 -51.93 -0.38 1.18 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.36 4.68 9.12 45.56 0.42 5.09 16 38 H 0.39 10.29 7.80 -40.82 -0.32 9.97 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -31.52 329.34 -7.57 -39.09 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -4.53 Total: 19.77 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.77 Total: -2.82 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.16 Total: -56.34 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.37 Total: -21.14 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.52 -7.57 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734358883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.063 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds