Wall clock time and date at job start Tue Mar 31 2020 00:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34179 * 125.44118 * 2 1 4 4 C 1.47020 * 105.95633 * 180.19264 * 3 2 1 5 5 C 1.47375 * 127.19385 * 179.73768 * 4 3 2 6 6 O 1.21610 * 119.99860 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.47027 * 125.65060 * 0.02621 * 7 5 4 9 9 C 1.54322 * 107.27224 * 178.90264 * 8 7 5 10 10 C 1.55153 * 102.94422 * 337.80771 * 9 8 7 11 11 H 1.08996 * 111.00532 * 277.38966 * 10 9 8 12 12 C 1.53005 * 111.00369 * 153.57513 * 10 9 8 13 13 N 1.46499 * 109.46807 * 175.00024 * 12 10 9 14 14 C 1.36934 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99740 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00488 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99433 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47118 * 90.00232 * 18 16 14 20 20 H 1.48506 * 109.46959 * 209.99860 * 18 16 14 21 21 H 1.48499 * 109.47521 * 329.99592 * 18 16 14 22 22 C 1.47426 * 125.64915 * 179.71733 * 7 5 4 23 23 C 1.36422 * 105.61327 * 359.63346 * 4 3 2 24 24 O 1.33647 * 108.39811 * 0.37059 * 23 4 3 25 25 H 1.08999 * 109.47509 * 89.99724 * 1 2 3 26 26 H 1.09001 * 109.47549 * 210.00183 * 1 2 3 27 27 H 1.09000 * 109.46738 * 330.00016 * 1 2 3 28 28 H 1.08002 * 127.01820 * 359.92591 * 3 2 1 29 29 H 1.08997 * 109.87906 * 298.32574 * 8 7 5 30 30 H 1.09002 * 109.87701 * 59.48295 * 8 7 5 31 31 H 1.08999 * 110.71997 * 96.17322 * 9 8 7 32 32 H 1.09002 * 110.71617 * 219.26493 * 9 8 7 33 33 H 1.09000 * 109.46996 * 294.99890 * 12 10 9 34 34 H 1.08999 * 109.47030 * 54.99924 * 12 10 9 35 35 H 0.97001 * 120.00451 * 359.97438 * 13 12 10 36 36 H 0.97007 * 119.99610 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.36854 * 323.00564 * 22 7 5 38 38 H 1.09004 * 110.36645 * 85.33090 * 22 7 5 39 39 H 1.07999 * 125.79658 * 180.11931 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0048 5 6 4.9025 1.4124 -0.0119 6 8 4.8320 2.6264 -0.0150 7 7 6.1067 0.8073 -0.0151 8 6 6.3361 -0.6450 -0.0126 9 6 7.8627 -0.8678 -0.0461 10 6 8.3955 0.4643 -0.6366 11 1 8.3310 0.4629 -1.7247 12 6 9.8293 0.7340 -0.1756 13 7 10.3400 1.9331 -0.8446 14 6 11.6110 2.3723 -0.5864 15 1 12.2372 1.8345 0.1101 16 6 12.0948 3.5089 -1.2198 17 7 11.3319 4.1640 -2.0690 18 14 13.8289 4.1075 -0.8681 19 1 14.7741 3.4752 -1.8232 20 1 13.8836 5.5836 -1.0215 21 1 14.2076 3.7398 0.5199 22 6 7.4123 1.4920 -0.0281 23 6 3.5789 -0.7583 0.0013 24 8 2.2852 -1.0936 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0011 29 1 5.9169 -1.0848 0.8923 30 1 5.8763 -1.0943 -0.8929 31 1 8.2515 -1.0266 0.9597 32 1 8.1156 -1.7080 -0.6929 33 1 9.8413 0.8870 0.9035 34 1 10.4588 -0.1192 -0.4286 35 1 9.7778 2.4160 -1.4704 36 1 11.6700 4.9580 -2.5119 37 1 7.3654 2.3865 -0.6491 38 1 7.7159 1.7491 0.9867 39 1 4.4103 -1.4477 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752934580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:01 Heat of formation + Delta-G solvation = -28.250448 kcal Electronic energy + Delta-G solvation = -21058.009756 eV Core-core repulsion = 17773.740472 eV Total energy + Delta-G solvation = -3284.269284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.60826 -41.04673 -38.81879 -36.49417 -34.35099 -33.93751 -32.96365 -31.88247 -30.17161 -27.92642 -26.97585 -25.71711 -23.99778 -23.11687 -21.86030 -21.42868 -20.52523 -19.12630 -18.05480 -17.63095 -17.45619 -17.20353 -16.64629 -16.41789 -15.72129 -15.31547 -15.11308 -14.80494 -14.69993 -14.09445 -14.03356 -13.97455 -13.84443 -13.76103 -13.45015 -13.11401 -12.97416 -12.75430 -12.63696 -12.23861 -12.12823 -11.89263 -11.64489 -11.60400 -11.25595 -10.94230 -10.89261 -9.79712 -9.58995 -9.00876 -7.95487 -5.24925 0.28184 0.98013 1.46437 1.48907 1.57251 1.70433 1.96801 2.20724 2.55667 3.30810 3.39116 3.55266 3.59921 3.68407 3.84963 3.91757 4.17834 4.22058 4.34587 4.39003 4.49703 4.54306 4.62234 4.73587 4.74039 4.78155 4.82560 4.85675 4.99571 5.03443 5.07314 5.19856 5.25234 5.37078 5.40859 5.49926 5.97167 6.26279 6.40229 7.00591 7.32107 8.08846 8.29825 9.28372 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040676 B = 0.003113 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.196037 B = 8992.800405 C = 9528.571016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.003 4.003 3 C -0.199 4.199 4 C -0.260 4.260 5 C 0.588 3.412 6 O -0.596 6.596 7 N -0.612 5.612 8 C 0.080 3.920 9 C -0.110 4.110 10 C -0.097 4.097 11 H 0.076 0.924 12 C 0.163 3.837 13 N -0.750 5.750 14 C -0.243 4.243 15 H 0.081 0.919 16 C -0.081 4.081 17 N -0.973 5.973 18 Si 0.976 3.024 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.120 3.880 23 C 0.036 3.964 24 O -0.172 6.172 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.150 0.850 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.039 0.961 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.675 -18.477 5.554 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.218 4.218 4 C -0.264 4.264 5 C 0.380 3.620 6 O -0.479 6.479 7 N -0.344 5.344 8 C -0.041 4.041 9 C -0.148 4.148 10 C -0.117 4.117 11 H 0.095 0.905 12 C 0.037 3.963 13 N -0.393 5.393 14 C -0.375 4.375 15 H 0.099 0.901 16 C -0.273 4.273 17 N -0.624 5.624 18 Si 0.805 3.195 19 H -0.211 1.211 20 H -0.226 1.226 21 H -0.192 1.192 22 C -0.003 4.003 23 C -0.034 4.034 24 O -0.067 6.067 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.168 0.832 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.751 -18.132 5.667 28.134 hybrid contribution 1.153 1.774 -0.332 2.142 sum -19.598 -16.358 5.335 26.079 Atomic orbital electron populations 1.20544 0.81670 1.05633 1.05072 1.22921 0.95626 0.82639 1.03983 1.22621 0.90268 1.00446 1.08509 1.21348 0.93505 0.94715 1.16863 1.17468 0.82458 0.86390 0.75711 1.90766 1.87395 1.16222 1.53513 1.48448 1.04514 1.09440 1.72033 1.22783 0.98404 0.78935 1.03948 1.22693 0.92188 0.96233 1.03661 1.22387 0.93257 0.95727 1.00329 0.90524 1.20784 0.91656 0.88816 0.95055 1.42663 1.14102 1.30204 1.52290 1.19678 0.91385 1.06712 1.19730 0.90130 1.25643 1.02502 0.98986 1.00155 1.69843 1.38043 1.20984 1.33540 0.85101 0.79671 0.76588 0.78172 1.21130 1.22586 1.19173 1.22084 0.81924 0.95966 1.00344 1.25767 0.84878 0.94900 0.97818 1.83794 1.16656 1.35493 1.70789 0.88492 0.88660 0.88058 0.83248 0.87643 0.88287 0.88741 0.86527 0.95668 0.94282 0.79774 0.94121 0.94170 0.92023 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.40 71.24 0.74 0.12 16 2 C 0.00 -0.05 7.28 24.76 0.18 0.13 16 3 C -0.20 -4.81 10.90 23.65 0.26 -4.55 16 4 C -0.26 -6.77 6.28 -18.99 -0.12 -6.89 16 5 C 0.59 20.10 7.84 86.65 0.68 20.78 16 6 O -0.60 -26.81 17.24 -4.06 -0.07 -26.88 16 7 N -0.61 -17.68 3.33 -816.14 -2.72 -20.40 16 8 C 0.08 1.29 5.01 86.73 0.43 1.72 16 9 C -0.11 -1.89 6.42 31.78 0.20 -1.69 16 10 C -0.10 -2.91 3.03 -9.48 -0.03 -2.93 16 11 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 12 C 0.16 6.14 5.72 86.38 0.49 6.64 16 13 N -0.75 -38.54 5.55 -343.44 -1.90 -40.45 16 14 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 16 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 17 N -0.97 -61.81 13.06 21.65 0.28 -61.52 16 18 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.12 4.18 6.32 86.78 0.55 4.73 16 23 C 0.04 0.61 10.64 67.40 0.72 1.32 16 24 O -0.17 -2.93 10.52 4.45 0.05 -2.89 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.11 1.05 7.04 -2.39 -0.02 1.03 16 30 H 0.10 1.10 6.89 -2.39 -0.02 1.08 16 31 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 0.95 7.96 -2.39 -0.02 0.93 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.37 20.79 7.67 -92.71 -0.71 20.08 16 36 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 38 H 0.06 2.25 7.90 -2.39 -0.02 2.23 16 39 H 0.26 2.05 4.46 -2.91 -0.01 2.03 16 Total: -1.00 -82.23 326.95 3.43 -78.79 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.35 Total: 22.10 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.41 Total: 2.19 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -4.34 Total: -122.37 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.02 Total: -29.77 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -82.23 3.43 -78.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752934580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.541 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds