Wall clock time and date at job start Mon Mar 30 2020 23:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37979 * 120.07245 * 2 1 4 4 C 1.38335 * 120.14391 * 180.02562 * 3 2 1 5 5 C 1.38387 * 120.29230 * 359.97438 * 4 3 2 6 6 C 1.37939 * 120.14483 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.07285 * 180.27956 * 2 1 3 8 8 C 1.47851 * 120.14351 * 359.97438 * 7 2 1 9 9 O 1.21548 * 120.00069 * 6.48417 * 8 7 2 10 10 N 1.34769 * 119.99555 * 186.48004 * 8 7 2 11 11 C 1.46510 * 119.99767 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46961 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46620 * 65.00808 * 12 11 10 14 14 C 1.52995 * 109.46786 * 185.00072 * 12 11 10 15 15 O 1.42905 * 109.47286 * 55.00354 * 14 12 11 16 16 N 1.46497 * 109.47532 * 305.00338 * 12 11 10 17 17 C 1.36941 * 120.00105 * 154.99944 * 16 12 11 18 18 H 1.07998 * 119.99666 * 359.97438 * 17 16 12 19 19 C 1.38811 * 119.99862 * 180.02562 * 17 16 12 20 20 N 1.31613 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47081 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47272 * 119.99849 * 21 19 17 24 24 H 1.48497 * 109.47026 * 240.00032 * 21 19 17 25 25 H 1.09002 * 109.47075 * 96.57223 * 1 2 3 26 26 H 1.08999 * 109.46908 * 216.57662 * 1 2 3 27 27 H 1.09003 * 109.47146 * 336.57792 * 1 2 3 28 28 H 1.08003 * 119.93120 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.85707 * 180.02562 * 4 3 2 30 30 H 1.07995 * 119.92853 * 180.02562 * 5 4 3 31 31 H 1.07994 * 120.07519 * 179.97438 * 6 5 4 32 32 H 0.96995 * 120.00735 * 0.02562 * 10 8 7 33 33 H 1.08993 * 109.47263 * 300.00580 * 11 10 8 34 34 H 1.09007 * 109.46456 * 60.00422 * 11 10 8 35 35 H 1.09005 * 109.47246 * 175.00299 * 14 12 11 36 36 H 1.08997 * 109.47647 * 295.00432 * 14 12 11 37 37 H 0.96696 * 114.00032 * 179.97438 * 15 14 12 38 38 H 0.97001 * 120.00022 * 334.99953 * 16 12 11 39 39 H 0.96999 * 119.99961 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0017 -0.0005 6 6 3.6023 -1.1989 -0.0005 7 6 2.2064 -1.2077 -0.0059 8 6 1.4720 -2.4909 -0.0116 9 8 0.2623 -2.4983 -0.1300 10 7 2.1439 -3.6523 0.1145 11 6 1.4161 -4.9239 0.1094 12 6 2.4068 -6.0791 0.2670 13 1 2.8793 -6.0213 1.2476 14 6 1.6632 -7.4099 0.1369 15 8 0.9482 -7.4372 -1.1001 16 7 3.4323 -5.9888 -0.7754 17 6 4.6659 -6.5475 -0.5725 18 1 4.8830 -7.0544 0.3560 19 6 5.6377 -6.4614 -1.5600 20 7 5.3732 -5.8432 -2.6914 21 14 7.3203 -7.2242 -1.2836 22 1 7.3627 -7.8562 0.0596 23 1 7.5741 -8.2534 -2.3236 24 1 8.3618 -6.1690 -1.3667 25 1 -0.3633 -0.1176 -1.0209 26 1 -0.3633 -0.8253 0.6124 27 1 -0.3633 0.9430 0.4085 28 1 1.6585 2.1294 0.0004 29 1 4.1183 2.1331 -0.0001 30 1 5.3613 0.0099 -0.0005 31 1 4.1493 -2.1301 -0.0010 32 1 3.1092 -3.6465 0.2093 33 1 0.7060 -4.9394 0.9361 34 1 0.8791 -5.0313 -0.8331 35 1 2.3803 -8.2306 0.1603 36 1 0.9618 -7.5166 0.9643 37 1 0.4527 -8.2538 -1.2500 38 1 3.2374 -5.5331 -1.6093 39 1 6.0524 -5.7827 -3.3813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734358883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:46 Heat of formation + Delta-G solvation = -73.549473 kcal Electronic energy + Delta-G solvation = -21552.063307 eV Core-core repulsion = 18265.829710 eV Total energy + Delta-G solvation = -3286.233597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34638 -39.43101 -38.49532 -36.44249 -35.33591 -33.60564 -33.23943 -32.03944 -30.01972 -28.05141 -26.60748 -25.64547 -24.37731 -22.46073 -21.64001 -21.24348 -19.47929 -18.62243 -18.16779 -17.34460 -16.81589 -16.47675 -16.31085 -15.96149 -15.82299 -15.41113 -15.18458 -14.81694 -14.63606 -14.24786 -14.14526 -14.01969 -13.62041 -13.06422 -13.02563 -12.93624 -12.75819 -12.68645 -12.59744 -12.22091 -11.99871 -11.85240 -11.73548 -11.02747 -10.73304 -10.62424 -10.14416 -9.85204 -9.62048 -9.01693 -7.90512 -5.20232 -0.09584 0.41021 1.49303 1.50474 1.59546 1.89695 2.25540 2.57367 2.88247 3.41888 3.60402 3.75234 3.85757 3.90050 3.92808 4.04070 4.17886 4.42096 4.42364 4.52287 4.55061 4.60106 4.76628 4.82155 4.86572 4.87701 4.98919 5.02156 5.21242 5.26699 5.39621 5.51254 5.52061 5.56157 5.63469 5.99332 6.28029 6.56798 7.06389 7.21119 7.36113 8.07767 8.33706 9.32526 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.005362 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.767818 B = 5221.062575 C = 6755.437412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.042 4.042 3 C -0.133 4.133 4 C -0.084 4.084 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.162 4.162 8 C 0.547 3.453 9 O -0.571 6.571 10 N -0.709 5.709 11 C 0.130 3.870 12 C 0.160 3.840 13 H 0.079 0.921 14 C 0.065 3.935 15 O -0.584 6.584 16 N -0.723 5.723 17 C -0.237 4.237 18 H 0.082 0.918 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.301 1.301 24 H -0.295 1.295 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.407 0.593 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.385 0.615 38 H 0.372 0.628 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 10.741 9.087 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.043 4.043 3 C -0.151 4.151 4 C -0.101 4.101 5 C -0.157 4.157 6 C -0.110 4.110 7 C -0.165 4.165 8 C 0.336 3.664 9 O -0.453 6.453 10 N -0.360 5.360 11 C 0.006 3.994 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.015 4.015 15 O -0.391 6.391 16 N -0.362 5.362 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.263 4.263 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.229 1.229 24 H -0.222 1.222 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.203 0.797 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.220 11.184 9.066 15.683 hybrid contribution 1.148 -1.370 -0.596 1.884 sum -5.071 9.815 8.469 13.920 Atomic orbital electron populations 1.20969 0.90010 1.03239 1.02714 1.20290 0.97219 0.91926 0.94915 1.21389 0.94800 0.97501 1.01364 1.21759 0.94175 0.99082 0.95124 1.21413 1.01419 0.91842 1.01014 1.21502 0.92747 0.99825 0.96877 1.19865 0.94220 0.92939 1.09477 1.18684 0.86946 0.84621 0.76112 1.90653 1.14795 1.87853 1.51998 1.45949 1.11771 1.05532 1.72707 1.21401 0.94350 0.82041 1.01617 1.20859 0.88648 0.91906 0.93495 0.90315 1.22861 0.94277 0.98684 0.85712 1.86527 1.67886 1.43962 1.40714 1.42488 1.10051 1.66773 1.16937 1.19659 0.89471 1.27394 1.00301 0.90016 1.25479 1.01904 1.02492 0.96379 1.69855 1.34708 1.49601 1.07568 0.85149 0.80357 0.77241 0.77410 1.18802 1.22921 1.22220 0.91818 0.91022 0.89768 0.82472 0.82065 0.83544 0.86152 0.75534 0.90295 0.93086 0.94419 0.91572 0.76657 0.79660 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.97 8.72 71.24 0.62 -2.35 16 2 C -0.04 -1.17 5.91 -19.61 -0.12 -1.29 16 3 C -0.13 -2.74 9.66 22.23 0.21 -2.53 16 4 C -0.08 -1.58 10.04 22.33 0.22 -1.36 16 5 C -0.14 -3.22 10.03 22.23 0.22 -3.00 16 6 C -0.09 -2.67 9.53 22.53 0.21 -2.46 16 7 C -0.16 -5.22 5.87 -20.09 -0.12 -5.34 16 8 C 0.55 20.36 7.70 86.79 0.67 21.03 16 9 O -0.57 -23.32 13.36 -3.87 -0.05 -23.37 16 10 N -0.71 -25.93 5.34 -465.96 -2.49 -28.41 16 11 C 0.13 4.74 5.12 86.38 0.44 5.19 16 12 C 0.16 5.99 2.84 44.99 0.13 6.12 16 13 H 0.08 2.74 8.08 -2.39 -0.02 2.72 16 14 C 0.07 2.16 6.86 71.98 0.49 2.65 16 15 O -0.58 -20.51 12.64 -148.98 -1.88 -22.39 16 16 N -0.72 -34.60 4.51 -322.95 -1.46 -36.05 16 17 C -0.24 -12.28 9.93 84.03 0.83 -11.44 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 21 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.23 5.88 -2.39 -0.01 2.21 16 27 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 28 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.12 3.74 6.45 -2.91 -0.02 3.72 16 32 H 0.41 14.98 6.21 -92.71 -0.58 14.40 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 2.13 7.40 -2.38 -0.02 2.12 16 35 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.39 9.46 9.12 -74.06 -0.68 8.79 16 38 H 0.37 20.31 7.80 -92.71 -0.72 19.58 16 39 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -69.48 329.34 -0.15 -69.63 By element: Atomic # 1 Polarization: 50.91 SS G_CDS: -0.88 Total: 50.03 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.30 Total: 1.84 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -3.66 Total: -122.28 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.93 Total: -45.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.48 -0.15 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734358883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.918 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds