Wall clock time and date at job start Tue Mar 31 2020 00:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34179 * 125.44118 * 2 1 4 4 C 1.47020 * 105.95633 * 180.19264 * 3 2 1 5 5 C 1.47375 * 127.19385 * 179.73768 * 4 3 2 6 6 O 1.21610 * 119.99860 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.47027 * 125.65060 * 0.02621 * 7 5 4 9 9 C 1.54322 * 107.27224 * 178.90264 * 8 7 5 10 10 C 1.55153 * 102.94422 * 337.80771 * 9 8 7 11 11 H 1.08996 * 111.00532 * 277.38966 * 10 9 8 12 12 C 1.53005 * 111.00369 * 153.57513 * 10 9 8 13 13 N 1.46499 * 109.46807 * 175.00024 * 12 10 9 14 14 C 1.36934 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99740 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00488 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99433 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47118 * 90.00232 * 18 16 14 20 20 H 1.48506 * 109.46959 * 209.99860 * 18 16 14 21 21 H 1.48499 * 109.47521 * 329.99592 * 18 16 14 22 22 C 1.47426 * 125.64915 * 179.71733 * 7 5 4 23 23 C 1.36422 * 105.61327 * 359.63346 * 4 3 2 24 24 O 1.33647 * 108.39811 * 0.37059 * 23 4 3 25 25 H 1.08999 * 109.47509 * 89.99724 * 1 2 3 26 26 H 1.09001 * 109.47549 * 210.00183 * 1 2 3 27 27 H 1.09000 * 109.46738 * 330.00016 * 1 2 3 28 28 H 1.08002 * 127.01820 * 359.92591 * 3 2 1 29 29 H 1.08997 * 109.87906 * 298.32574 * 8 7 5 30 30 H 1.09002 * 109.87701 * 59.48295 * 8 7 5 31 31 H 1.08999 * 110.71997 * 96.17322 * 9 8 7 32 32 H 1.09002 * 110.71617 * 219.26493 * 9 8 7 33 33 H 1.09000 * 109.46996 * 294.99890 * 12 10 9 34 34 H 1.08999 * 109.47030 * 54.99924 * 12 10 9 35 35 H 0.97001 * 120.00451 * 359.97438 * 13 12 10 36 36 H 0.97007 * 119.99610 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.36854 * 323.00564 * 22 7 5 38 38 H 1.09004 * 110.36645 * 85.33090 * 22 7 5 39 39 H 1.07999 * 125.79658 * 180.11931 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0048 5 6 4.9025 1.4124 -0.0119 6 8 4.8320 2.6264 -0.0150 7 7 6.1067 0.8073 -0.0151 8 6 6.3361 -0.6450 -0.0126 9 6 7.8627 -0.8678 -0.0461 10 6 8.3955 0.4643 -0.6366 11 1 8.3310 0.4629 -1.7247 12 6 9.8293 0.7340 -0.1756 13 7 10.3400 1.9331 -0.8446 14 6 11.6110 2.3723 -0.5864 15 1 12.2372 1.8345 0.1101 16 6 12.0948 3.5089 -1.2198 17 7 11.3319 4.1640 -2.0690 18 14 13.8289 4.1075 -0.8681 19 1 14.7741 3.4752 -1.8232 20 1 13.8836 5.5836 -1.0215 21 1 14.2076 3.7398 0.5199 22 6 7.4123 1.4920 -0.0281 23 6 3.5789 -0.7583 0.0013 24 8 2.2852 -1.0936 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0011 29 1 5.9169 -1.0848 0.8923 30 1 5.8763 -1.0943 -0.8929 31 1 8.2515 -1.0266 0.9597 32 1 8.1156 -1.7080 -0.6929 33 1 9.8413 0.8870 0.9035 34 1 10.4588 -0.1192 -0.4286 35 1 9.7778 2.4160 -1.4704 36 1 11.6700 4.9580 -2.5119 37 1 7.3654 2.3865 -0.6491 38 1 7.7159 1.7491 0.9867 39 1 4.4103 -1.4477 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752934580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:02 Heat of formation + Delta-G solvation = -3.343160 kcal Electronic energy + Delta-G solvation = -21056.929695 eV Core-core repulsion = 17773.740472 eV Total energy + Delta-G solvation = -3283.189223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.77637 -39.85698 -37.51282 -34.73009 -33.30973 -32.75485 -31.75423 -30.42092 -28.92720 -26.95921 -25.67209 -24.19713 -22.48088 -22.04183 -20.99590 -20.09632 -19.48764 -17.28519 -16.96022 -16.63936 -16.48287 -16.02937 -15.39590 -14.71523 -14.38566 -13.96612 -13.75481 -13.49899 -13.42758 -13.35371 -13.17140 -13.02284 -12.68374 -12.56505 -12.28601 -11.98046 -11.72902 -11.29289 -10.86974 -10.66108 -10.62736 -10.45974 -10.04604 -9.93557 -9.91905 -9.67724 -8.87390 -8.81461 -8.59776 -6.92429 -5.74871 -3.04488 1.19162 1.84756 2.56672 2.98316 3.34900 3.45004 3.49800 3.52058 4.25627 4.39788 4.53354 4.58804 4.64141 4.79085 4.86636 5.00914 5.09728 5.14750 5.26701 5.32753 5.37109 5.54051 5.56461 5.59927 5.73194 5.83523 5.93605 5.95377 6.08861 6.13633 6.24883 6.37350 6.43338 6.67851 6.78313 6.80548 7.54227 7.70621 8.22973 8.43260 9.54487 10.11277 10.45473 11.47803 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040676 B = 0.003113 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.196037 B = 8992.800405 C = 9528.571016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.162 4.162 4 C -0.222 4.222 5 C 0.596 3.404 6 O -0.533 6.533 7 N -0.614 5.614 8 C 0.089 3.911 9 C -0.125 4.125 10 C -0.106 4.106 11 H 0.086 0.914 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.117 3.883 23 C 0.003 3.997 24 O -0.175 6.175 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -14.671 4.648 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.226 4.226 5 C 0.385 3.615 6 O -0.411 6.411 7 N -0.348 5.348 8 C -0.034 4.034 9 C -0.163 4.163 10 C -0.125 4.125 11 H 0.104 0.896 12 C 0.037 3.963 13 N -0.378 5.378 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.004 4.004 23 C -0.067 4.067 24 O -0.071 6.071 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -20.077 -14.225 4.727 25.056 hybrid contribution 1.004 0.670 -0.088 1.210 sum -19.074 -13.555 4.639 23.855 Atomic orbital electron populations 1.20321 0.84676 1.04188 1.03703 1.22327 0.94163 0.83701 1.06566 1.22507 0.89935 0.99780 1.05984 1.21502 0.94589 0.93311 1.13241 1.16893 0.81131 0.86714 0.76725 1.90815 1.86438 1.13445 1.50357 1.48399 1.05974 1.07362 1.73085 1.22359 0.98271 0.81937 1.00827 1.22661 0.92387 0.98586 1.02663 1.22566 0.95961 0.93108 1.00891 0.89560 1.20582 0.89351 0.90833 0.95501 1.42374 1.14844 1.28459 1.52098 1.19204 0.90316 1.07072 1.20731 0.91149 1.24761 0.98364 0.98241 0.99574 1.69664 1.36084 1.20434 1.31795 0.86184 0.84385 0.77876 0.77690 1.21731 1.21759 1.20759 1.22330 0.79745 0.96497 1.01863 1.25249 0.84142 0.95992 1.01303 1.83736 1.16601 1.35519 1.71285 0.89958 0.90440 0.89173 0.82342 0.91177 0.91170 0.90057 0.89703 0.95979 0.95744 0.78186 0.93452 0.89653 0.90913 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.40 36.00 0.37 -0.03 16 2 C -0.02 -0.19 7.28 -35.74 -0.26 -0.45 16 3 C -0.16 -1.96 10.90 -37.45 -0.41 -2.37 16 4 C -0.22 -2.96 6.28 -103.28 -0.65 -3.60 16 5 C 0.60 9.84 7.84 -12.54 -0.10 9.74 16 6 O -0.53 -11.04 17.24 5.27 0.09 -10.95 16 7 N -0.61 -8.96 3.33 -171.94 -0.57 -9.54 16 8 C 0.09 0.89 5.01 -3.06 -0.02 0.87 16 9 C -0.12 -1.32 6.42 -24.90 -0.16 -1.48 16 10 C -0.11 -1.62 3.03 -88.59 -0.27 -1.89 16 11 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.17 3.17 5.72 -4.04 -0.02 3.15 16 13 N -0.73 -18.47 5.55 -59.91 -0.33 -18.80 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.12 1.96 6.32 -2.64 -0.02 1.95 16 23 C 0.00 0.03 10.64 30.08 0.32 0.35 16 24 O -0.18 -1.80 10.52 7.65 0.08 -1.72 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.07 0.54 7.04 -51.93 -0.37 0.18 16 30 H 0.07 0.57 6.89 -51.93 -0.36 0.21 16 31 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.43 7.96 -51.93 -0.41 0.02 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 38 H 0.07 1.26 7.90 -51.93 -0.41 0.85 16 39 H 0.22 1.48 4.46 -52.49 -0.23 1.25 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -35.21 326.95 -6.99 -42.20 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.43 Total: 5.37 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.45 Total: -1.19 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.18 Total: -56.23 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.17 Total: -12.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.21 -6.99 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752934580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.856 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds