Wall clock time and date at job start Tue Mar 31 2020 00:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 125.44162 * 2 1 4 4 C 1.47021 * 105.95240 * 180.02562 * 3 2 1 5 5 C 1.47389 * 127.19028 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99735 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.47022 * 125.65549 * 359.95311 * 7 5 4 9 9 C 1.54317 * 107.27514 * 181.09709 * 8 7 5 10 10 C 1.55156 * 102.94471 * 22.19305 * 9 8 7 11 11 H 1.08995 * 111.03840 * 82.58365 * 10 9 8 12 12 C 1.53001 * 111.00983 * 206.42770 * 10 9 8 13 13 N 1.46496 * 109.47205 * 178.64956 * 12 10 9 14 14 C 1.36945 * 119.99718 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47430 * 125.64397 * 179.97438 * 7 5 4 23 23 C 1.36414 * 105.62012 * 0.22221 * 4 3 2 24 24 O 1.33653 * 108.39161 * 359.63834 * 23 4 3 25 25 H 1.09000 * 109.46961 * 89.99491 * 1 2 3 26 26 H 1.08993 * 109.47295 * 210.00262 * 1 2 3 27 27 H 1.09001 * 109.46599 * 329.99841 * 1 2 3 28 28 H 1.07994 * 127.02302 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.87863 * 300.51277 * 8 7 5 30 30 H 1.09003 * 109.87889 * 61.52451 * 8 7 5 31 31 H 1.09004 * 110.72203 * 263.83001 * 9 8 7 32 32 H 1.09005 * 110.72323 * 140.55635 * 9 8 7 33 33 H 1.08997 * 109.46922 * 58.63998 * 12 10 9 34 34 H 1.09000 * 109.46483 * 298.64817 * 12 10 9 35 35 H 0.96996 * 120.00499 * 359.97438 * 13 12 10 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.09000 * 110.37078 * 36.99513 * 22 7 5 38 38 H 1.09003 * 110.45837 * 274.71829 * 22 7 5 39 39 H 1.07995 * 125.80683 * 179.74800 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6026 -0.0006 5 6 4.9026 1.4123 -0.0014 6 8 4.8321 2.6264 -0.0020 7 7 6.1068 0.8071 -0.0014 8 6 6.3361 -0.6451 0.0003 9 6 7.8629 -0.8680 0.0278 10 6 8.3984 0.4663 0.6112 11 1 8.3385 0.4695 1.6995 12 6 9.8301 0.7343 0.1428 13 7 10.2899 2.0149 0.6859 14 6 11.5505 2.4669 0.3996 15 1 12.2057 1.8792 -0.2261 16 6 11.9859 3.6805 0.9136 17 7 11.1875 4.3966 1.6767 18 14 13.7057 4.2968 0.5237 19 1 13.9243 5.6071 1.1873 20 1 14.7065 3.3177 1.0187 21 1 13.8533 4.4558 -0.9453 22 6 7.4125 1.4918 -0.0026 23 6 3.5790 -0.7584 -0.0060 24 8 2.2852 -1.0935 -0.0006 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.9597 2.1229 0.0004 29 1 5.8804 -1.0913 0.8843 30 1 5.9106 -1.0886 -0.8999 31 1 8.2472 -1.0303 -0.9792 32 1 8.1190 -1.7038 0.6789 33 1 9.8551 0.7713 -0.9462 34 1 10.4828 -0.0648 0.4943 35 1 9.7015 2.5426 1.2481 36 1 11.4920 5.2445 2.0362 37 1 7.3697 2.3914 0.6114 38 1 7.7104 1.7422 -1.0208 39 1 4.4102 -1.4478 -0.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752934581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:07 Heat of formation + Delta-G solvation = -3.143798 kcal Electronic energy + Delta-G solvation = -21083.693452 eV Core-core repulsion = 17800.512874 eV Total energy + Delta-G solvation = -3283.180578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76960 -39.84258 -37.50071 -34.72462 -33.30150 -32.74375 -31.74813 -30.42036 -28.88940 -26.95362 -25.67202 -24.19244 -22.50628 -22.02232 -20.98561 -20.05445 -19.47898 -17.28259 -16.96022 -16.64239 -16.46423 -16.00851 -15.38680 -14.69834 -14.41397 -13.95762 -13.74694 -13.49588 -13.42744 -13.33935 -13.17193 -13.02167 -12.66497 -12.54761 -12.28594 -11.94908 -11.71854 -11.30152 -10.84781 -10.66755 -10.61569 -10.46065 -10.05930 -9.92752 -9.90816 -9.66744 -8.86668 -8.80837 -8.58264 -6.92150 -5.74203 -3.04077 1.19961 1.85529 2.57336 2.99552 3.36037 3.45808 3.49891 3.51460 4.26203 4.40453 4.54077 4.59031 4.64868 4.79530 4.87051 5.01502 5.10059 5.15374 5.27775 5.33386 5.37797 5.54731 5.57018 5.60343 5.73798 5.83301 5.94041 5.96696 6.09543 6.14256 6.26271 6.38565 6.45289 6.67407 6.78967 6.81103 7.55630 7.70494 8.24402 8.43879 9.54963 10.11695 10.45870 11.48336 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.003157 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.108472 B = 8865.719244 C = 9442.415035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.162 4.162 4 C -0.222 4.222 5 C 0.595 3.405 6 O -0.532 6.532 7 N -0.614 5.614 8 C 0.089 3.911 9 C -0.125 4.125 10 C -0.106 4.106 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.291 1.291 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.117 3.883 23 C 0.002 3.998 24 O -0.175 6.175 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 -15.219 -3.622 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.226 4.226 5 C 0.385 3.615 6 O -0.410 6.410 7 N -0.348 5.348 8 C -0.034 4.034 9 C -0.163 4.163 10 C -0.125 4.125 11 H 0.104 0.896 12 C 0.037 3.963 13 N -0.378 5.378 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.004 4.004 23 C -0.067 4.067 24 O -0.072 6.072 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.687 -14.771 -3.684 24.887 hybrid contribution 0.987 0.695 0.008 1.207 sum -18.700 -14.076 -3.677 23.693 Atomic orbital electron populations 1.20320 0.84679 1.04216 1.03666 1.22325 0.94161 0.83705 1.06578 1.22507 0.89938 0.99782 1.05974 1.21509 0.94597 0.93310 1.13194 1.16897 0.81133 0.86720 0.76752 1.90818 1.86426 1.13434 1.50313 1.48399 1.05995 1.07345 1.73090 1.22351 0.98236 0.81962 1.00819 1.22664 0.92405 0.98558 1.02670 1.22605 0.95982 0.93157 1.00788 0.89620 1.20582 0.89684 0.89852 0.96165 1.42362 1.15386 1.19597 1.60430 1.19158 0.90736 1.01992 1.25539 0.91202 1.24760 0.98311 0.97540 1.00276 1.69655 1.35803 1.14695 1.37825 0.86259 0.84227 0.77909 0.77717 1.21686 1.21278 1.21257 1.22354 0.79617 0.96485 1.01944 1.25245 0.84134 0.95993 1.01347 1.83735 1.16605 1.35520 1.71298 0.89985 0.90431 0.89167 0.82341 0.91198 0.91210 0.90024 0.89728 0.96009 0.95766 0.78167 0.93387 0.89636 0.90820 0.76368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.40 36.01 0.37 -0.04 16 2 C -0.02 -0.19 7.28 -35.74 -0.26 -0.45 16 3 C -0.16 -1.97 10.90 -37.45 -0.41 -2.38 16 4 C -0.22 -2.97 6.28 -103.27 -0.65 -3.62 16 5 C 0.60 9.92 7.84 -12.54 -0.10 9.82 16 6 O -0.53 -11.13 17.24 5.27 0.09 -11.04 16 7 N -0.61 -9.05 3.33 -171.78 -0.57 -9.62 16 8 C 0.09 0.90 5.01 -3.07 -0.02 0.88 16 9 C -0.12 -1.32 6.42 -24.90 -0.16 -1.48 16 10 C -0.11 -1.62 3.11 -88.46 -0.27 -1.90 16 11 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.17 3.17 5.71 -4.04 -0.02 3.15 16 13 N -0.73 -18.49 5.45 -59.91 -0.33 -18.82 16 14 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.12 2.00 6.08 -2.51 -0.02 1.98 16 23 C 0.00 0.02 10.63 30.07 0.32 0.34 16 24 O -0.18 -1.81 10.52 7.65 0.08 -1.73 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.07 0.57 6.90 -51.93 -0.36 0.21 16 30 H 0.07 0.55 7.02 -51.93 -0.36 0.18 16 31 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.38 10.31 7.53 -40.82 -0.31 10.00 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 38 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 39 H 0.22 1.50 4.46 -52.49 -0.23 1.26 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -35.25 326.76 -7.00 -42.24 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.44 Total: 5.52 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.46 Total: -1.13 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.17 Total: -56.38 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.17 Total: -12.77 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.25 -7.00 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752934581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.100 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds