Wall clock time and date at job start Tue Mar 31 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 125.44162 * 2 1 4 4 C 1.47021 * 105.95240 * 180.02562 * 3 2 1 5 5 C 1.47389 * 127.19028 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99735 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99682 * 179.97438 * 5 4 3 8 8 C 1.47022 * 125.65549 * 359.95311 * 7 5 4 9 9 C 1.54317 * 107.27514 * 181.09709 * 8 7 5 10 10 C 1.55156 * 102.94471 * 22.19305 * 9 8 7 11 11 H 1.08995 * 111.03840 * 82.58365 * 10 9 8 12 12 C 1.53001 * 111.00983 * 206.42770 * 10 9 8 13 13 N 1.46496 * 109.47205 * 178.64956 * 12 10 9 14 14 C 1.36945 * 119.99718 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47430 * 125.64397 * 179.97438 * 7 5 4 23 23 C 1.36414 * 105.62012 * 0.22221 * 4 3 2 24 24 O 1.33653 * 108.39161 * 359.63834 * 23 4 3 25 25 H 1.09000 * 109.46961 * 89.99491 * 1 2 3 26 26 H 1.08993 * 109.47295 * 210.00262 * 1 2 3 27 27 H 1.09001 * 109.46599 * 329.99841 * 1 2 3 28 28 H 1.07994 * 127.02302 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.87863 * 300.51277 * 8 7 5 30 30 H 1.09003 * 109.87889 * 61.52451 * 8 7 5 31 31 H 1.09004 * 110.72203 * 263.83001 * 9 8 7 32 32 H 1.09005 * 110.72323 * 140.55635 * 9 8 7 33 33 H 1.08997 * 109.46922 * 58.63998 * 12 10 9 34 34 H 1.09000 * 109.46483 * 298.64817 * 12 10 9 35 35 H 0.96996 * 120.00499 * 359.97438 * 13 12 10 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.09000 * 110.37078 * 36.99513 * 22 7 5 38 38 H 1.09003 * 110.45837 * 274.71829 * 22 7 5 39 39 H 1.07995 * 125.80683 * 179.74800 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6026 -0.0006 5 6 4.9026 1.4123 -0.0014 6 8 4.8321 2.6264 -0.0020 7 7 6.1068 0.8071 -0.0014 8 6 6.3361 -0.6451 0.0003 9 6 7.8629 -0.8680 0.0278 10 6 8.3984 0.4663 0.6112 11 1 8.3385 0.4695 1.6995 12 6 9.8301 0.7343 0.1428 13 7 10.2899 2.0149 0.6859 14 6 11.5505 2.4669 0.3996 15 1 12.2057 1.8792 -0.2261 16 6 11.9859 3.6805 0.9136 17 7 11.1875 4.3966 1.6767 18 14 13.7057 4.2968 0.5237 19 1 13.9243 5.6071 1.1873 20 1 14.7065 3.3177 1.0187 21 1 13.8533 4.4558 -0.9453 22 6 7.4125 1.4918 -0.0026 23 6 3.5790 -0.7584 -0.0060 24 8 2.2852 -1.0935 -0.0006 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.9597 2.1229 0.0004 29 1 5.8804 -1.0913 0.8843 30 1 5.9106 -1.0886 -0.8999 31 1 8.2472 -1.0303 -0.9792 32 1 8.1190 -1.7038 0.6789 33 1 9.8551 0.7713 -0.9462 34 1 10.4828 -0.0648 0.4943 35 1 9.7015 2.5426 1.2481 36 1 11.4920 5.2445 2.0362 37 1 7.3697 2.3914 0.6114 38 1 7.7104 1.7422 -1.0208 39 1 4.4102 -1.4478 -0.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752934581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:06 Heat of formation + Delta-G solvation = -28.119768 kcal Electronic energy + Delta-G solvation = -21084.776491 eV Core-core repulsion = 17800.512874 eV Total energy + Delta-G solvation = -3284.263617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60844 -41.04308 -38.81732 -36.48990 -34.34774 -33.93657 -32.96116 -31.88589 -30.14538 -27.93045 -26.97383 -25.72682 -24.02245 -23.10084 -21.85749 -21.39217 -20.53067 -19.12850 -18.05897 -17.63355 -17.44484 -17.19372 -16.65601 -16.41349 -15.74014 -15.30353 -15.13163 -14.80512 -14.70050 -14.08460 -14.03820 -13.97425 -13.84581 -13.75431 -13.42164 -13.12454 -12.97195 -12.70680 -12.64047 -12.28480 -12.14811 -11.87112 -11.64629 -11.60280 -11.25401 -10.93275 -10.89306 -9.79601 -9.59032 -9.00846 -7.95137 -5.24857 0.28241 0.98005 1.46269 1.50154 1.56232 1.70507 1.96860 2.20714 2.55804 3.30701 3.39009 3.55491 3.59694 3.67748 3.86103 3.91882 4.18143 4.22817 4.34620 4.38902 4.49593 4.54282 4.61885 4.73534 4.74183 4.77456 4.83392 4.85709 4.99948 5.03585 5.07985 5.19482 5.25112 5.37045 5.41379 5.49467 5.97128 6.26332 6.40541 7.00816 7.32163 8.09043 8.29912 9.28477 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.003157 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.108472 B = 8865.719244 C = 9442.415035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.003 4.003 3 C -0.199 4.199 4 C -0.260 4.260 5 C 0.587 3.413 6 O -0.597 6.597 7 N -0.612 5.612 8 C 0.080 3.920 9 C -0.109 4.109 10 C -0.097 4.097 11 H 0.078 0.922 12 C 0.163 3.837 13 N -0.750 5.750 14 C -0.245 4.245 15 H 0.081 0.919 16 C -0.081 4.081 17 N -0.974 5.974 18 Si 0.976 3.024 19 H -0.298 1.298 20 H -0.273 1.273 21 H -0.278 1.278 22 C 0.120 3.880 23 C 0.036 3.964 24 O -0.172 6.172 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.239 -19.148 -4.392 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C -0.219 4.219 4 C -0.264 4.264 5 C 0.379 3.621 6 O -0.479 6.479 7 N -0.344 5.344 8 C -0.041 4.041 9 C -0.147 4.147 10 C -0.117 4.117 11 H 0.096 0.904 12 C 0.037 3.963 13 N -0.393 5.393 14 C -0.376 4.376 15 H 0.099 0.901 16 C -0.273 4.273 17 N -0.624 5.624 18 Si 0.805 3.195 19 H -0.225 1.225 20 H -0.199 1.199 21 H -0.204 1.204 22 C -0.003 4.003 23 C -0.033 4.033 24 O -0.067 6.067 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.167 0.833 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.311 -18.805 -4.483 28.040 hybrid contribution 1.123 1.830 0.211 2.158 sum -19.188 -16.975 -4.273 25.972 Atomic orbital electron populations 1.20544 0.81658 1.05598 1.05110 1.22919 0.95627 0.82632 1.03967 1.22618 0.90276 1.00447 1.08532 1.21348 0.93485 0.94726 1.16859 1.17484 0.82482 0.86393 0.75720 1.90769 1.87398 1.16254 1.53506 1.48448 1.04502 1.09457 1.72027 1.22784 0.98430 0.78900 1.03965 1.22698 0.92140 0.96219 1.03682 1.22436 0.93215 0.95709 1.00324 0.90358 1.20789 0.92074 0.87414 0.96072 1.42654 1.14562 1.21601 1.60463 1.19647 0.91794 1.01874 1.24318 0.90110 1.25650 1.02408 0.98216 1.00999 1.69841 1.37826 1.14998 1.39776 0.85166 0.79729 0.76961 0.77642 1.22489 1.19918 1.20372 1.22095 0.81903 0.95987 1.00273 1.25765 0.84878 0.94880 0.97820 1.83794 1.16651 1.35480 1.70793 0.88375 0.88691 0.88134 0.83279 0.88220 0.87711 0.88810 0.86386 0.95575 0.94371 0.79777 0.94120 0.94240 0.92223 0.72758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.40 71.24 0.74 0.11 16 2 C 0.00 -0.05 7.28 24.76 0.18 0.13 16 3 C -0.20 -4.86 10.90 23.65 0.26 -4.60 16 4 C -0.26 -6.83 6.28 -18.99 -0.12 -6.95 16 5 C 0.59 20.31 7.84 86.65 0.68 20.99 16 6 O -0.60 -27.15 17.24 -4.07 -0.07 -27.22 16 7 N -0.61 -17.90 3.33 -815.65 -2.71 -20.61 16 8 C 0.08 1.29 5.01 86.73 0.43 1.73 16 9 C -0.11 -1.88 6.42 31.78 0.20 -1.68 16 10 C -0.10 -2.90 3.11 -9.39 -0.03 -2.93 16 11 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 12 C 0.16 6.13 5.71 86.38 0.49 6.63 16 13 N -0.75 -38.65 5.45 -343.47 -1.87 -40.53 16 14 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 16 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 17 N -0.97 -62.07 13.06 21.65 0.28 -61.79 16 18 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 19 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C 0.12 4.28 6.08 86.86 0.53 4.80 16 23 C 0.04 0.61 10.63 67.39 0.72 1.33 16 24 O -0.17 -2.95 10.52 4.44 0.05 -2.90 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.10 1.10 6.90 -2.39 -0.02 1.08 16 30 H 0.11 1.06 7.02 -2.39 -0.02 1.04 16 31 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 32 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.03 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.37 20.88 7.53 -92.71 -0.70 20.18 16 36 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 38 H 0.06 2.24 8.00 -2.39 -0.02 2.22 16 39 H 0.26 2.06 4.46 -2.91 -0.01 2.05 16 Total: -1.00 -82.66 326.76 3.46 -79.20 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.37 Total: 22.45 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.39 Total: 2.27 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -4.30 Total: -122.93 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.02 Total: -30.12 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -82.66 3.46 -79.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752934581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.082 kcal (2) G-P(sol) polarization free energy of solvation -82.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds